Wall clock time and date at job start Tue Mar 31 2020 12:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21242 * 120.00008 * 2 1 4 4 C 1.47287 * 119.99847 * 180.02562 * 2 1 3 5 5 C 1.39905 * 120.02174 * 353.98141 * 4 2 1 6 6 C 1.37666 * 119.97673 * 180.27653 * 5 4 2 7 7 C 1.39715 * 120.02092 * 359.47385 * 6 5 4 8 8 C 1.47853 * 119.97929 * 180.25319 * 7 6 5 9 9 O 1.21588 * 120.00548 * 211.32568 * 8 7 6 10 10 N 1.34781 * 119.99907 * 31.32543 * 8 7 6 11 11 C 1.36657 * 119.99815 * 5.80057 * 10 8 7 12 12 H 1.07994 * 120.00430 * 228.02069 * 11 10 8 13 13 C 1.39213 * 120.00178 * 48.01967 * 11 10 8 14 14 N 1.31265 * 119.99680 * 8.55706 * 13 11 10 15 15 Si 1.86797 * 120.00214 * 188.55420 * 13 11 10 16 16 H 1.48496 * 109.46942 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47115 * 120.00205 * 15 13 11 18 18 H 1.48502 * 109.46756 * 240.00099 * 15 13 11 19 19 C 1.46497 * 120.00266 * 185.79541 * 10 8 7 20 20 C 1.54267 * 110.03599 * 241.08734 * 19 10 8 21 21 C 1.54967 * 104.16024 * 217.13678 * 20 19 10 22 22 C 1.54890 * 102.77572 * 37.88715 * 21 20 19 23 23 C 1.53874 * 110.03205 * 123.86747 * 19 10 8 24 24 C 1.39678 * 120.04804 * 0.54515 * 7 6 5 25 25 C 1.37707 * 120.01831 * 359.70761 * 24 7 6 26 26 C 1.50699 * 120.01325 * 179.97438 * 25 24 7 27 27 H 1.08999 * 109.47093 * 185.21231 * 1 2 3 28 28 H 1.08997 * 109.46919 * 305.21395 * 1 2 3 29 29 H 1.09003 * 109.46905 * 65.21311 * 1 2 3 30 30 H 1.08002 * 120.01103 * 359.97438 * 5 4 2 31 31 H 1.08003 * 119.98778 * 179.71980 * 6 5 4 32 32 H 0.97001 * 119.99934 * 184.98079 * 14 13 11 33 33 H 1.09001 * 110.01435 * 2.48115 * 19 10 8 34 34 H 1.09005 * 110.48255 * 335.78324 * 20 19 10 35 35 H 1.09001 * 110.48738 * 98.42897 * 20 19 10 36 36 H 1.08994 * 110.71963 * 279.57759 * 21 20 19 37 37 H 1.09001 * 110.92306 * 156.28986 * 21 20 19 38 38 H 1.09005 * 110.48782 * 203.40400 * 22 21 20 39 39 H 1.09001 * 110.59861 * 80.81782 * 22 21 20 40 40 H 1.08997 * 110.03461 * 238.57550 * 23 19 10 41 41 H 1.09003 * 110.03001 * 359.95520 * 23 19 10 42 42 H 1.08000 * 119.99748 * 179.73034 * 24 7 6 43 43 H 1.08995 * 109.47541 * 262.09741 * 26 25 24 44 44 H 1.09006 * 109.47160 * 22.09736 * 26 25 24 45 45 H 1.09003 * 109.47283 * 142.09208 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2434 -1.2756 -0.0006 5 6 1.5501 -2.4841 0.1259 6 6 2.2399 -3.6755 0.1310 7 6 3.6308 -3.6786 -0.0012 8 6 4.3701 -4.9590 -0.0012 9 8 5.5001 -5.0086 0.4447 10 7 3.7913 -6.0713 -0.4956 11 6 2.5701 -5.9934 -1.1039 12 1 1.7884 -6.6890 -0.8368 13 6 2.3336 -5.0173 -2.0679 14 7 3.3251 -4.2822 -2.5146 15 14 0.6053 -4.7538 -2.7260 16 1 -0.3258 -5.7039 -2.0660 17 1 0.1750 -3.3610 -2.4431 18 1 0.5931 -4.9876 -4.1924 19 6 4.4715 -7.3638 -0.3810 20 6 4.7502 -7.9406 -1.7844 21 6 4.5286 -9.4653 -1.6185 22 6 3.3198 -9.5325 -0.6524 23 6 3.5627 -8.3756 0.3387 24 6 4.3240 -2.4725 -0.1271 25 6 3.6364 -1.2794 -0.1272 26 6 4.3845 0.0217 -0.2625 27 1 -0.3633 -1.0234 0.0934 28 1 -0.3633 0.5926 0.8396 29 1 -0.3633 0.4309 -0.9330 30 1 0.4746 -2.4822 0.2244 31 1 1.7052 -4.6084 0.2331 32 1 3.1498 -3.5547 -3.1317 33 1 5.4064 -7.2460 0.1668 34 1 4.0495 -7.5302 -2.5115 35 1 5.7776 -7.7341 -2.0846 36 1 5.4051 -9.9362 -1.1737 37 1 4.2854 -9.9296 -2.5742 38 1 3.3037 -10.4876 -0.1273 39 1 2.3865 -9.3807 -1.1947 40 1 4.0570 -8.7496 1.2353 41 1 2.6159 -7.9047 0.6035 42 1 5.3996 -2.4756 -0.2248 43 1 4.5342 0.4591 0.7246 44 1 5.3523 -0.1624 -0.7289 45 1 3.8081 0.7097 -0.8811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906761899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:38 Heat of formation + Delta-G solvation = -43.136401 kcal Electronic energy + Delta-G solvation = -27506.112842 eV Core-core repulsion = 23874.634066 eV Total energy + Delta-G solvation = -3631.478776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.91304 -39.09331 -37.51509 -36.36072 -34.44209 -32.18051 -31.67157 -31.10843 -28.97600 -28.06310 -27.26388 -26.22119 -25.05101 -23.59319 -21.00734 -20.27290 -20.08810 -19.47425 -19.15752 -16.92224 -16.20642 -15.99058 -15.42919 -15.20326 -14.82510 -14.56389 -14.53918 -14.14185 -13.75157 -13.63826 -13.24808 -12.92863 -12.86467 -12.71079 -12.49219 -12.01069 -11.90101 -11.82262 -11.74338 -11.54141 -11.44592 -11.18442 -11.01261 -10.79381 -10.72119 -10.56613 -10.46343 -10.44874 -10.29463 -10.07471 -9.75596 -9.19935 -9.12860 -8.61422 -8.09786 -7.76053 -7.37779 -6.46264 -4.25600 1.15537 2.18046 2.75962 3.05818 3.12384 3.15845 3.90030 4.01853 4.43049 4.54281 4.84502 4.94732 5.22067 5.26371 5.27322 5.31522 5.46295 5.51290 5.51929 5.75827 5.83727 5.96615 5.99443 6.09764 6.14324 6.15147 6.21374 6.22882 6.23730 6.30351 6.35771 6.41176 6.43213 6.45256 6.61853 6.63303 6.79619 6.83305 6.96672 7.02899 7.12599 7.19207 7.32643 7.38536 7.64954 7.80469 7.89083 8.54384 8.80703 9.45176 9.87597 10.56060 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.004986 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.261075 B = 5614.886478 C = 6425.011177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.396 3.604 3 O -0.471 6.471 4 C -0.187 4.187 5 C -0.099 4.099 6 C -0.088 4.088 7 C 0.008 3.992 8 C 0.548 3.452 9 O -0.602 6.602 10 N -0.440 5.440 11 C -0.349 4.349 12 H 0.088 0.912 13 C 0.059 3.941 14 N -0.847 5.847 15 Si 0.895 3.105 16 H -0.265 1.265 17 H -0.269 1.269 18 H -0.281 1.281 19 C 0.134 3.866 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.091 4.091 25 C -0.041 4.041 26 C -0.111 4.111 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.273 0.727 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.452 -0.694 2.590 6.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.277 3.723 3 O -0.349 6.349 4 C -0.188 4.188 5 C -0.118 4.118 6 C -0.107 4.107 7 C 0.004 3.996 8 C 0.338 3.662 9 O -0.488 6.488 10 N -0.158 5.158 11 C -0.477 4.477 12 H 0.105 0.895 13 C -0.150 4.150 14 N -0.480 5.480 15 Si 0.720 3.280 16 H -0.189 1.189 17 H -0.194 1.194 18 H -0.207 1.207 19 C 0.030 3.970 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.166 4.166 24 C -0.110 4.110 25 C -0.041 4.041 26 C -0.167 4.167 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.139 0.861 31 H 0.169 0.831 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.140 0.860 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.535 -0.102 2.604 5.230 hybrid contribution -0.969 0.036 -0.866 1.300 sum -5.504 -0.066 1.739 5.772 Atomic orbital electron populations 1.22237 0.94843 1.04692 1.04143 1.22479 0.91191 0.88033 0.70605 1.90437 1.71584 1.34888 1.38030 1.20110 0.93900 0.94207 1.10582 1.21271 0.99042 0.91752 0.99688 1.21766 0.93862 0.98325 0.96710 1.19838 0.93569 0.93298 0.92851 1.18206 0.85481 0.84526 0.77985 1.90600 1.19423 1.86454 1.52334 1.43140 1.18157 1.04228 1.50318 1.19149 0.89358 1.19808 1.19378 0.89460 1.25517 0.98195 0.97287 0.94011 1.69716 1.30546 1.18141 1.29635 0.86384 0.83134 0.79212 0.79244 1.18879 1.19430 1.20673 1.21587 0.95311 0.84689 0.95430 1.22598 1.01217 0.93562 0.98643 1.22447 0.97708 0.97159 0.98733 1.22256 0.98588 0.97350 0.97212 1.22412 1.00826 0.95906 0.97459 1.20872 0.99732 0.90570 0.99808 1.19872 0.92314 0.95323 0.96606 1.20946 0.99023 0.94470 1.02276 0.89783 0.89440 0.89279 0.86140 0.83054 0.91545 0.90219 0.89579 0.92949 0.92439 0.92375 0.92876 0.91639 0.92779 0.90818 0.86039 0.91521 0.92710 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.45 10.19 36.01 0.37 -2.08 16 2 C 0.40 6.47 7.16 -30.63 -0.22 6.25 16 3 O -0.47 -8.55 14.09 5.59 0.08 -8.47 16 4 C -0.19 -3.43 5.87 -104.99 -0.62 -4.05 16 5 C -0.10 -1.78 9.31 -39.17 -0.36 -2.14 16 6 C -0.09 -1.79 6.09 -39.24 -0.24 -2.03 16 7 C 0.01 0.18 3.49 -104.87 -0.37 -0.19 16 8 C 0.55 13.63 6.66 -12.32 -0.08 13.55 16 9 O -0.60 -16.32 16.09 5.29 0.09 -16.24 16 10 N -0.44 -10.12 2.44 -107.61 -0.26 -10.39 16 11 C -0.35 -7.81 5.04 -15.04 -0.08 -7.89 16 12 H 0.09 1.89 6.94 -52.49 -0.36 1.52 16 13 C 0.06 1.35 3.00 -17.43 -0.05 1.29 16 14 N -0.85 -20.97 10.96 55.51 0.61 -20.36 16 15 Si 0.89 17.90 28.46 -169.99 -4.84 13.06 16 16 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 17 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 C 0.13 2.75 3.28 -66.81 -0.22 2.53 16 20 C -0.12 -2.34 6.42 -25.03 -0.16 -2.50 16 21 C -0.12 -1.87 6.91 -24.70 -0.17 -2.04 16 22 C -0.12 -1.74 6.83 -25.07 -0.17 -1.91 16 23 C -0.13 -2.18 6.21 -25.61 -0.16 -2.34 16 24 C -0.09 -1.97 9.19 -39.24 -0.36 -2.34 16 25 C -0.04 -0.80 5.91 -104.21 -0.62 -1.42 16 26 C -0.11 -1.92 8.67 36.01 0.31 -1.61 16 27 H 0.08 0.93 5.62 -51.93 -0.29 0.64 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.12 1.77 5.94 -52.49 -0.31 1.46 16 31 H 0.15 3.04 5.57 -52.48 -0.29 2.74 16 32 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.08 1.75 6.97 -51.93 -0.36 1.39 16 34 H 0.09 1.86 7.16 -51.93 -0.37 1.49 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.31 6.72 -51.93 -0.35 0.97 16 42 H 0.12 2.70 7.92 -52.49 -0.42 2.28 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.88 8.02 -51.93 -0.42 0.47 16 45 H 0.08 1.46 5.94 -51.93 -0.31 1.15 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -27.57 352.00 -8.64 -36.22 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.42 Total: 9.79 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -3.20 Total: -8.91 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.35 Total: -30.75 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.16 Total: -24.71 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -4.84 Total: 13.06 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.57 -8.64 -36.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906761899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.921 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds