Wall clock time and date at job start Tue Mar 31 2020 12:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.46604 * 299.99592 * 7 6 4 9 9 C 1.52991 * 109.47229 * 59.99550 * 7 6 4 10 10 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 11 11 C 1.52996 * 109.46736 * 179.97438 * 10 7 6 12 12 F 1.39903 * 109.46943 * 299.99289 * 10 7 6 13 13 F 1.39897 * 109.47457 * 59.99381 * 10 7 6 14 14 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 15 15 N 1.30448 * 108.02337 * 359.61207 * 14 3 2 16 16 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 17 17 C 1.46503 * 125.75762 * 359.97438 * 16 2 1 18 18 C 1.50696 * 109.46974 * 90.00112 * 17 16 2 19 19 H 1.08001 * 120.00163 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99873 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99984 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00024 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47221 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46825 * 120.00079 * 22 20 18 25 25 H 1.48502 * 109.47073 * 240.00389 * 22 20 18 26 26 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 27 27 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 28 28 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 29 29 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 30 30 H 1.09001 * 109.47281 * 60.00295 * 8 7 6 31 31 H 1.09002 * 109.46837 * 180.02562 * 8 7 6 32 32 H 1.08998 * 109.46909 * 299.99663 * 8 7 6 33 33 H 1.09002 * 109.47337 * 59.99736 * 9 7 6 34 34 H 1.09002 * 109.47025 * 180.02562 * 9 7 6 35 35 H 1.09001 * 109.47264 * 300.00076 * 9 7 6 36 36 H 1.09001 * 109.47155 * 60.00044 * 11 10 7 37 37 H 1.09004 * 109.47253 * 179.97438 * 11 10 7 38 38 H 1.08994 * 109.47627 * 299.99497 * 11 10 7 39 39 H 1.08000 * 125.99145 * 179.77305 * 14 3 2 40 40 H 1.09004 * 109.46911 * 210.00324 * 17 16 2 41 41 H 1.09002 * 109.46643 * 329.99944 * 17 16 2 42 42 H 0.96997 * 120.00146 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 1.5300 5.1837 -1.2477 9 6 1.5185 5.1802 1.2508 10 6 3.5902 5.8251 0.0127 11 6 3.1353 7.2859 0.0121 12 9 4.3527 5.5742 1.1585 13 9 4.3643 5.5777 -1.1260 14 6 3.6589 0.6498 -0.0059 15 7 3.6340 -0.6545 -0.0007 16 7 2.3016 -1.0822 -0.0005 17 6 1.8500 -2.4759 -0.0006 18 6 1.6946 -2.9535 -1.4214 19 1 1.9103 -2.2855 -2.2423 20 6 1.2772 -4.2431 -1.6734 21 7 1.0141 -5.0563 -0.6739 22 14 1.0839 -4.8349 -3.4347 23 1 1.4392 -3.7359 -4.3680 24 1 1.9834 -5.9930 -3.6691 25 1 -0.3239 -5.2465 -3.6669 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 3.7462 3.2972 0.0098 30 1 0.6568 4.5314 -1.2526 31 1 1.2064 6.2246 -1.2479 32 1 2.1328 4.9909 -2.1351 33 1 2.1129 4.9847 2.1433 34 1 1.1941 6.2208 1.2505 35 1 0.6452 4.5278 1.2458 36 1 2.5321 7.4790 0.8991 37 1 4.0085 7.9384 0.0179 38 1 2.5415 7.4813 -0.8808 39 1 4.5448 1.2675 -0.0108 40 1 2.5848 -3.0960 0.5130 41 1 0.8915 -2.5472 0.5136 42 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892543787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:44 Heat of formation + Delta-G solvation = -95.403418 kcal Electronic energy + Delta-G solvation = -27080.901086 eV Core-core repulsion = 22925.219063 eV Total energy + Delta-G solvation = -4155.682023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.03616 -48.01385 -42.35624 -40.61454 -37.36787 -35.83838 -34.18544 -33.47487 -32.67456 -30.47548 -29.04453 -28.29837 -28.15013 -25.84630 -25.23024 -23.45279 -21.66527 -20.65324 -20.47811 -19.04917 -18.86065 -18.40970 -17.91553 -17.21424 -16.67549 -16.41947 -16.25359 -16.07875 -15.57243 -15.46205 -15.00878 -14.84876 -14.41159 -14.35101 -14.16703 -14.06866 -14.01701 -13.73756 -13.71014 -13.62361 -13.50531 -13.26181 -13.08349 -12.94859 -12.71767 -12.54142 -12.46871 -12.33972 -12.29184 -11.91725 -11.84277 -11.64469 -10.77499 -10.56297 -10.28693 -10.21054 -9.48061 -8.39240 -6.55616 0.66767 1.28985 1.35611 1.37873 1.48832 1.62075 2.12388 2.31819 2.50895 2.57691 2.92993 3.09806 3.41280 3.56137 3.68860 3.73168 3.95221 4.07564 4.12783 4.22831 4.45016 4.57802 4.62537 4.68438 4.69775 4.77570 4.78003 4.80998 4.88090 4.88501 4.99204 5.09015 5.16118 5.32632 5.37439 5.47631 5.49553 5.63251 5.73440 6.03647 6.50197 6.53666 6.81206 7.15657 7.29698 8.68997 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.002986 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.299797 B = 9375.228776 C = 9450.042365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.149 3.851 3 C -0.333 4.333 4 C 0.615 3.385 5 O -0.561 6.561 6 N -0.719 5.719 7 C 0.139 3.861 8 C -0.165 4.165 9 C -0.164 4.164 10 C 0.282 3.718 11 C -0.194 4.194 12 F -0.205 7.205 13 F -0.205 7.205 14 C 0.075 3.925 15 N -0.336 5.336 16 N -0.338 5.338 17 C 0.267 3.733 18 C -0.555 4.555 19 H 0.051 0.949 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.972 3.028 23 H -0.273 1.273 24 H -0.274 1.274 25 H -0.267 1.267 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.405 0.595 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.218 0.782 40 H 0.031 0.969 41 H 0.052 0.948 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 25.335 1.988 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.013 3.987 3 C -0.348 4.348 4 C 0.405 3.595 5 O -0.441 6.441 6 N -0.371 5.371 7 C 0.053 3.947 8 C -0.223 4.223 9 C -0.222 4.222 10 C 0.245 3.755 11 C -0.252 4.252 12 F -0.186 7.186 13 F -0.187 7.187 14 C -0.112 4.112 15 N -0.156 5.156 16 N -0.115 5.115 17 C 0.148 3.852 18 C -0.593 4.593 19 H 0.069 0.931 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.796 3.204 23 H -0.198 1.198 24 H -0.199 1.199 25 H -0.192 1.192 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.241 0.759 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.234 0.766 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.457 24.083 2.055 24.215 hybrid contribution 0.405 -0.587 -0.698 0.998 sum 1.862 23.497 1.357 23.609 Atomic orbital electron populations 1.20566 0.85514 1.04197 1.04007 1.21986 0.96034 0.86512 0.94171 1.19965 0.93082 0.93275 1.28470 1.16917 0.85040 0.83288 0.74231 1.90620 1.17152 1.84199 1.52178 1.45654 1.09963 1.04789 1.76696 1.21412 0.93378 0.80222 0.99736 1.22296 1.00657 1.04478 0.94847 1.22293 1.00567 1.04497 0.94841 1.21644 0.83666 0.99127 0.71036 1.22957 1.05316 0.89244 1.07646 1.93014 1.78380 1.95833 1.51333 1.93014 1.77815 1.95893 1.51936 1.24417 0.97758 0.91701 0.97299 1.77100 0.98491 1.14279 1.25709 1.49129 1.03319 1.07858 1.51191 1.19384 0.95311 0.72286 0.98191 1.21415 1.47918 0.98497 0.91516 0.93073 1.25731 0.93796 0.95903 1.02310 1.69999 1.44851 1.07609 1.32997 0.85288 0.78504 0.78156 0.78429 1.19770 1.19888 1.19206 0.89812 0.91127 0.87591 0.75895 0.91024 0.87955 0.92343 0.92128 0.88002 0.90942 0.87066 0.88729 0.87172 0.76608 0.95138 0.92984 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.05 9.57 71.24 0.68 -2.37 16 2 C 0.15 6.11 7.01 42.14 0.30 6.41 16 3 C -0.33 -12.00 6.13 -20.15 -0.12 -12.12 16 4 C 0.62 19.13 7.23 86.67 0.63 19.75 16 5 O -0.56 -18.82 11.04 -4.04 -0.04 -18.86 16 6 N -0.72 -17.32 4.96 -426.14 -2.11 -19.43 16 7 C 0.14 2.63 0.46 3.60 0.00 2.63 16 8 C -0.17 -3.00 7.93 71.98 0.57 -2.43 16 9 C -0.16 -2.88 7.92 71.98 0.57 -2.31 16 10 C 0.28 4.53 1.36 30.59 0.04 4.57 16 11 C -0.19 -1.60 8.68 71.98 0.62 -0.97 16 12 F -0.20 -3.92 16.40 44.97 0.74 -3.18 16 13 F -0.21 -4.02 16.41 44.97 0.74 -3.29 16 14 C 0.08 2.63 11.50 85.65 0.99 3.61 16 15 N -0.34 -14.87 12.50 -56.28 -0.70 -15.57 16 16 N -0.34 -15.80 3.56 -336.70 -1.20 -17.00 16 17 C 0.27 13.89 5.97 85.63 0.51 14.40 16 18 C -0.56 -30.82 9.39 25.60 0.24 -30.58 16 19 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 20 C 0.02 1.30 5.46 84.65 0.46 1.76 16 21 N -0.92 -51.39 13.29 21.45 0.28 -51.11 16 22 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 27 H 0.07 2.53 7.05 -2.39 -0.02 2.51 16 28 H 0.11 3.50 6.50 -2.39 -0.02 3.49 16 29 H 0.41 8.85 7.31 -92.71 -0.68 8.17 16 30 H 0.07 1.71 6.17 -2.39 -0.01 1.69 16 31 H 0.10 1.12 6.43 -2.39 -0.02 1.11 16 32 H 0.06 1.13 7.80 -2.39 -0.02 1.12 16 33 H 0.06 1.11 7.80 -2.39 -0.02 1.09 16 34 H 0.10 1.07 6.43 -2.39 -0.02 1.05 16 35 H 0.07 1.67 6.16 -2.39 -0.01 1.65 16 36 H 0.11 0.57 6.43 -2.39 -0.02 0.55 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.11 0.59 6.43 -2.39 -0.02 0.58 16 39 H 0.22 5.33 7.50 -2.91 -0.02 5.31 16 40 H 0.03 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.05 2.70 7.02 -2.39 -0.02 2.68 16 42 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -66.89 347.21 5.61 -61.29 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.39 Total: 19.92 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.49 Total: 2.37 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -3.73 Total: -103.11 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.04 Total: -18.86 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 1.48 Total: -6.47 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -66.89 5.61 -61.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892543787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.118 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds