Wall clock time and date at job start Tue Mar 31 2020 12:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38413 * 119.83877 * 2 1 4 4 C 1.37898 * 120.15415 * 179.74304 * 3 2 1 5 5 C 1.39736 * 119.84085 * 0.26459 * 4 3 2 6 6 C 1.47731 * 120.15522 * 180.02562 * 5 4 3 7 7 O 1.21545 * 119.99773 * 359.97438 * 6 5 4 8 8 C 1.47479 * 119.99899 * 179.97438 * 6 5 4 9 9 C 1.34377 * 120.00072 * 179.97438 * 8 6 5 10 10 C 1.47607 * 120.00047 * 179.97438 * 9 8 6 11 11 O 1.21543 * 120.00242 * 0.02562 * 10 9 8 12 12 N 1.34785 * 120.00236 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00197 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.46973 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.47330 * 299.99713 * 14 13 12 16 16 C 1.52992 * 109.47519 * 59.99806 * 14 13 12 17 17 C 1.50706 * 109.47069 * 179.97438 * 14 13 12 18 18 H 1.07990 * 119.99884 * 1.34924 * 17 14 13 19 19 C 1.37884 * 119.99934 * 181.34161 * 17 14 13 20 20 N 1.31516 * 119.99812 * 193.97233 * 19 17 14 21 21 Si 1.86802 * 119.99876 * 13.98340 * 19 17 14 22 22 H 1.48497 * 109.47178 * 84.54187 * 21 19 17 23 23 H 1.48499 * 109.46917 * 204.54337 * 21 19 17 24 24 H 1.48501 * 109.46812 * 324.54118 * 21 19 17 25 25 C 1.39738 * 119.68754 * 359.97438 * 5 4 3 26 26 C 1.37900 * 119.83552 * 0.02562 * 25 5 4 27 27 H 1.09004 * 109.47308 * 89.99771 * 1 2 3 28 28 H 1.08997 * 109.46897 * 210.00081 * 1 2 3 29 29 H 1.09004 * 109.46993 * 329.99420 * 1 2 3 30 30 H 1.07998 * 119.92237 * 0.02714 * 3 2 1 31 31 H 1.08010 * 120.07742 * 180.27587 * 4 3 2 32 32 H 1.08003 * 119.99986 * 0.02562 * 8 6 5 33 33 H 1.07997 * 120.00333 * 0.02562 * 9 8 6 34 34 H 0.97002 * 119.99570 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.47075 * 300.00238 * 13 12 10 36 36 H 1.09005 * 109.47125 * 59.99709 * 13 12 10 37 37 H 1.08998 * 109.46809 * 69.36884 * 15 14 13 38 38 H 1.09001 * 109.47542 * 189.37024 * 15 14 13 39 39 H 1.09004 * 109.46700 * 309.36918 * 15 14 13 40 40 H 1.09004 * 109.47567 * 59.99910 * 16 14 13 41 41 H 1.09004 * 109.47577 * 179.97438 * 16 14 13 42 42 H 1.09004 * 109.46994 * 300.00112 * 16 14 13 43 43 H 0.97001 * 119.99587 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.07887 * 180.02562 * 25 5 4 45 45 H 1.08001 * 119.91689 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2006 0.0000 4 6 3.5747 1.2082 0.0053 5 6 4.2767 0.0000 0.0052 6 6 5.7540 0.0000 0.0115 7 8 6.3616 1.0527 0.0163 8 6 6.4914 -1.2772 0.0118 9 6 7.8351 -1.2772 0.0170 10 6 8.5732 -2.5555 0.0180 11 8 7.9655 -3.6081 0.0136 12 7 9.9210 -2.5556 0.0237 13 6 10.6535 -3.8242 0.0241 14 6 12.1576 -3.5447 0.0317 15 6 12.5331 -2.7394 -1.2139 16 6 12.5215 -2.7453 1.2844 17 6 12.9112 -4.8498 0.0327 18 1 12.3715 -5.7848 0.0063 19 6 14.2896 -4.8500 0.0672 20 7 14.9540 -5.9515 -0.2064 21 14 15.2131 -3.2858 0.5027 22 1 15.3084 -3.1621 1.9795 23 1 16.5785 -3.3390 -0.0787 24 1 14.4866 -2.1128 -0.0464 25 6 3.5747 -1.2083 0.0001 26 6 2.1957 -1.2006 -0.0052 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6518 2.1337 0.0004 31 1 4.1108 2.1459 0.0098 32 1 5.9514 -2.2125 0.0071 33 1 8.3752 -0.3419 0.0213 34 1 10.4060 -1.7155 0.0268 35 1 10.3863 -4.3977 0.9117 36 1 10.3939 -4.3939 -0.8683 37 1 12.1216 -1.7333 -1.1338 38 1 13.6185 -2.6826 -1.2964 39 1 12.1266 -3.2288 -2.0991 40 1 12.2541 -3.3189 2.1720 41 1 13.5932 -2.5465 1.2901 42 1 11.9764 -1.8013 1.2841 43 1 15.9237 -5.9517 -0.1817 44 1 4.1108 -2.1457 0.0004 45 1 1.6519 -2.1336 -0.0087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909881471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:24 Heat of formation + Delta-G solvation = -42.391624 kcal Electronic energy + Delta-G solvation = -24601.691860 eV Core-core repulsion = 20970.245380 eV Total energy + Delta-G solvation = -3631.446480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.30197 -40.76307 -39.44336 -38.46732 -35.05867 -34.39858 -33.75183 -33.36089 -31.95682 -29.07751 -28.05955 -27.85186 -27.03606 -25.45411 -23.64507 -23.01532 -21.46702 -21.01154 -20.06834 -19.13682 -18.10205 -17.65631 -17.18527 -16.92474 -16.42325 -16.39439 -16.18117 -15.71751 -15.61860 -15.12965 -14.95989 -14.82468 -14.68217 -14.52528 -14.49902 -14.31277 -14.01447 -13.76125 -13.28725 -13.00536 -12.98016 -12.86211 -12.59315 -12.39872 -12.18272 -11.96513 -11.92886 -11.77324 -11.33626 -11.08658 -11.02505 -10.92494 -10.62047 -10.40270 -10.06403 -9.98047 -9.70848 -8.30240 -6.31744 -0.83266 0.10174 0.40848 1.37089 1.37778 1.50792 1.57983 2.06618 2.21971 2.34589 2.83122 2.92546 3.05953 3.67138 3.80720 3.90424 3.96161 4.04181 4.09834 4.14325 4.31518 4.36554 4.40351 4.42952 4.70585 4.74367 4.77795 4.81892 4.84323 4.85410 4.88148 4.93062 5.02227 5.05827 5.12042 5.15302 5.23331 5.32600 5.37791 5.39854 5.50978 5.58446 5.70679 5.78337 5.93910 6.29215 6.32019 6.51952 6.72622 7.13653 7.33035 8.86644 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.037799 B = 0.002045 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.586011 B =13688.497233 C =14215.791706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.068 4.068 5 C -0.191 4.191 6 C 0.429 3.571 7 O -0.475 6.475 8 C -0.149 4.149 9 C -0.109 4.109 10 C 0.532 3.468 11 O -0.577 6.577 12 N -0.700 5.700 13 C 0.155 3.845 14 C 0.025 3.975 15 C -0.142 4.142 16 C -0.149 4.149 17 C -0.516 4.516 18 H 0.030 0.970 19 C 0.016 3.984 20 N -0.945 5.945 21 Si 0.944 3.056 22 H -0.282 1.282 23 H -0.316 1.316 24 H -0.204 1.204 25 C -0.070 4.070 26 C -0.141 4.141 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.414 0.586 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.264 0.736 44 H 0.145 0.855 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.833 17.908 0.659 33.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.054 4.054 3 C -0.158 4.158 4 C -0.086 4.086 5 C -0.192 4.192 6 C 0.311 3.689 7 O -0.354 6.354 8 C -0.169 4.169 9 C -0.130 4.130 10 C 0.320 3.680 11 O -0.459 6.459 12 N -0.351 5.351 13 C 0.031 3.969 14 C 0.024 3.976 15 C -0.200 4.200 16 C -0.205 4.205 17 C -0.554 4.554 18 H 0.048 0.952 19 C -0.181 4.181 20 N -0.584 5.584 21 Si 0.773 3.227 22 H -0.210 1.210 23 H -0.246 1.246 24 H -0.128 1.128 25 C -0.088 4.088 26 C -0.158 4.158 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.167 0.833 31 H 0.149 0.851 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.252 0.748 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.162 0.838 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -27.762 17.613 0.636 32.884 hybrid contribution 1.424 -0.063 0.219 1.442 sum -26.338 17.550 0.856 31.661 Atomic orbital electron populations 1.20965 0.88770 1.04265 1.03651 1.20641 0.97991 0.92848 0.93875 1.21320 0.93314 0.99185 1.01941 1.21500 0.94994 0.97430 0.94696 1.20325 0.93292 0.95568 1.09999 1.20850 0.89084 0.87840 0.71092 1.90590 1.71787 1.35069 1.37957 1.23889 0.95218 0.99851 0.97950 1.23514 0.95692 0.97509 0.96302 1.18962 0.82656 0.89635 0.76713 1.90762 1.68989 1.34548 1.51552 1.46011 1.05723 1.10825 1.72536 1.21126 0.91216 0.84339 1.00188 1.18685 0.91054 0.94253 0.93594 1.22236 1.01009 0.98805 0.97920 1.22311 0.99688 0.99836 0.98704 1.21005 0.91459 0.92026 1.50947 0.95201 1.25855 0.98580 0.99545 0.94135 1.70112 1.07950 1.30931 1.49401 0.86349 0.75778 0.82436 0.78133 1.20988 1.24562 1.12819 1.21732 0.95155 0.97422 0.94510 1.21387 0.93677 0.99151 1.01612 0.89655 0.90150 0.90163 0.83261 0.85079 0.82864 0.82266 0.74757 0.93302 0.93496 0.91559 0.93621 0.93911 0.93326 0.94704 0.90760 0.92705 0.83781 0.83146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.00 71.24 0.71 0.08 16 2 C -0.05 -0.59 5.89 -19.78 -0.12 -0.71 16 3 C -0.14 -1.73 9.68 22.23 0.22 -1.52 16 4 C -0.07 -1.14 9.60 22.55 0.22 -0.93 16 5 C -0.19 -3.56 5.88 -20.04 -0.12 -3.68 16 6 C 0.43 9.33 7.10 27.22 0.19 9.52 16 7 O -0.47 -12.40 16.25 -3.86 -0.06 -12.46 16 8 C -0.15 -3.19 9.07 23.82 0.22 -2.97 16 9 C -0.11 -2.50 9.60 23.86 0.23 -2.27 16 10 C 0.53 16.03 7.78 86.72 0.68 16.71 16 11 O -0.58 -21.75 16.25 -3.85 -0.06 -21.81 16 12 N -0.70 -20.84 5.00 -466.25 -2.33 -23.17 16 13 C 0.16 6.00 4.49 86.38 0.39 6.39 16 14 C 0.03 1.05 0.50 -52.93 -0.03 1.03 16 15 C -0.14 -5.31 7.53 71.98 0.54 -4.77 16 16 C -0.15 -5.47 7.52 71.98 0.54 -4.93 16 17 C -0.52 -28.14 8.62 25.60 0.22 -27.92 16 18 H 0.03 1.85 7.99 -2.92 -0.02 1.82 16 19 C 0.02 0.92 5.32 84.66 0.45 1.37 16 20 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 21 Si 0.94 42.57 22.79 68.60 1.56 44.13 16 22 H -0.28 -12.53 7.10 99.48 0.71 -11.82 16 23 H -0.32 -14.76 7.11 99.48 0.71 -14.06 16 24 H -0.20 -7.77 4.65 99.48 0.46 -7.31 16 25 C -0.07 -1.07 9.46 22.55 0.21 -0.86 16 26 C -0.14 -1.70 9.68 22.23 0.22 -1.48 16 27 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.08 0.31 8.08 -2.39 -0.02 0.29 16 29 H 0.08 0.29 8.08 -2.39 -0.02 0.27 16 30 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 31 H 0.13 2.18 7.65 -2.91 -0.02 2.16 16 32 H 0.15 3.09 5.82 -2.91 -0.02 3.07 16 33 H 0.16 3.02 7.53 -2.91 -0.02 2.99 16 34 H 0.41 9.82 6.24 -92.71 -0.58 9.24 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.07 1.90 7.13 -2.39 -0.02 1.88 16 38 H 0.04 1.81 4.30 -2.39 -0.01 1.80 16 39 H 0.04 1.62 8.12 -2.38 -0.02 1.60 16 40 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.03 1.34 2.25 -2.39 -0.01 1.34 16 42 H 0.07 2.08 6.86 -2.38 -0.02 2.06 16 43 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.14 1.87 6.23 -2.91 -0.02 1.85 16 45 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -72.50 364.12 4.37 -68.13 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.19 Total: 20.15 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.77 Total: -16.92 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.03 Total: -81.22 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.13 Total: -34.27 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.56 Total: 44.13 kcal Total: -72.50 4.37 -68.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909881471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.742 kcal (2) G-P(sol) polarization free energy of solvation -72.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds