Wall clock time and date at job start Tue Mar 31 2020 12:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38045 * 126.29162 * 2 1 4 4 C 1.47435 * 126.41377 * 359.97438 * 3 2 1 5 5 O 1.21607 * 120.00014 * 305.73088 * 4 3 2 6 6 N 1.34770 * 120.00250 * 125.72946 * 4 3 2 7 7 C 1.46504 * 120.00048 * 4.89513 * 6 4 3 8 8 C 1.52998 * 109.47277 * 267.41737 * 7 6 4 9 9 F 1.39903 * 109.47077 * 302.90898 * 8 7 6 10 10 F 1.39898 * 109.47155 * 62.90643 * 8 7 6 11 11 C 1.46502 * 120.00464 * 184.89730 * 6 4 3 12 12 C 1.53000 * 109.46743 * 297.44521 * 11 6 4 13 13 C 1.52996 * 109.47063 * 57.44258 * 11 6 4 14 14 C 1.41288 * 107.17285 * 180.24715 * 3 2 1 15 15 N 1.30451 * 108.02208 * 359.61532 * 14 3 2 16 16 N 1.34258 * 126.29581 * 180.02562 * 2 1 3 17 17 C 1.46502 * 125.75105 * 359.95745 * 16 2 1 18 18 C 1.50699 * 109.46745 * 90.00079 * 17 16 2 19 19 H 1.07993 * 120.00703 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00009 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99699 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00440 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46752 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46773 * 120.00266 * 22 20 18 25 25 H 1.48495 * 109.47670 * 240.00536 * 22 20 18 26 26 H 1.09000 * 109.47014 * 90.00136 * 1 2 3 27 27 H 1.09004 * 109.46384 * 210.00168 * 1 2 3 28 28 H 1.08997 * 109.46986 * 330.00199 * 1 2 3 29 29 H 1.09009 * 109.46954 * 27.41645 * 7 6 4 30 30 H 1.08998 * 109.47597 * 147.41033 * 7 6 4 31 31 H 1.09004 * 109.47158 * 182.91107 * 8 7 6 32 32 H 1.08992 * 109.47368 * 177.45060 * 11 6 4 33 33 H 1.08997 * 109.47335 * 177.73578 * 12 11 6 34 34 H 1.08998 * 109.47412 * 297.73939 * 12 11 6 35 35 H 1.09004 * 109.47405 * 57.73687 * 12 11 6 36 36 H 1.08999 * 109.47059 * 300.00480 * 13 11 6 37 37 H 1.09006 * 109.46999 * 60.00272 * 13 11 6 38 38 H 1.09003 * 109.47294 * 180.02562 * 13 11 6 39 39 H 1.08000 * 125.98678 * 179.73595 * 14 3 2 40 40 H 1.08998 * 109.46988 * 209.99696 * 17 16 2 41 41 H 1.09000 * 109.47502 * 330.00135 * 17 16 2 42 42 H 0.97004 * 120.00104 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 -0.0005 5 8 1.1181 2.9178 -0.8558 6 7 2.3358 3.3667 0.9468 7 6 3.3421 2.9174 1.9122 8 6 2.6445 2.3824 3.1644 9 9 1.8184 3.3769 3.6989 10 9 1.8718 1.2661 2.8268 11 6 1.8188 4.7359 1.0115 12 6 2.1773 5.4777 -0.2778 13 6 0.2979 4.6996 1.1729 14 6 3.6590 0.6499 -0.0058 15 7 3.6341 -0.6543 -0.0007 16 7 2.3017 -1.0821 -0.0005 17 6 1.8502 -2.4758 -0.0002 18 6 1.6945 -2.9535 -1.4210 19 1 1.9107 -2.2861 -2.2420 20 6 1.2771 -4.2433 -1.6728 21 7 1.0142 -5.0563 -0.6730 22 14 1.0834 -4.8354 -3.4338 23 1 1.4384 -3.7364 -4.3673 24 1 1.9829 -5.9936 -3.6683 25 1 -0.3244 -5.2471 -3.6657 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3632 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 3.9456 2.1265 1.4665 30 1 3.9844 3.7550 2.1840 31 1 3.3932 2.0961 3.9032 32 1 2.2624 5.2520 1.8628 33 1 1.7583 6.4834 -0.2469 34 1 3.2615 5.5386 -0.3725 35 1 1.7676 4.9395 -1.1326 36 1 -0.1457 4.1835 0.3214 37 1 0.0425 4.1711 2.0914 38 1 -0.0869 5.7184 1.2205 39 1 4.5448 1.2677 -0.0114 40 1 2.5852 -3.0957 0.5131 41 1 0.8918 -2.5472 0.5141 42 1 0.7208 -5.9638 -0.8501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889601538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:49 Heat of formation + Delta-G solvation = -65.784473 kcal Electronic energy + Delta-G solvation = -28054.384656 eV Core-core repulsion = 23899.987007 eV Total energy + Delta-G solvation = -4154.397649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.85779 -46.85508 -40.86548 -39.39861 -35.92503 -33.98548 -33.12425 -32.06222 -30.98209 -28.96810 -27.31967 -27.12902 -26.58977 -23.76247 -23.45448 -22.42354 -21.03623 -19.41452 -18.46252 -17.64612 -17.24310 -16.88909 -16.76760 -15.98290 -15.91517 -15.44451 -14.59561 -14.48018 -14.16307 -14.10932 -13.82728 -13.58754 -13.39543 -13.21441 -13.14443 -12.60382 -12.51694 -12.51154 -12.40051 -12.10268 -12.03553 -11.90436 -11.68143 -11.49283 -11.35747 -11.10805 -11.05455 -11.03637 -10.88442 -10.32983 -10.16666 -9.87128 -9.26607 -8.71287 -8.68967 -8.52776 -7.78996 -6.31203 -4.38541 2.38947 2.79569 2.85358 3.18916 3.26898 3.31110 3.41173 3.50535 3.83849 4.21607 4.26951 4.38659 4.56909 4.84395 5.03149 5.11094 5.14180 5.18303 5.26482 5.27347 5.32035 5.55431 5.65278 5.67869 5.68610 5.84032 5.96532 5.98336 6.05850 6.25578 6.35399 6.37831 6.53209 6.68703 6.83227 6.93911 7.18968 7.48161 7.60238 7.80534 7.84138 8.41733 8.48731 8.68022 9.28430 10.76925 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.021198 B = 0.003946 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.577286 B = 7094.540276 C = 7563.618334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.158 3.842 3 C -0.322 4.322 4 C 0.614 3.386 5 O -0.531 6.531 6 N -0.610 5.610 7 C 0.058 3.942 8 C 0.243 3.757 9 F -0.207 7.207 10 F -0.191 7.191 11 C 0.149 3.851 12 C -0.170 4.170 13 C -0.170 4.170 14 C 0.045 3.955 15 N -0.291 5.291 16 N -0.311 5.311 17 C 0.253 3.747 18 C -0.538 4.538 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.174 0.826 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 18.164 8.474 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.022 3.978 3 C -0.338 4.338 4 C 0.405 3.595 5 O -0.407 6.407 6 N -0.344 5.344 7 C -0.067 4.067 8 C 0.187 3.813 9 F -0.189 7.189 10 F -0.172 7.172 11 C 0.047 3.953 12 C -0.228 4.228 13 C -0.228 4.228 14 C -0.140 4.140 15 N -0.112 5.112 16 N -0.089 5.089 17 C 0.135 3.865 18 C -0.577 4.577 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.528 5.528 22 Si 0.734 3.266 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.191 0.809 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.673 16.933 8.052 19.107 hybrid contribution -0.493 0.235 -0.706 0.893 sum 3.180 17.168 7.346 18.943 Atomic orbital electron populations 1.20401 0.87456 1.02909 1.03738 1.21161 0.94425 0.86413 0.95801 1.19537 0.93480 0.92225 1.28518 1.17474 0.78750 0.84028 0.79291 1.90672 1.35738 1.77638 1.36646 1.47873 1.42593 1.12621 1.31322 1.22894 0.91738 1.03042 0.89033 1.22476 0.86605 0.75941 0.96252 1.92956 1.75718 1.62580 1.87600 1.93074 1.77876 1.52682 1.93562 1.20987 0.95027 0.81059 0.98263 1.22235 1.01193 1.00076 0.99258 1.22200 0.95048 1.02083 1.03431 1.23544 0.95797 0.92540 1.02160 1.77095 0.98749 1.11951 1.23381 1.49212 1.02283 1.08100 1.49267 1.19814 0.96309 0.71024 0.99319 1.21312 1.47125 0.98093 0.91124 0.91590 1.24918 0.94485 0.96016 0.98234 1.69927 1.44745 1.07105 1.31025 0.86285 0.77935 0.78839 0.83577 1.19497 1.20599 1.20577 0.89635 0.90551 0.90882 0.86281 0.87924 0.87176 0.89985 0.92095 0.92991 0.90053 0.90285 0.92435 0.92140 0.80876 0.92608 0.92710 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.58 9.93 36.01 0.36 -1.22 16 2 C 0.16 3.19 6.87 -81.60 -0.56 2.63 16 3 C -0.32 -5.81 3.92 -105.06 -0.41 -6.22 16 4 C 0.61 10.11 6.39 -12.52 -0.08 10.03 16 5 O -0.53 -10.04 13.32 5.27 0.07 -9.97 16 6 N -0.61 -7.65 2.34 -167.36 -0.39 -8.04 16 7 C 0.06 0.55 5.54 -4.04 -0.02 0.53 16 8 C 0.24 2.48 5.60 37.16 0.21 2.68 16 9 F -0.21 -2.33 16.01 2.25 0.04 -2.30 16 10 F -0.19 -2.81 15.64 2.25 0.04 -2.78 16 11 C 0.15 1.64 2.67 -67.93 -0.18 1.46 16 12 C -0.17 -1.83 9.19 37.16 0.34 -1.49 16 13 C -0.17 -2.03 9.08 37.16 0.34 -1.69 16 14 C 0.05 0.78 9.98 -16.98 -0.17 0.61 16 15 N -0.29 -6.15 12.50 30.86 0.39 -5.76 16 16 N -0.31 -6.98 3.56 -57.77 -0.21 -7.19 16 17 C 0.25 6.29 5.97 -5.19 -0.03 6.26 16 18 C -0.54 -14.61 9.39 -34.44 -0.32 -14.93 16 19 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -24.70 13.29 55.43 0.74 -23.97 16 22 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.08 1.36 7.05 -51.93 -0.37 0.99 16 28 H 0.07 1.22 7.96 -51.93 -0.41 0.80 16 29 H 0.12 1.15 4.28 -51.92 -0.22 0.93 16 30 H 0.10 0.60 8.00 -51.93 -0.42 0.19 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.73 7.82 -51.93 -0.41 0.32 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.13 6.13 -51.93 -0.32 0.81 16 36 H 0.08 1.15 6.15 -51.93 -0.32 0.83 16 37 H 0.06 0.72 7.53 -51.93 -0.39 0.33 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.17 2.20 7.18 -52.49 -0.38 1.83 16 40 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.06 1.36 7.02 -51.93 -0.36 1.00 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -31.83 351.57 -5.36 -37.19 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.67 Total: 1.13 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.63 Total: 0.37 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.52 Total: -44.95 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.07 Total: -5.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.83 -5.36 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889601538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.591 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds