Wall clock time and date at job start Tue Mar 31 2020 12:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.46604 * 299.99592 * 7 6 4 9 9 C 1.52991 * 109.47229 * 59.99550 * 7 6 4 10 10 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 11 11 C 1.52996 * 109.46736 * 179.97438 * 10 7 6 12 12 F 1.39903 * 109.46943 * 299.99289 * 10 7 6 13 13 F 1.39897 * 109.47457 * 59.99381 * 10 7 6 14 14 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 15 15 N 1.30448 * 108.02337 * 359.61207 * 14 3 2 16 16 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 17 17 C 1.46503 * 125.75762 * 359.97438 * 16 2 1 18 18 C 1.50696 * 109.46974 * 90.00112 * 17 16 2 19 19 H 1.08001 * 120.00163 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99873 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99984 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00024 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47221 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46825 * 120.00079 * 22 20 18 25 25 H 1.48502 * 109.47073 * 240.00389 * 22 20 18 26 26 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 27 27 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 28 28 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 29 29 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 30 30 H 1.09001 * 109.47281 * 60.00295 * 8 7 6 31 31 H 1.09002 * 109.46837 * 180.02562 * 8 7 6 32 32 H 1.08998 * 109.46909 * 299.99663 * 8 7 6 33 33 H 1.09002 * 109.47337 * 59.99736 * 9 7 6 34 34 H 1.09002 * 109.47025 * 180.02562 * 9 7 6 35 35 H 1.09001 * 109.47264 * 300.00076 * 9 7 6 36 36 H 1.09001 * 109.47155 * 60.00044 * 11 10 7 37 37 H 1.09004 * 109.47253 * 179.97438 * 11 10 7 38 38 H 1.08994 * 109.47627 * 299.99497 * 11 10 7 39 39 H 1.08000 * 125.99145 * 179.77305 * 14 3 2 40 40 H 1.09004 * 109.46911 * 210.00324 * 17 16 2 41 41 H 1.09002 * 109.46643 * 329.99944 * 17 16 2 42 42 H 0.96997 * 120.00146 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 1.5300 5.1837 -1.2477 9 6 1.5185 5.1802 1.2508 10 6 3.5902 5.8251 0.0127 11 6 3.1353 7.2859 0.0121 12 9 4.3527 5.5742 1.1585 13 9 4.3643 5.5777 -1.1260 14 6 3.6589 0.6498 -0.0059 15 7 3.6340 -0.6545 -0.0007 16 7 2.3016 -1.0822 -0.0005 17 6 1.8500 -2.4759 -0.0006 18 6 1.6946 -2.9535 -1.4214 19 1 1.9103 -2.2855 -2.2423 20 6 1.2772 -4.2431 -1.6734 21 7 1.0141 -5.0563 -0.6739 22 14 1.0839 -4.8349 -3.4347 23 1 1.4392 -3.7359 -4.3680 24 1 1.9834 -5.9930 -3.6691 25 1 -0.3239 -5.2465 -3.6669 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 3.7462 3.2972 0.0098 30 1 0.6568 4.5314 -1.2526 31 1 1.2064 6.2246 -1.2479 32 1 2.1328 4.9909 -2.1351 33 1 2.1129 4.9847 2.1433 34 1 1.1941 6.2208 1.2505 35 1 0.6452 4.5278 1.2458 36 1 2.5321 7.4790 0.8991 37 1 4.0085 7.9384 0.0179 38 1 2.5415 7.4813 -0.8808 39 1 4.5448 1.2675 -0.0108 40 1 2.5848 -3.0960 0.5130 41 1 0.8915 -2.5472 0.5136 42 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892543787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:45 Heat of formation + Delta-G solvation = -76.446350 kcal Electronic energy + Delta-G solvation = -27080.079046 eV Core-core repulsion = 22925.219063 eV Total energy + Delta-G solvation = -4154.859983 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.26564 -47.23075 -40.84130 -39.42097 -36.34412 -33.94760 -32.87760 -31.99207 -31.13130 -29.67257 -27.50880 -27.30274 -26.63709 -24.91268 -23.44497 -22.13964 -20.47613 -19.40660 -19.17876 -17.87028 -17.65487 -16.90333 -16.73102 -16.22588 -15.28708 -15.07003 -14.99605 -14.52028 -14.37386 -14.17007 -13.96643 -13.61412 -13.49565 -13.24296 -13.18208 -13.13141 -12.85738 -12.65201 -12.49057 -12.44588 -12.12016 -11.85246 -11.79518 -11.76091 -11.48532 -11.43947 -11.10891 -11.03126 -10.91240 -10.36891 -10.15247 -9.91669 -9.29288 -9.11473 -8.72142 -8.59411 -7.93287 -6.34374 -4.42097 2.15374 2.78409 2.96980 3.16631 3.24690 3.29284 3.33886 3.45844 3.74335 3.84071 4.13328 4.23864 4.25556 4.71709 4.75779 4.99059 5.03862 5.10859 5.22389 5.31351 5.32036 5.42185 5.48573 5.58762 5.62212 5.69761 5.74805 5.92098 6.09013 6.14211 6.18720 6.40041 6.49126 6.56069 6.79098 6.90069 7.14914 7.55685 7.64750 7.76351 7.78198 8.36742 8.53889 8.63940 9.24946 10.73925 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.002986 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.299797 B = 9375.228776 C = 9450.042365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.167 3.833 3 C -0.334 4.334 4 C 0.613 3.387 5 O -0.550 6.550 6 N -0.728 5.728 7 C 0.146 3.854 8 C -0.168 4.168 9 C -0.168 4.168 10 C 0.284 3.716 11 C -0.197 4.197 12 F -0.196 7.196 13 F -0.195 7.195 14 C 0.059 3.941 15 N -0.295 5.295 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.401 0.599 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.175 0.825 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 22.805 2.662 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.030 3.970 3 C -0.349 4.349 4 C 0.405 3.595 5 O -0.430 6.430 6 N -0.381 5.381 7 C 0.059 3.941 8 C -0.226 4.226 9 C -0.226 4.226 10 C 0.247 3.753 11 C -0.254 4.254 12 F -0.177 7.177 13 F -0.176 7.176 14 C -0.129 4.129 15 N -0.114 5.114 16 N -0.090 5.090 17 C 0.134 3.866 18 C -0.578 4.578 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.205 1.205 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.235 0.765 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.192 0.808 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.380 21.516 2.719 21.731 hybrid contribution 0.381 0.070 -0.951 1.027 sum 1.761 21.587 1.768 21.730 Atomic orbital electron populations 1.20568 0.86759 1.03783 1.03915 1.21463 0.94943 0.86490 0.94149 1.19619 0.93167 0.92317 1.29826 1.17204 0.84828 0.83639 0.73847 1.90617 1.16589 1.84133 1.51612 1.45705 1.10199 1.04062 1.78097 1.21137 0.92312 0.81591 0.99076 1.22330 1.01950 1.02881 0.95464 1.22328 1.01835 1.02911 0.95514 1.21381 0.84678 0.97495 0.71724 1.22879 1.04402 0.92028 1.06124 1.93027 1.78155 1.95619 1.50852 1.93030 1.77545 1.95674 1.51370 1.23736 0.96394 0.92639 1.00084 1.77155 0.98576 1.12235 1.23476 1.49385 1.02501 1.08321 1.48824 1.19864 0.96411 0.70899 0.99473 1.21287 1.47334 0.98138 0.91010 0.91599 1.24926 0.94446 0.95988 0.98317 1.69921 1.44570 1.07148 1.31074 0.86268 0.77961 0.78856 0.83438 1.19518 1.20560 1.20533 0.89836 0.90895 0.88791 0.76460 0.88563 0.91336 0.91695 0.91725 0.91339 0.88573 0.88666 0.89735 0.88648 0.80831 0.92501 0.92542 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 9.57 36.01 0.34 -1.28 16 2 C 0.17 3.37 7.01 -81.61 -0.57 2.80 16 3 C -0.33 -6.08 6.13 -105.07 -0.64 -6.73 16 4 C 0.61 9.82 7.23 -12.52 -0.09 9.73 16 5 O -0.55 -9.41 11.04 5.28 0.06 -9.35 16 6 N -0.73 -9.36 4.96 -48.67 -0.24 -9.60 16 7 C 0.15 1.55 0.46 -131.82 -0.06 1.49 16 8 C -0.17 -1.72 7.93 37.16 0.29 -1.43 16 9 C -0.17 -1.67 7.92 37.15 0.29 -1.38 16 10 C 0.28 2.68 1.36 -26.73 -0.04 2.64 16 11 C -0.20 -1.19 8.68 37.16 0.32 -0.87 16 12 F -0.20 -2.11 16.40 2.25 0.04 -2.07 16 13 F -0.20 -2.14 16.41 2.25 0.04 -2.10 16 14 C 0.06 1.05 11.50 -16.98 -0.20 0.85 16 15 N -0.29 -6.42 12.50 30.86 0.39 -6.03 16 16 N -0.31 -7.10 3.56 -57.77 -0.21 -7.31 16 17 C 0.25 6.24 5.97 -5.19 -0.03 6.21 16 18 C -0.54 -14.55 9.39 -34.44 -0.32 -14.87 16 19 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 20 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 22 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.07 1.26 7.05 -51.93 -0.37 0.90 16 28 H 0.09 1.55 6.50 -51.93 -0.34 1.21 16 29 H 0.40 4.76 7.31 -40.82 -0.30 4.46 16 30 H 0.10 1.21 6.17 -51.93 -0.32 0.89 16 31 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 32 H 0.06 0.69 7.80 -51.93 -0.41 0.29 16 33 H 0.06 0.66 7.80 -51.93 -0.41 0.26 16 34 H 0.07 0.49 6.43 -51.93 -0.33 0.15 16 35 H 0.10 1.18 6.16 -51.93 -0.32 0.86 16 36 H 0.09 0.46 6.43 -51.93 -0.33 0.12 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.47 6.43 -51.93 -0.33 0.13 16 39 H 0.17 2.34 7.50 -52.49 -0.39 1.95 16 40 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.06 1.39 7.02 -51.93 -0.36 1.03 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -30.31 347.21 -5.14 -35.44 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.36 Total: 4.97 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.79 Total: -1.13 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.68 Total: -46.80 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.06 Total: -9.35 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.07 Total: -4.17 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.31 -5.14 -35.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892543787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.003 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds