Wall clock time and date at job start Tue Mar 31 2020 12:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38045 * 126.29162 * 2 1 4 4 C 1.47435 * 126.41377 * 359.97438 * 3 2 1 5 5 O 1.21607 * 120.00014 * 305.73088 * 4 3 2 6 6 N 1.34770 * 120.00250 * 125.72946 * 4 3 2 7 7 C 1.46504 * 120.00048 * 4.89513 * 6 4 3 8 8 C 1.52998 * 109.47277 * 267.41737 * 7 6 4 9 9 F 1.39903 * 109.47077 * 302.90898 * 8 7 6 10 10 F 1.39898 * 109.47155 * 62.90643 * 8 7 6 11 11 C 1.46502 * 120.00464 * 184.89730 * 6 4 3 12 12 C 1.53000 * 109.46743 * 297.44521 * 11 6 4 13 13 C 1.52996 * 109.47063 * 57.44258 * 11 6 4 14 14 C 1.41288 * 107.17285 * 180.24715 * 3 2 1 15 15 N 1.30451 * 108.02208 * 359.61532 * 14 3 2 16 16 N 1.34258 * 126.29581 * 180.02562 * 2 1 3 17 17 C 1.46502 * 125.75105 * 359.95745 * 16 2 1 18 18 C 1.50699 * 109.46745 * 90.00079 * 17 16 2 19 19 H 1.07993 * 120.00703 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00009 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99699 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00440 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46752 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46773 * 120.00266 * 22 20 18 25 25 H 1.48495 * 109.47670 * 240.00536 * 22 20 18 26 26 H 1.09000 * 109.47014 * 90.00136 * 1 2 3 27 27 H 1.09004 * 109.46384 * 210.00168 * 1 2 3 28 28 H 1.08997 * 109.46986 * 330.00199 * 1 2 3 29 29 H 1.09009 * 109.46954 * 27.41645 * 7 6 4 30 30 H 1.08998 * 109.47597 * 147.41033 * 7 6 4 31 31 H 1.09004 * 109.47158 * 182.91107 * 8 7 6 32 32 H 1.08992 * 109.47368 * 177.45060 * 11 6 4 33 33 H 1.08997 * 109.47335 * 177.73578 * 12 11 6 34 34 H 1.08998 * 109.47412 * 297.73939 * 12 11 6 35 35 H 1.09004 * 109.47405 * 57.73687 * 12 11 6 36 36 H 1.08999 * 109.47059 * 300.00480 * 13 11 6 37 37 H 1.09006 * 109.46999 * 60.00272 * 13 11 6 38 38 H 1.09003 * 109.47294 * 180.02562 * 13 11 6 39 39 H 1.08000 * 125.98678 * 179.73595 * 14 3 2 40 40 H 1.08998 * 109.46988 * 209.99696 * 17 16 2 41 41 H 1.09000 * 109.47502 * 330.00135 * 17 16 2 42 42 H 0.97004 * 120.00104 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 -0.0005 5 8 1.1181 2.9178 -0.8558 6 7 2.3358 3.3667 0.9468 7 6 3.3421 2.9174 1.9122 8 6 2.6445 2.3824 3.1644 9 9 1.8184 3.3769 3.6989 10 9 1.8718 1.2661 2.8268 11 6 1.8188 4.7359 1.0115 12 6 2.1773 5.4777 -0.2778 13 6 0.2979 4.6996 1.1729 14 6 3.6590 0.6499 -0.0058 15 7 3.6341 -0.6543 -0.0007 16 7 2.3017 -1.0821 -0.0005 17 6 1.8502 -2.4758 -0.0002 18 6 1.6945 -2.9535 -1.4210 19 1 1.9107 -2.2861 -2.2420 20 6 1.2771 -4.2433 -1.6728 21 7 1.0142 -5.0563 -0.6730 22 14 1.0834 -4.8354 -3.4338 23 1 1.4384 -3.7364 -4.3673 24 1 1.9829 -5.9936 -3.6683 25 1 -0.3244 -5.2471 -3.6657 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3632 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 3.9456 2.1265 1.4665 30 1 3.9844 3.7550 2.1840 31 1 3.3932 2.0961 3.9032 32 1 2.2624 5.2520 1.8628 33 1 1.7583 6.4834 -0.2469 34 1 3.2615 5.5386 -0.3725 35 1 1.7676 4.9395 -1.1326 36 1 -0.1457 4.1835 0.3214 37 1 0.0425 4.1711 2.0914 38 1 -0.0869 5.7184 1.2205 39 1 4.5448 1.2677 -0.0114 40 1 2.5852 -3.0957 0.5131 41 1 0.8918 -2.5472 0.5141 42 1 0.7208 -5.9638 -0.8501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889601538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:48 Heat of formation + Delta-G solvation = -85.232944 kcal Electronic energy + Delta-G solvation = -28055.228005 eV Core-core repulsion = 23899.987007 eV Total energy + Delta-G solvation = -4155.240998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.73002 -47.76387 -42.32828 -40.62083 -37.05410 -35.82530 -34.28735 -33.67515 -32.54915 -29.95163 -29.06416 -28.11476 -28.01937 -25.49066 -24.57056 -23.49839 -22.35529 -20.87212 -19.69000 -18.85086 -18.67875 -18.12515 -17.86142 -17.28211 -16.97551 -16.71227 -16.37695 -15.96649 -15.45694 -15.32337 -14.91853 -14.78542 -14.57522 -14.33847 -14.18653 -14.12706 -13.90365 -13.71631 -13.63019 -13.41850 -13.31227 -13.12454 -12.94225 -12.85608 -12.74903 -12.72070 -12.32713 -12.30633 -12.05969 -11.89562 -11.80055 -11.63248 -10.75935 -10.54450 -10.19279 -9.76022 -9.29192 -8.37412 -6.53523 0.89490 1.35264 1.36144 1.40650 1.49372 1.67236 1.90300 2.24328 2.32683 2.94292 3.08452 3.51387 3.56689 3.66392 3.75140 3.96149 4.06299 4.15972 4.25070 4.26647 4.36815 4.49157 4.52341 4.54602 4.61406 4.79052 4.81136 4.85223 4.89200 4.94697 4.99695 5.02523 5.17750 5.34410 5.44163 5.50275 5.69385 5.76511 5.77321 6.10330 6.37345 6.56629 6.89685 7.17628 7.25908 8.70277 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.021198 B = 0.003946 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.577286 B = 7094.540276 C = 7563.618334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.137 3.863 3 C -0.315 4.315 4 C 0.613 3.387 5 O -0.563 6.563 6 N -0.601 5.601 7 C 0.053 3.947 8 C 0.231 3.769 9 F -0.213 7.213 10 F -0.223 7.223 11 C 0.146 3.854 12 C -0.164 4.164 13 C -0.166 4.166 14 C 0.067 3.933 15 N -0.327 5.327 16 N -0.336 5.336 17 C 0.270 3.730 18 C -0.555 4.555 19 H 0.049 0.951 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.970 3.030 23 H -0.275 1.275 24 H -0.272 1.272 25 H -0.269 1.269 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.223 0.777 40 H 0.032 0.968 41 H 0.047 0.953 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 20.345 8.957 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.002 3.998 3 C -0.330 4.330 4 C 0.402 3.598 5 O -0.441 6.441 6 N -0.334 5.334 7 C -0.071 4.071 8 C 0.176 3.824 9 F -0.195 7.195 10 F -0.204 7.204 11 C 0.044 3.956 12 C -0.222 4.222 13 C -0.224 4.224 14 C -0.118 4.118 15 N -0.148 5.148 16 N -0.114 5.114 17 C 0.152 3.848 18 C -0.593 4.593 19 H 0.067 0.933 20 C -0.176 4.176 21 N -0.554 5.554 22 Si 0.794 3.206 23 H -0.200 1.200 24 H -0.197 1.197 25 H -0.194 1.194 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.135 0.865 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.239 0.761 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.104 19.141 8.576 21.587 hybrid contribution -0.896 -0.290 -0.773 1.218 sum 4.208 18.852 7.803 20.832 Atomic orbital electron populations 1.20364 0.86869 1.03242 1.03427 1.21579 0.95221 0.86705 0.96250 1.19811 0.93578 0.92793 1.26816 1.17305 0.78754 0.83733 0.79990 1.90674 1.37145 1.77997 1.38330 1.47882 1.42357 1.12662 1.30458 1.23248 0.91197 1.04883 0.87776 1.23053 0.86656 0.74893 0.97796 1.92941 1.76132 1.62715 1.87703 1.93020 1.78929 1.54542 1.93926 1.21225 0.94380 0.80262 0.99739 1.22167 1.01979 1.00504 0.97554 1.22153 0.96058 1.02860 1.01371 1.24287 0.97038 0.91531 0.98991 1.77044 0.98291 1.14039 1.25400 1.48913 1.03237 1.07442 1.51767 1.19290 0.95126 0.72589 0.97839 1.21432 1.47742 0.98407 0.91684 0.93316 1.25693 0.93851 0.95944 1.02120 1.70001 1.44989 1.07554 1.32870 0.85330 0.78468 0.78167 0.78668 1.19973 1.19681 1.19365 0.90205 0.90915 0.89737 0.86454 0.83061 0.82985 0.86501 0.90154 0.91600 0.93543 0.93468 0.93421 0.89913 0.76126 0.95006 0.93549 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.07 9.93 71.24 0.71 -2.36 16 2 C 0.14 5.67 6.87 42.14 0.29 5.96 16 3 C -0.31 -11.18 3.92 -20.15 -0.08 -11.26 16 4 C 0.61 19.59 6.39 86.67 0.55 20.15 16 5 O -0.56 -21.42 13.32 -4.05 -0.05 -21.48 16 6 N -0.60 -13.50 2.34 -801.68 -1.88 -15.38 16 7 C 0.05 0.78 5.54 86.38 0.48 1.26 16 8 C 0.23 4.02 5.60 71.98 0.40 4.42 16 9 F -0.21 -4.20 16.01 44.97 0.72 -3.48 16 10 F -0.22 -6.37 15.64 44.97 0.70 -5.67 16 11 C 0.15 2.76 2.67 44.99 0.12 2.88 16 12 C -0.16 -3.10 9.19 71.98 0.66 -2.43 16 13 C -0.17 -3.74 9.08 71.98 0.65 -3.09 16 14 C 0.07 2.21 9.98 85.65 0.85 3.06 16 15 N -0.33 -13.87 12.50 -56.27 -0.70 -14.58 16 16 N -0.34 -15.55 3.56 -336.70 -1.20 -16.75 16 17 C 0.27 14.12 5.97 85.63 0.51 14.63 16 18 C -0.55 -31.12 9.39 25.60 0.24 -30.88 16 19 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 20 C 0.03 1.38 5.46 84.65 0.46 1.84 16 21 N -0.92 -51.67 13.29 21.45 0.28 -51.38 16 22 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.07 2.75 7.05 -2.39 -0.02 2.73 16 28 H 0.08 2.93 7.96 -2.39 -0.02 2.91 16 29 H 0.12 1.81 4.28 -2.38 -0.01 1.80 16 30 H 0.15 0.84 8.00 -2.39 -0.02 0.82 16 31 H 0.15 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.12 1.49 7.82 -2.39 -0.02 1.47 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.23 6.13 -2.38 -0.01 1.22 16 36 H 0.05 1.38 6.15 -2.39 -0.01 1.36 16 37 H 0.05 1.14 7.53 -2.38 -0.02 1.13 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.22 4.80 7.18 -2.91 -0.02 4.78 16 40 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.05 2.45 7.02 -2.39 -0.02 2.43 16 42 H 0.27 14.39 8.31 -92.70 -0.77 13.62 16 Total: -1.00 -72.49 351.57 6.80 -65.68 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.04 Total: 13.34 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.86 Total: 4.20 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -3.49 Total: -98.09 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.48 kcal Atomic # 9 Polarization: -10.57 SS G_CDS: 1.42 Total: -9.15 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -72.49 6.80 -65.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889601538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.548 kcal (2) G-P(sol) polarization free energy of solvation -72.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds