Wall clock time and date at job start Tue Mar 31 2020 12:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38419 * 119.84191 * 2 1 4 4 C 1.37894 * 120.15883 * 179.97438 * 3 2 1 5 5 C 1.39738 * 119.84072 * 359.97438 * 4 3 2 6 6 C 1.47722 * 120.16139 * 180.02562 * 5 4 3 7 7 O 1.21551 * 119.99660 * 0.02562 * 6 5 4 8 8 C 1.47478 * 120.00341 * 180.02562 * 6 5 4 9 9 C 1.34385 * 120.00289 * 180.02562 * 8 6 5 10 10 C 1.47599 * 120.00617 * 180.02562 * 9 8 6 11 11 O 1.21545 * 119.99850 * 5.20768 * 10 9 8 12 12 N 1.34772 * 120.00703 * 185.21408 * 10 9 8 13 13 C 1.46497 * 120.00545 * 185.33805 * 12 10 9 14 14 C 1.50701 * 109.47140 * 269.72181 * 13 12 10 15 15 H 1.07997 * 119.99818 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00353 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99474 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00115 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47136 * 60.00403 * 18 16 14 20 20 H 1.48507 * 109.46983 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47218 * 300.00418 * 18 16 14 22 22 C 1.46503 * 119.99852 * 5.05685 * 12 10 9 23 23 C 1.53001 * 109.47069 * 115.41126 * 22 12 10 24 24 C 1.52997 * 109.47359 * 235.41415 * 22 12 10 25 25 C 1.39743 * 119.68781 * 0.28109 * 5 4 3 26 26 C 1.37908 * 119.83501 * 359.44398 * 25 5 4 27 27 H 1.09003 * 109.47055 * 89.99531 * 1 2 3 28 28 H 1.09001 * 109.47713 * 210.00456 * 1 2 3 29 29 H 1.09004 * 109.47246 * 329.99983 * 1 2 3 30 30 H 1.07998 * 119.91576 * 359.95346 * 3 2 1 31 31 H 1.08004 * 120.08111 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.00084 * 0.02562 * 8 6 5 33 33 H 1.08007 * 119.99936 * 359.97438 * 9 8 6 34 34 H 1.09003 * 109.47230 * 29.71738 * 13 12 10 35 35 H 1.09000 * 109.47488 * 149.72421 * 13 12 10 36 36 H 0.97003 * 119.99538 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.46680 * 355.41807 * 22 12 10 38 38 H 1.09000 * 109.47195 * 65.03379 * 23 22 12 39 39 H 1.09001 * 109.47215 * 185.03337 * 23 22 12 40 40 H 1.08999 * 109.46968 * 305.03304 * 23 22 12 41 41 H 1.08999 * 109.47044 * 54.92157 * 24 22 12 42 42 H 1.09001 * 109.46981 * 174.91800 * 24 22 12 43 43 H 1.08996 * 109.47038 * 294.91975 * 24 22 12 44 44 H 1.07997 * 120.08253 * 179.70234 * 25 5 4 45 45 H 1.07995 * 119.92167 * 180.27558 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1957 1.2006 0.0000 4 6 3.5746 1.2083 0.0005 5 6 4.2767 0.0000 0.0016 6 6 5.7539 -0.0001 0.0028 7 8 6.3616 1.0526 0.0032 8 6 6.4913 -1.2773 0.0033 9 6 7.8351 -1.2773 0.0049 10 6 8.5732 -2.5555 0.0049 11 8 7.9694 -3.6059 -0.0921 12 7 9.9166 -2.5581 0.1125 13 6 10.6585 -3.8159 -0.0047 14 6 10.8061 -4.4410 1.3585 15 1 10.3886 -3.9507 2.2255 16 6 11.4732 -5.6395 1.4989 17 7 11.9812 -6.2368 0.4430 18 14 11.6555 -6.4146 3.1886 19 1 10.3105 -6.6841 3.7572 20 1 12.4077 -7.6896 3.0697 21 1 12.3938 -5.4863 4.0821 22 6 10.6356 -1.3022 0.3407 23 6 11.3195 -1.3473 1.7086 24 6 11.6906 -1.1129 -0.7511 25 6 3.5747 -1.2083 -0.0038 26 6 2.1957 -1.2006 0.0014 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6518 2.1336 -0.0008 31 1 4.1108 2.1458 0.0001 32 1 5.9513 -2.2126 0.0025 33 1 8.3752 -0.3420 0.0053 34 1 10.1166 -4.4976 -0.6603 35 1 11.6457 -3.6179 -0.4224 36 1 12.4508 -7.0798 0.5418 37 1 9.9315 -0.4705 0.3138 38 1 12.0865 -2.1217 1.7059 39 1 11.7792 -0.3812 1.9169 40 1 10.5799 -1.5711 2.4773 41 1 11.2149 -1.1709 -1.7300 42 1 12.1634 -0.1377 -0.6342 43 1 12.4450 -1.8950 -0.6667 44 1 4.1108 -2.1458 -0.0079 45 1 1.6518 -2.1336 0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900470248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:37 Heat of formation + Delta-G solvation = -49.510532 kcal Electronic energy + Delta-G solvation = -25206.974022 eV Core-core repulsion = 21575.218843 eV Total energy + Delta-G solvation = -3631.755179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.33013 -40.76934 -39.42860 -37.71521 -35.03566 -34.33257 -33.68252 -32.50975 -31.97306 -29.82301 -28.70087 -28.05578 -26.26503 -24.60149 -23.65000 -23.13347 -22.29845 -20.62712 -19.45895 -18.94107 -18.60953 -17.73898 -17.08409 -16.71106 -16.25932 -16.18122 -15.98986 -15.64976 -15.58354 -14.99048 -14.94405 -14.75888 -14.52948 -14.46403 -14.32457 -13.97031 -13.50882 -13.40834 -13.12166 -13.00675 -12.86608 -12.86211 -12.76062 -12.59581 -12.50385 -12.27620 -12.11438 -11.93623 -11.70640 -11.55672 -11.15123 -11.00756 -10.73475 -10.60398 -9.98447 -9.71368 -9.50723 -8.20030 -6.31605 -0.82630 0.11570 0.40487 1.36586 1.40063 1.47136 1.61072 2.08854 2.29679 2.41135 2.82757 2.85885 3.10212 3.55523 3.70174 3.86140 3.89398 3.98545 4.05115 4.12976 4.24045 4.34643 4.39035 4.44396 4.68690 4.76425 4.78267 4.84175 4.85858 4.87432 4.94268 5.01189 5.04693 5.10077 5.13071 5.21673 5.23366 5.32865 5.38853 5.39939 5.51210 5.57882 5.60881 5.82379 5.93794 6.08917 6.30729 6.64814 6.75914 7.21323 7.39443 8.87371 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.002740 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.398921 B =10215.145474 C =11212.320355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.052 4.052 3 C -0.138 4.138 4 C -0.066 4.066 5 C -0.189 4.189 6 C 0.432 3.568 7 O -0.473 6.473 8 C -0.154 4.154 9 C -0.110 4.110 10 C 0.518 3.482 11 O -0.583 6.583 12 N -0.584 5.584 13 C 0.262 3.738 14 C -0.527 4.527 15 H 0.053 0.947 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.961 3.039 19 H -0.279 1.279 20 H -0.280 1.280 21 H -0.262 1.262 22 C 0.118 3.882 23 C -0.151 4.151 24 C -0.155 4.155 25 C -0.073 4.073 26 C -0.141 4.141 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.153 0.847 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.161 0.839 34 H -0.004 1.004 35 H 0.033 0.967 36 H 0.266 0.734 37 H 0.110 0.890 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.045 0.955 44 H 0.138 0.862 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.521 17.409 -0.860 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.053 4.053 3 C -0.155 4.155 4 C -0.084 4.084 5 C -0.190 4.190 6 C 0.315 3.685 7 O -0.352 6.352 8 C -0.174 4.174 9 C -0.131 4.131 10 C 0.307 3.693 11 O -0.465 6.465 12 N -0.314 5.314 13 C 0.141 3.859 14 C -0.566 4.566 15 H 0.071 0.929 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.786 3.214 19 H -0.204 1.204 20 H -0.205 1.205 21 H -0.187 1.187 22 C 0.016 3.984 23 C -0.208 4.208 24 C -0.213 4.213 25 C -0.091 4.091 26 C -0.158 4.158 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.171 0.829 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.015 0.985 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.064 0.936 44 H 0.156 0.844 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.351 17.254 -0.966 25.207 hybrid contribution 0.611 -1.199 0.631 1.486 sum -17.740 16.055 -0.336 23.928 Atomic orbital electron populations 1.20962 0.88595 1.04301 1.03701 1.20647 0.98064 0.92739 0.93810 1.21335 0.93197 0.99213 1.01786 1.21506 0.95040 0.97267 0.94573 1.20285 0.93017 0.95664 1.10044 1.20780 0.89175 0.87505 0.71089 1.90566 1.71814 1.34766 1.38042 1.23894 0.95079 1.00026 0.98437 1.23677 0.95727 0.97592 0.96101 1.19073 0.82876 0.89530 0.77800 1.90720 1.68551 1.35007 1.52230 1.48348 1.05568 1.10038 1.67443 1.18783 0.90724 0.80323 0.96078 1.21585 1.34791 1.06339 0.93870 0.92896 1.25780 0.95312 0.97262 1.00740 1.70039 1.37863 1.18073 1.30903 0.85569 0.78103 0.77987 0.79786 1.20443 1.20485 1.18670 1.21571 0.95233 0.85144 0.96484 1.22084 1.00684 1.02690 0.95387 1.22113 0.98420 1.03195 0.97596 1.21720 0.95321 0.97377 0.94714 1.21372 0.93475 0.99282 1.01701 0.89567 0.90251 0.89966 0.82889 0.84782 0.83513 0.82175 0.98547 0.94868 0.92538 0.87207 0.93303 0.88987 0.94028 0.92641 0.88287 0.93578 0.84433 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.00 71.23 0.71 -0.16 16 2 C -0.05 -0.72 5.89 -19.78 -0.12 -0.83 16 3 C -0.14 -2.01 9.68 22.23 0.22 -1.80 16 4 C -0.07 -1.28 9.60 22.55 0.22 -1.07 16 5 C -0.19 -4.31 5.88 -20.04 -0.12 -4.43 16 6 C 0.43 11.64 7.10 27.22 0.19 11.83 16 7 O -0.47 -14.25 16.25 -3.88 -0.06 -14.32 16 8 C -0.15 -4.52 9.07 23.83 0.22 -4.30 16 9 C -0.11 -3.59 8.87 23.86 0.21 -3.38 16 10 C 0.52 22.44 7.62 86.71 0.66 23.10 16 11 O -0.58 -30.36 15.89 -3.86 -0.06 -30.42 16 12 N -0.58 -25.36 2.39 -805.85 -1.92 -27.28 16 13 C 0.26 14.06 4.71 85.63 0.40 14.46 16 14 C -0.53 -30.12 8.01 25.60 0.20 -29.91 16 15 H 0.05 3.01 7.59 -2.91 -0.02 2.99 16 16 C 0.01 0.44 5.46 84.65 0.46 0.91 16 17 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 18 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 22 C 0.12 3.84 3.17 44.99 0.14 3.98 16 23 C -0.15 -4.89 8.44 71.98 0.61 -4.28 16 24 C -0.16 -4.49 8.94 71.98 0.64 -3.84 16 25 C -0.07 -1.46 9.46 22.56 0.21 -1.25 16 26 C -0.14 -2.21 9.68 22.23 0.22 -2.00 16 27 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 29 H 0.08 0.43 8.08 -2.38 -0.02 0.41 16 30 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 31 H 0.13 2.52 7.65 -2.91 -0.02 2.50 16 32 H 0.15 4.28 5.83 -2.91 -0.02 4.26 16 33 H 0.16 4.44 5.34 -2.91 -0.02 4.42 16 34 H 0.00 -0.22 7.49 -2.39 -0.02 -0.24 16 35 H 0.03 1.80 6.30 -2.39 -0.02 1.79 16 36 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.11 2.91 5.20 -2.39 -0.01 2.90 16 38 H 0.05 1.88 7.28 -2.39 -0.02 1.86 16 39 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 42 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.05 1.55 6.77 -2.39 -0.02 1.53 16 44 H 0.14 2.64 6.23 -2.91 -0.02 2.63 16 45 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -74.64 377.24 6.34 -68.30 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.99 Total: 15.27 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.08 Total: -2.97 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -1.64 Total: -83.08 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -0.12 Total: -44.73 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.64 6.34 -68.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900470248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.792 kcal (2) G-P(sol) polarization free energy of solvation -74.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds