Wall clock time and date at job start Tue Mar 31 2020 10:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48499 * 109.47158 * 269.99847 * 3 2 1 5 5 H 1.48501 * 109.46979 * 29.99506 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.99823 * 3 2 1 7 7 C 1.38888 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99261 * 163.62537 * 7 2 1 9 9 N 1.37137 * 120.00518 * 343.63095 * 7 2 1 10 10 C 1.34773 * 120.00025 * 164.74100 * 9 7 2 11 11 O 1.21280 * 119.99951 * 174.95373 * 10 9 7 12 12 C 1.50701 * 120.00225 * 354.94970 * 10 9 7 13 13 C 1.52999 * 109.47195 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.82689 * 54.43398 * 13 12 10 15 15 C 1.54457 * 109.90844 * 175.37786 * 13 12 10 16 16 C 1.55457 * 102.36174 * 140.91167 * 15 13 12 17 17 C 1.54095 * 100.80093 * 326.79747 * 16 15 13 18 18 C 1.52879 * 115.01917 * 265.37454 * 17 16 15 19 19 C 1.53938 * 86.91071 * 268.05787 * 18 17 16 20 20 C 1.52864 * 115.04950 * 165.24879 * 17 16 15 21 21 O 1.42646 * 106.35903 * 35.27466 * 17 16 15 22 22 C 1.39789 * 119.99779 * 344.73587 * 9 7 2 23 23 C 1.38956 * 120.07797 * 281.20815 * 22 9 7 24 24 C 1.38084 * 119.92564 * 179.78979 * 23 22 9 25 25 C 1.38317 * 120.06928 * 0.46938 * 24 23 22 26 26 C 1.38303 * 120.15969 * 359.78473 * 25 24 23 27 27 C 1.38082 * 120.07548 * 359.97438 * 26 25 24 28 28 H 0.96999 * 120.00135 * 5.02467 * 1 2 3 29 29 H 1.08998 * 109.47137 * 60.00129 * 12 10 9 30 30 H 1.09007 * 109.46963 * 299.99950 * 12 10 9 31 31 H 1.09009 * 110.82580 * 259.12984 * 15 13 12 32 32 H 1.08996 * 110.82715 * 22.49205 * 15 13 12 33 33 H 1.08998 * 111.15674 * 208.91075 * 16 15 13 34 34 H 1.08998 * 111.15643 * 84.67604 * 16 15 13 35 35 H 1.08999 * 113.66283 * 22.58638 * 18 17 16 36 36 H 1.09003 * 113.65640 * 153.52656 * 18 17 16 37 37 H 1.08997 * 113.59392 * 89.88206 * 19 18 17 38 38 H 1.09005 * 113.58753 * 220.70568 * 19 18 17 39 39 H 1.08996 * 113.65771 * 206.35524 * 20 17 16 40 40 H 1.09004 * 113.65125 * 337.30240 * 20 17 16 41 41 H 1.08005 * 120.03923 * 0.02562 * 23 22 9 42 42 H 1.07994 * 119.96845 * 180.20897 * 24 23 22 43 43 H 1.08003 * 119.91496 * 179.76804 * 25 24 23 44 44 H 1.07997 * 119.96058 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.03986 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4403 0.7000 7 6 2.0086 -1.2028 0.0005 8 1 3.0558 -1.2218 -0.2632 9 7 1.3647 -2.3663 0.3357 10 6 1.9288 -3.5558 0.0473 11 8 1.4049 -4.5827 0.4242 12 6 3.2104 -3.6101 -0.7436 13 6 3.6326 -5.0687 -0.9312 14 1 2.8161 -5.6353 -1.3788 15 6 4.8807 -5.1425 -1.8381 16 6 5.7146 -6.2690 -1.1655 17 6 5.3493 -6.0534 0.3159 18 6 6.3264 -5.1792 1.1022 19 6 7.0542 -6.4809 1.4837 20 6 5.7160 -7.2085 1.2476 21 8 3.9840 -5.6407 0.3371 22 6 0.1234 -2.3184 0.9767 23 6 0.0530 -2.0585 2.3399 24 6 -1.1751 -2.0076 2.9690 25 6 -2.3339 -2.2246 2.2456 26 6 -2.2673 -2.4887 0.8897 27 6 -1.0428 -2.5361 0.2532 28 1 -0.4850 0.8368 -0.0736 29 1 3.9915 -3.0715 -0.2071 30 1 3.0552 -3.1488 -1.7190 31 1 4.6046 -5.4195 -2.8556 32 1 5.4226 -4.1969 -1.8292 33 1 6.7816 -6.1219 -1.3329 34 1 5.3965 -7.2530 -1.5098 35 1 6.9199 -4.5138 0.4754 36 1 5.8708 -4.6680 1.9503 37 1 7.8359 -6.7661 0.7797 38 1 7.3883 -6.5060 2.5210 39 1 5.0895 -7.2685 2.1375 40 1 5.8201 -8.1660 0.7371 41 1 0.9577 -1.8928 2.9061 42 1 -1.2308 -1.8024 4.0278 43 1 -3.2929 -2.1879 2.7409 44 1 -3.1741 -2.6580 0.3280 45 1 -0.9915 -2.7420 -0.8058 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888564097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:44 Heat of formation + Delta-G solvation = -22.457587 kcal Electronic energy + Delta-G solvation = -26992.483469 eV Core-core repulsion = 23361.901393 eV Total energy + Delta-G solvation = -3630.582076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.37416 -39.19069 -37.31642 -36.12869 -34.59743 -32.06720 -31.59614 -30.43158 -29.80963 -28.55213 -25.74861 -25.33018 -24.79631 -22.75680 -21.76776 -21.44466 -20.56236 -19.09834 -18.72092 -17.57838 -16.51300 -16.15322 -15.71603 -15.42760 -15.09366 -14.68230 -14.46723 -14.23997 -14.13136 -13.52895 -13.20274 -13.00621 -12.80347 -12.48403 -12.36287 -12.11805 -11.94887 -11.69041 -11.49461 -11.46433 -11.25496 -11.15055 -10.98479 -10.96992 -10.90386 -10.63694 -10.49005 -10.36806 -10.24744 -10.20387 -10.12518 -9.35621 -8.97620 -8.44652 -8.04626 -7.79481 -7.47974 -6.19791 -3.95987 2.54568 2.58906 3.08981 3.19687 3.21732 3.86603 4.02536 4.09022 4.53384 4.62519 4.64959 4.73101 4.83400 4.92802 5.04336 5.13054 5.21817 5.25420 5.47990 5.67483 5.73277 5.77737 5.82935 5.85513 5.85707 5.89920 5.90143 5.96513 6.05300 6.06447 6.13791 6.18524 6.33069 6.42176 6.44450 6.52779 6.62168 6.64951 6.91328 7.12338 7.36576 7.41642 7.52279 7.61889 7.70923 7.84831 8.04676 8.51000 9.06578 9.45663 9.90584 10.65683 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.004373 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.039089 B = 6402.095276 C = 7374.350160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.043 3.957 3 Si 0.917 3.083 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.349 4.349 8 H 0.100 0.900 9 N -0.422 5.422 10 C 0.472 3.528 11 O -0.583 6.583 12 C -0.128 4.128 13 C 0.099 3.901 14 H 0.082 0.918 15 C -0.151 4.151 16 C -0.129 4.129 17 C 0.078 3.922 18 C -0.150 4.150 19 C -0.140 4.140 20 C -0.129 4.129 21 O -0.337 6.337 22 C 0.245 3.755 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.148 4.148 26 C -0.122 4.122 27 C -0.068 4.068 28 H 0.271 0.729 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.969 -6.879 -1.397 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.164 4.164 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.475 4.475 8 H 0.118 0.882 9 N -0.140 5.140 10 C 0.261 3.739 11 O -0.466 6.466 12 C -0.168 4.168 13 C 0.041 3.959 14 H 0.099 0.901 15 C -0.189 4.189 16 C -0.166 4.166 17 C 0.037 3.963 18 C -0.188 4.188 19 C -0.177 4.177 20 C -0.166 4.166 21 O -0.255 6.255 22 C 0.154 3.846 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.166 4.166 26 C -0.141 4.141 27 C -0.087 4.087 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.405 -7.234 -0.986 11.133 hybrid contribution 0.503 1.437 -0.289 1.550 sum 8.908 -5.797 -1.274 10.704 Atomic orbital electron populations 1.69931 1.05690 1.27719 1.45191 1.25242 0.95422 0.99563 0.96195 0.86084 0.79516 0.81659 0.78394 1.20348 1.20708 1.19449 1.19538 0.95219 0.83350 1.49403 0.88197 1.41367 1.16306 1.05603 1.50706 1.20057 0.87447 0.82824 0.83526 1.90595 1.65812 1.33449 1.56768 1.21802 0.97307 0.96138 1.01536 1.22536 0.95914 0.93670 0.83752 0.90056 1.23225 0.96531 0.99336 0.99787 1.22881 1.00505 0.99459 0.93777 1.23069 0.83749 0.95288 0.94149 1.23338 0.97662 0.96800 1.00966 1.22753 0.96327 0.97025 1.01607 1.23063 0.96470 0.96950 1.00122 1.88565 1.24365 1.79103 1.33480 1.17079 0.85363 0.92338 0.89819 1.20992 0.96967 1.02039 0.94358 1.20651 0.92609 1.02441 0.98489 1.20711 0.97077 1.04276 0.94548 1.20664 0.96600 1.02293 0.94547 1.20787 0.91684 0.97951 0.98314 0.91821 0.89719 0.88846 0.90191 0.90342 0.90264 0.90347 0.91412 0.89269 0.90326 0.91107 0.89293 0.91213 0.87682 0.87750 0.87881 0.87712 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.16 10.34 55.49 0.57 -21.59 16 2 C 0.04 1.07 5.24 -17.49 -0.09 0.98 16 3 Si 0.92 19.43 29.59 -169.99 -5.03 14.40 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.35 -8.74 9.19 -14.94 -0.14 -8.88 16 8 H 0.10 2.33 6.46 -52.48 -0.34 1.99 16 9 N -0.42 -10.81 2.66 -58.98 -0.16 -10.96 16 10 C 0.47 11.55 7.48 -10.99 -0.08 11.47 16 11 O -0.58 -15.83 15.47 -6.81 -0.11 -15.93 16 12 C -0.13 -2.47 3.82 -27.88 -0.11 -2.58 16 13 C 0.10 1.71 3.05 -25.97 -0.08 1.64 16 14 H 0.08 1.50 7.95 -51.93 -0.41 1.09 16 15 C -0.15 -1.90 6.56 -24.66 -0.16 -2.07 16 16 C -0.13 -1.48 6.21 -24.85 -0.15 -1.63 16 17 C 0.08 1.10 1.44 -90.18 -0.13 0.96 16 18 C -0.15 -1.91 7.57 -26.30 -0.20 -2.11 16 19 C -0.14 -1.45 7.92 -25.65 -0.20 -1.65 16 20 C -0.13 -1.58 7.64 -26.21 -0.20 -1.78 16 21 O -0.34 -6.37 10.17 -47.60 -0.48 -6.86 16 22 C 0.24 6.26 2.29 -83.70 -0.19 6.07 16 23 C -0.12 -2.99 9.95 -39.37 -0.39 -3.39 16 24 C -0.12 -2.61 10.04 -39.61 -0.40 -3.01 16 25 C -0.15 -2.99 10.04 -39.53 -0.40 -3.38 16 26 C -0.12 -2.61 10.04 -39.61 -0.40 -3.01 16 27 C -0.07 -1.66 8.66 -39.37 -0.34 -2.00 16 28 H 0.27 6.82 8.32 -40.82 -0.34 6.48 16 29 H 0.08 1.60 7.53 -51.93 -0.39 1.21 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 32 H 0.08 0.93 7.85 -51.93 -0.41 0.53 16 33 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 41 H 0.11 2.51 8.06 -52.48 -0.42 2.08 16 42 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 44 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 45 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -30.67 366.33 -10.36 -41.03 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.02 Total: 8.76 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -3.66 Total: -14.38 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.42 Total: -32.55 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.59 Total: -22.79 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.67 -10.36 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.576 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds