Wall clock time and date at job start Tue Mar 31 2020 12:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38411 * 119.83761 * 2 1 4 4 C 1.37906 * 120.15317 * 179.72183 * 3 2 1 5 5 C 1.39737 * 119.84082 * 0.27475 * 4 3 2 6 6 C 1.47721 * 120.15823 * 179.97438 * 5 4 3 7 7 O 1.21549 * 119.99824 * 0.02562 * 6 5 4 8 8 C 1.47484 * 120.00242 * 180.02562 * 6 5 4 9 9 C 1.34376 * 119.99957 * 185.91906 * 8 6 5 10 10 C 1.47606 * 120.00033 * 30.26175 * 9 8 6 11 11 O 1.21538 * 120.00222 * 9.02186 * 10 9 8 12 12 N 1.34777 * 119.99870 * 189.01699 * 10 9 8 13 13 C 1.46498 * 120.00007 * 357.41613 * 12 10 9 14 14 C 1.50698 * 109.47398 * 90.00099 * 13 12 10 15 15 H 1.08010 * 119.99637 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00308 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00040 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00031 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47087 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47406 * 119.99788 * 18 16 14 21 21 H 1.48500 * 109.46703 * 239.99701 * 18 16 14 22 22 C 1.46502 * 119.99896 * 177.41479 * 12 10 9 23 23 C 1.52995 * 109.47285 * 121.28847 * 22 12 10 24 24 C 1.53008 * 109.46917 * 241.28929 * 22 12 10 25 25 C 1.39742 * 119.68519 * 0.02562 * 5 4 3 26 26 C 1.37898 * 119.84096 * 359.97438 * 25 5 4 27 27 H 1.09004 * 109.46792 * 89.99728 * 1 2 3 28 28 H 1.09003 * 109.47282 * 209.99688 * 1 2 3 29 29 H 1.09000 * 109.46974 * 330.00144 * 1 2 3 30 30 H 1.07998 * 119.92283 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.07748 * 180.25298 * 4 3 2 32 32 H 1.07997 * 119.99910 * 5.91810 * 8 6 5 33 33 H 1.08006 * 119.99897 * 210.25747 * 9 8 6 34 34 H 1.09006 * 109.46784 * 209.99698 * 13 12 10 35 35 H 1.08992 * 109.47270 * 329.99446 * 13 12 10 36 36 H 0.96994 * 120.00240 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47084 * 1.28554 * 22 12 10 38 38 H 1.09000 * 109.47299 * 59.99838 * 23 22 12 39 39 H 1.09000 * 109.47314 * 179.97438 * 23 22 12 40 40 H 1.08997 * 109.47204 * 300.00417 * 23 22 12 41 41 H 1.09000 * 109.47260 * 60.00194 * 24 22 12 42 42 H 1.08999 * 109.46639 * 180.02562 * 24 22 12 43 43 H 1.09000 * 109.46937 * 299.99715 * 24 22 12 44 44 H 1.07996 * 120.07582 * 179.97438 * 25 5 4 45 45 H 1.07998 * 119.92516 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2006 0.0000 4 6 3.5747 1.2082 0.0058 5 6 4.2767 0.0000 0.0059 6 6 5.7539 0.0000 0.0115 7 8 6.3617 1.0526 0.0165 8 6 6.4914 -1.2773 0.0109 9 6 7.8293 -1.2807 0.1360 10 6 8.5014 -0.2149 0.9050 11 8 7.8432 0.5695 1.5597 12 7 9.8450 -0.1117 0.8811 13 6 10.6418 -1.0910 0.1380 14 6 10.8319 -0.6131 -1.2785 15 1 10.4017 0.3262 -1.5938 16 6 11.5540 -1.3752 -2.1722 17 7 12.0773 -2.5191 -1.7884 18 14 11.7890 -0.7830 -3.9282 19 1 11.1057 0.5234 -4.1057 20 1 13.2388 -0.6258 -4.2078 21 1 11.2086 -1.7763 -4.8673 22 6 10.5086 0.9799 1.5982 23 6 11.4782 0.3980 2.6287 24 6 11.2820 1.8478 0.6033 25 6 3.5747 -1.2083 -0.0005 26 6 2.1958 -1.2006 -0.0063 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6518 2.1337 -0.0004 31 1 4.1108 2.1458 0.0099 32 1 5.9561 -2.2098 -0.0900 33 1 8.4129 -2.0633 -0.3260 34 1 11.6145 -1.2059 0.6163 35 1 10.1246 -2.0504 0.1315 36 1 12.5856 -3.0550 -2.4170 37 1 9.7606 1.5885 2.1063 38 1 12.2262 -0.2106 2.1207 39 1 11.9723 1.2101 3.1620 40 1 10.9272 -0.2203 3.3374 41 1 10.5912 2.2624 -0.1308 42 1 11.7761 2.6596 1.1370 43 1 12.0301 1.2392 0.0953 44 1 4.1109 -2.1457 -0.0009 45 1 1.6518 -2.1336 -0.0108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900470247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:32 Heat of formation + Delta-G solvation = -37.251410 kcal Electronic energy + Delta-G solvation = -25904.692526 eV Core-core repulsion = 22273.468942 eV Total energy + Delta-G solvation = -3631.223584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36950 -40.52287 -39.22702 -37.36673 -35.01100 -34.28619 -33.68789 -32.70464 -31.87459 -29.17511 -28.74869 -28.05770 -25.84363 -24.94539 -23.59556 -23.49110 -21.83656 -20.51070 -19.23356 -18.91129 -18.51195 -17.71878 -17.19114 -16.47129 -16.23312 -15.97156 -15.85704 -15.51295 -15.31214 -15.03757 -14.85438 -14.55368 -14.48918 -14.38953 -14.09183 -13.96606 -13.74989 -13.32849 -13.19218 -12.98191 -12.95198 -12.79223 -12.77651 -12.58940 -12.52891 -12.27832 -12.11465 -11.90305 -11.65009 -11.48633 -11.00875 -10.88904 -10.58833 -10.00603 -9.94613 -9.64748 -9.39222 -8.19112 -6.30825 -0.68151 0.15407 0.43465 1.37241 1.41634 1.51807 1.81069 2.27804 2.41962 2.45277 2.91708 3.06546 3.10586 3.69844 3.83833 3.95301 4.02367 4.08431 4.19348 4.24945 4.38123 4.40885 4.43776 4.48775 4.68119 4.77935 4.78494 4.81444 4.88091 4.89714 4.94959 4.96587 5.05676 5.09187 5.15498 5.17419 5.27025 5.36379 5.40637 5.45559 5.51854 5.59996 5.70199 5.91883 5.98886 6.09074 6.58699 6.68017 6.83968 7.33032 7.44758 8.86223 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.003359 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.225994 B = 8334.753362 C = 9307.621762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.060 4.060 3 C -0.139 4.139 4 C -0.083 4.083 5 C -0.182 4.182 6 C 0.398 3.602 7 O -0.463 6.463 8 C -0.162 4.162 9 C -0.118 4.118 10 C 0.522 3.478 11 O -0.572 6.572 12 N -0.589 5.589 13 C 0.249 3.751 14 C -0.533 4.533 15 H 0.043 0.957 16 C 0.027 3.973 17 N -0.916 5.916 18 Si 0.947 3.053 19 H -0.280 1.280 20 H -0.277 1.277 21 H -0.275 1.275 22 C 0.128 3.872 23 C -0.147 4.147 24 C -0.143 4.143 25 C -0.070 4.070 26 C -0.134 4.134 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.145 0.855 31 H 0.110 0.890 32 H 0.193 0.807 33 H 0.160 0.840 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.268 0.732 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.157 0.843 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.549 -0.420 3.969 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.060 4.060 3 C -0.157 4.157 4 C -0.101 4.101 5 C -0.183 4.183 6 C 0.278 3.722 7 O -0.340 6.340 8 C -0.181 4.181 9 C -0.139 4.139 10 C 0.312 3.688 11 O -0.454 6.454 12 N -0.320 5.320 13 C 0.129 3.871 14 C -0.571 4.571 15 H 0.062 0.938 16 C -0.174 4.174 17 N -0.556 5.556 18 Si 0.773 3.227 19 H -0.205 1.205 20 H -0.202 1.202 21 H -0.200 1.200 22 C 0.025 3.975 23 C -0.204 4.204 24 C -0.200 4.200 25 C -0.088 4.088 26 C -0.151 4.151 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.162 0.838 31 H 0.129 0.871 32 H 0.210 0.790 33 H 0.177 0.823 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.174 0.826 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.412 0.397 4.259 18.903 hybrid contribution 0.861 0.391 -1.127 1.471 sum -17.552 0.788 3.132 17.846 Atomic orbital electron populations 1.20936 0.88409 1.04255 1.03645 1.20628 0.98103 0.92670 0.94605 1.21251 0.92756 0.99493 1.02201 1.21417 0.95326 0.97302 0.96085 1.20498 0.93303 0.95890 1.08589 1.21329 0.89263 0.89036 0.72555 1.90663 1.71933 1.35754 1.35632 1.24159 0.93991 0.99709 1.00281 1.23947 0.95950 0.99577 0.94401 1.19130 0.82597 0.84544 0.82497 1.90685 1.65161 1.43877 1.45702 1.48301 1.05679 1.28752 1.49241 1.19156 0.91073 0.86912 0.89999 1.21619 1.33418 1.05873 0.96228 0.93823 1.25503 0.95114 0.94894 1.01855 1.69987 1.35668 1.13195 1.36703 0.85671 0.77948 0.78206 0.80841 1.20547 1.20227 1.20020 1.21037 0.94887 0.88427 0.93152 1.22027 0.98774 1.01844 0.97792 1.21996 0.99935 0.99474 0.98639 1.21746 0.95136 0.97066 0.94839 1.21433 0.93429 0.99147 1.01101 0.89631 0.89667 0.90561 0.83756 0.87143 0.79036 0.82300 0.95065 0.94908 0.92292 0.90720 0.92552 0.89299 0.92950 0.95253 0.89903 0.92191 0.82589 0.82113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.00 71.24 0.71 -0.37 16 2 C -0.06 -0.99 5.89 -19.78 -0.12 -1.11 16 3 C -0.14 -2.90 9.68 22.23 0.22 -2.68 16 4 C -0.08 -2.35 9.60 22.55 0.22 -2.14 16 5 C -0.18 -5.34 5.88 -20.04 -0.12 -5.46 16 6 C 0.40 14.82 6.52 27.22 0.18 15.00 16 7 O -0.46 -21.87 13.31 19.83 0.26 -21.61 16 8 C -0.16 -5.23 9.39 23.83 0.22 -5.01 16 9 C -0.12 -4.62 9.16 23.86 0.22 -4.40 16 10 C 0.52 24.19 6.98 86.72 0.61 24.79 16 11 O -0.57 -29.00 12.72 19.87 0.25 -28.75 16 12 N -0.59 -26.72 2.39 -805.85 -1.92 -28.65 16 13 C 0.25 12.01 4.35 85.63 0.37 12.38 16 14 C -0.53 -28.05 7.83 25.60 0.20 -27.84 16 15 H 0.04 2.44 7.62 -2.91 -0.02 2.42 16 16 C 0.03 1.40 5.46 84.65 0.46 1.87 16 17 N -0.92 -49.56 13.29 21.45 0.28 -49.28 16 18 Si 0.95 42.57 29.54 68.60 2.03 44.59 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.13 5.17 3.25 44.99 0.15 5.32 16 23 C -0.15 -4.88 9.15 71.98 0.66 -4.22 16 24 C -0.14 -5.56 8.51 71.98 0.61 -4.95 16 25 C -0.07 -1.45 9.46 22.55 0.21 -1.24 16 26 C -0.13 -2.16 9.68 22.23 0.22 -1.94 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 29 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 30 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.11 3.49 7.65 -2.91 -0.02 3.47 16 32 H 0.19 3.98 6.38 -2.91 -0.02 3.96 16 33 H 0.16 6.05 6.22 -2.91 -0.02 6.03 16 34 H 0.03 1.57 6.36 -2.38 -0.02 1.55 16 35 H 0.03 1.60 6.11 -2.39 -0.01 1.59 16 36 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 37 H 0.07 3.18 6.90 -2.39 -0.02 3.16 16 38 H 0.06 1.98 6.62 -2.39 -0.02 1.97 16 39 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.06 2.53 6.92 -2.39 -0.02 2.51 16 44 H 0.16 2.33 6.25 -2.91 -0.02 2.31 16 45 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -72.16 371.68 6.91 -65.25 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.99 Total: 20.44 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.02 Total: -2.00 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -1.64 Total: -77.92 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: 0.52 Total: -50.36 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -72.16 6.91 -65.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900470247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.002 kcal (2) G-P(sol) polarization free energy of solvation -72.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds