Wall clock time and date at job start Tue Mar 31 2020 12:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38413 * 119.83877 * 2 1 4 4 C 1.37898 * 120.15415 * 179.74304 * 3 2 1 5 5 C 1.39736 * 119.84085 * 0.26459 * 4 3 2 6 6 C 1.47731 * 120.15522 * 180.02562 * 5 4 3 7 7 O 1.21545 * 119.99773 * 359.97438 * 6 5 4 8 8 C 1.47479 * 119.99899 * 179.97438 * 6 5 4 9 9 C 1.34377 * 120.00072 * 179.97438 * 8 6 5 10 10 C 1.47607 * 120.00047 * 179.97438 * 9 8 6 11 11 O 1.21543 * 120.00242 * 0.02562 * 10 9 8 12 12 N 1.34785 * 120.00236 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00197 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.46973 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.47330 * 299.99713 * 14 13 12 16 16 C 1.52992 * 109.47519 * 59.99806 * 14 13 12 17 17 C 1.50706 * 109.47069 * 179.97438 * 14 13 12 18 18 H 1.07990 * 119.99884 * 1.34924 * 17 14 13 19 19 C 1.37884 * 119.99934 * 181.34161 * 17 14 13 20 20 N 1.31516 * 119.99812 * 193.97233 * 19 17 14 21 21 Si 1.86802 * 119.99876 * 13.98340 * 19 17 14 22 22 H 1.48497 * 109.47178 * 84.54187 * 21 19 17 23 23 H 1.48499 * 109.46917 * 204.54337 * 21 19 17 24 24 H 1.48501 * 109.46812 * 324.54118 * 21 19 17 25 25 C 1.39738 * 119.68754 * 359.97438 * 5 4 3 26 26 C 1.37900 * 119.83552 * 0.02562 * 25 5 4 27 27 H 1.09004 * 109.47308 * 89.99771 * 1 2 3 28 28 H 1.08997 * 109.46897 * 210.00081 * 1 2 3 29 29 H 1.09004 * 109.46993 * 329.99420 * 1 2 3 30 30 H 1.07998 * 119.92237 * 0.02714 * 3 2 1 31 31 H 1.08010 * 120.07742 * 180.27587 * 4 3 2 32 32 H 1.08003 * 119.99986 * 0.02562 * 8 6 5 33 33 H 1.07997 * 120.00333 * 0.02562 * 9 8 6 34 34 H 0.97002 * 119.99570 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.47075 * 300.00238 * 13 12 10 36 36 H 1.09005 * 109.47125 * 59.99709 * 13 12 10 37 37 H 1.08998 * 109.46809 * 69.36884 * 15 14 13 38 38 H 1.09001 * 109.47542 * 189.37024 * 15 14 13 39 39 H 1.09004 * 109.46700 * 309.36918 * 15 14 13 40 40 H 1.09004 * 109.47567 * 59.99910 * 16 14 13 41 41 H 1.09004 * 109.47577 * 179.97438 * 16 14 13 42 42 H 1.09004 * 109.46994 * 300.00112 * 16 14 13 43 43 H 0.97001 * 119.99587 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.07887 * 180.02562 * 25 5 4 45 45 H 1.08001 * 119.91689 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2006 0.0000 4 6 3.5747 1.2082 0.0053 5 6 4.2767 0.0000 0.0052 6 6 5.7540 0.0000 0.0115 7 8 6.3616 1.0527 0.0163 8 6 6.4914 -1.2772 0.0118 9 6 7.8351 -1.2772 0.0170 10 6 8.5732 -2.5555 0.0180 11 8 7.9655 -3.6081 0.0136 12 7 9.9210 -2.5556 0.0237 13 6 10.6535 -3.8242 0.0241 14 6 12.1576 -3.5447 0.0317 15 6 12.5331 -2.7394 -1.2139 16 6 12.5215 -2.7453 1.2844 17 6 12.9112 -4.8498 0.0327 18 1 12.3715 -5.7848 0.0063 19 6 14.2896 -4.8500 0.0672 20 7 14.9540 -5.9515 -0.2064 21 14 15.2131 -3.2858 0.5027 22 1 15.3084 -3.1621 1.9795 23 1 16.5785 -3.3390 -0.0787 24 1 14.4866 -2.1128 -0.0464 25 6 3.5747 -1.2083 0.0001 26 6 2.1957 -1.2006 -0.0052 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6518 2.1337 0.0004 31 1 4.1108 2.1459 0.0098 32 1 5.9514 -2.2125 0.0071 33 1 8.3752 -0.3419 0.0213 34 1 10.4060 -1.7155 0.0268 35 1 10.3863 -4.3977 0.9117 36 1 10.3939 -4.3939 -0.8683 37 1 12.1216 -1.7333 -1.1338 38 1 13.6185 -2.6826 -1.2964 39 1 12.1266 -3.2288 -2.0991 40 1 12.2541 -3.3189 2.1720 41 1 13.5932 -2.5465 1.2901 42 1 11.9764 -1.8013 1.2841 43 1 15.9237 -5.9517 -0.1817 44 1 4.1108 -2.1457 0.0004 45 1 1.6519 -2.1336 -0.0087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909881471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:24 Heat of formation + Delta-G solvation = -22.454120 kcal Electronic energy + Delta-G solvation = -24600.827305 eV Core-core repulsion = 20970.245380 eV Total energy + Delta-G solvation = -3630.581925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.44401 -39.53638 -38.68102 -36.84120 -33.57067 -33.42583 -32.93898 -31.54340 -31.33314 -28.38341 -26.63424 -26.38740 -25.16071 -24.32729 -23.06063 -22.15969 -20.41384 -19.50172 -18.91457 -18.09731 -16.69219 -16.17982 -16.10925 -15.63014 -15.38829 -15.12543 -15.05894 -14.76710 -14.71226 -14.24423 -14.09682 -13.94760 -13.57230 -13.26916 -12.94231 -12.69065 -12.66340 -12.38991 -12.34158 -12.22187 -12.07453 -12.05473 -11.38833 -11.37803 -10.48960 -10.37755 -10.24997 -10.20938 -10.10481 -10.00288 -9.78244 -9.39849 -9.16209 -9.12674 -8.72101 -8.64892 -8.48468 -6.17441 -4.15044 0.01603 0.89694 0.98863 2.45897 3.22347 3.25300 3.29476 3.30704 3.37254 3.52756 3.88319 4.33174 4.33452 4.38439 4.54984 4.69540 4.82703 4.87478 5.00428 5.07533 5.11402 5.13171 5.23808 5.29377 5.56611 5.59012 5.68023 5.76203 5.88497 5.95581 6.00017 6.01691 6.06665 6.11128 6.32061 6.42361 6.47435 6.48570 6.57493 6.65006 6.67419 6.90221 7.16751 7.18367 7.38281 7.68069 7.77284 8.36089 8.44035 8.87525 9.46226 10.95477 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.037799 B = 0.002045 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.586011 B =13688.497233 C =14215.791706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.056 4.056 3 C -0.136 4.136 4 C -0.057 4.057 5 C -0.168 4.168 6 C 0.424 3.576 7 O -0.450 6.450 8 C -0.164 4.164 9 C -0.104 4.104 10 C 0.528 3.472 11 O -0.540 6.540 12 N -0.709 5.709 13 C 0.140 3.860 14 C 0.027 3.973 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.514 4.514 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.890 5.890 21 Si 0.885 3.115 22 H -0.286 1.286 23 H -0.305 1.305 24 H -0.249 1.249 25 C -0.065 4.065 26 C -0.134 4.134 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.148 0.852 33 H 0.139 0.861 34 H 0.400 0.600 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.022 0.978 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.030 0.970 43 H 0.265 0.735 44 H 0.137 0.863 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.580 14.637 0.395 29.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.056 4.056 3 C -0.154 4.154 4 C -0.075 4.075 5 C -0.169 4.169 6 C 0.304 3.696 7 O -0.327 6.327 8 C -0.185 4.185 9 C -0.126 4.126 10 C 0.314 3.686 11 O -0.419 6.419 12 N -0.359 5.359 13 C 0.018 3.982 14 C 0.026 3.974 15 C -0.201 4.201 16 C -0.206 4.206 17 C -0.552 4.552 18 H 0.095 0.905 19 C -0.127 4.127 20 N -0.526 5.526 21 Si 0.718 3.282 22 H -0.213 1.213 23 H -0.234 1.234 24 H -0.175 1.175 25 C -0.083 4.083 26 C -0.152 4.152 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.166 0.834 33 H 0.157 0.843 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.155 0.845 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.476 14.301 0.372 29.218 hybrid contribution 0.953 1.068 0.320 1.467 sum -24.523 15.369 0.693 28.949 Atomic orbital electron populations 1.20894 0.90804 1.03232 1.02778 1.20255 0.96455 0.93220 0.95657 1.21038 0.93898 0.97885 1.02584 1.21382 0.94066 0.97781 0.94269 1.20359 0.94227 0.94518 1.07778 1.20719 0.88302 0.88499 0.72045 1.90604 1.71201 1.34428 1.36441 1.23729 0.95364 0.99353 1.00011 1.23700 0.95581 0.98734 0.94567 1.18531 0.82964 0.88961 0.78104 1.90773 1.68359 1.32807 1.49971 1.46282 1.05582 1.11677 1.72380 1.21602 0.91806 0.82979 1.01834 1.18740 0.90788 0.96286 0.91578 1.22309 1.01682 0.96801 0.99265 1.22371 0.99705 0.98195 1.00284 1.20691 0.91138 0.91076 1.52250 0.90502 1.24977 0.97520 0.96050 0.94185 1.69950 1.07743 1.28016 1.46913 0.87295 0.77635 0.84977 0.78313 1.21336 1.23356 1.17513 1.21571 0.94387 0.97651 0.94675 1.21073 0.94024 0.97933 1.02184 0.90618 0.91086 0.91198 0.85383 0.84799 0.83450 0.84281 0.76488 0.91616 0.91513 0.95887 0.92432 0.93335 0.92717 0.93955 0.95137 0.92525 0.84485 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.00 36.01 0.36 -0.15 16 2 C -0.06 -0.38 5.89 -104.49 -0.62 -0.99 16 3 C -0.14 -0.99 9.68 -39.64 -0.38 -1.37 16 4 C -0.06 -0.51 9.60 -39.15 -0.38 -0.88 16 5 C -0.17 -1.66 5.88 -104.90 -0.62 -2.27 16 6 C 0.42 4.85 7.10 -31.94 -0.23 4.62 16 7 O -0.45 -6.12 16.25 5.33 0.09 -6.03 16 8 C -0.16 -1.88 9.07 -37.18 -0.34 -2.22 16 9 C -0.10 -1.30 9.60 -37.12 -0.36 -1.66 16 10 C 0.53 8.33 7.78 -12.43 -0.10 8.24 16 11 O -0.54 -10.25 16.25 5.33 0.09 -10.16 16 12 N -0.71 -11.31 5.00 -61.34 -0.31 -11.62 16 13 C 0.14 2.72 4.49 -4.05 -0.02 2.71 16 14 C 0.03 0.58 0.50 -155.66 -0.08 0.51 16 15 C -0.14 -2.87 7.53 37.16 0.28 -2.59 16 16 C -0.15 -2.96 7.52 37.15 0.28 -2.68 16 17 C -0.51 -13.60 8.62 -34.44 -0.30 -13.89 16 18 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 19 C 0.08 2.08 5.32 -17.82 -0.09 1.98 16 20 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 21 Si 0.89 20.92 22.79 -169.99 -3.87 17.05 16 22 H -0.29 -6.74 7.10 56.52 0.40 -6.34 16 23 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.25 -5.35 4.65 56.52 0.26 -5.09 16 25 C -0.06 -0.54 9.46 -39.14 -0.37 -0.91 16 26 C -0.13 -0.96 9.68 -39.64 -0.38 -1.34 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 29 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 30 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 31 H 0.13 1.15 7.65 -52.48 -0.40 0.75 16 32 H 0.15 1.57 5.82 -52.48 -0.31 1.27 16 33 H 0.14 1.52 7.53 -52.49 -0.40 1.13 16 34 H 0.40 5.53 6.24 -40.82 -0.25 5.28 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.02 0.38 7.13 -51.93 -0.37 0.01 16 38 H 0.06 1.23 4.30 -51.93 -0.22 1.01 16 39 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 42 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.14 0.98 6.23 -52.49 -0.33 0.65 16 45 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -31.93 364.12 -7.32 -39.25 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.24 Total: 4.53 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -3.33 Total: -12.91 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.47 Total: -37.21 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.17 Total: -16.19 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -3.87 Total: 17.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.93 -7.32 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909881471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.796 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds