Wall clock time and date at job start Tue Mar 31 2020 11:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 119.99790 * 2 1 4 4 C 1.38218 * 119.99796 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99786 * 359.75033 * 4 3 2 6 6 C 1.38211 * 119.99900 * 0.50742 * 5 4 3 7 7 C 1.50701 * 119.99639 * 179.76986 * 6 5 4 8 8 H 1.09002 * 109.47174 * 159.72642 * 7 6 5 9 9 O 1.42901 * 109.47365 * 39.71889 * 7 6 5 10 10 C 1.52999 * 109.46765 * 279.72212 * 7 6 5 11 11 N 1.46908 * 109.47085 * 185.00253 * 10 7 6 12 12 C 1.46896 * 110.99797 * 190.00132 * 11 10 7 13 13 C 1.50697 * 109.47323 * 75.77483 * 12 11 10 14 14 H 1.07996 * 120.00129 * 5.05505 * 13 12 11 15 15 C 1.37878 * 119.99879 * 185.06029 * 13 12 11 16 16 N 1.31513 * 120.00250 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47064 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47243 * 119.99922 * 17 15 13 20 20 H 1.48508 * 109.46916 * 239.99959 * 17 15 13 21 21 C 1.46893 * 110.99879 * 66.04415 * 11 10 7 22 22 C 1.50706 * 109.47294 * 195.91232 * 21 11 10 23 23 C 1.34506 * 125.78951 * 89.99903 * 22 21 11 24 24 C 1.41382 * 106.83928 * 180.02562 * 23 22 21 25 25 C 1.34513 * 106.84337 * 0.02562 * 24 23 22 26 26 O 1.34306 * 108.41846 * 359.73538 * 25 24 23 27 27 C 1.38211 * 120.00075 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46937 * 270.02106 * 1 2 3 29 29 H 1.08996 * 109.47246 * 30.02248 * 1 2 3 30 30 H 1.09003 * 109.46852 * 150.02103 * 1 2 3 31 31 H 1.07992 * 120.00358 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.99749 * 180.02562 * 4 3 2 33 33 H 1.08001 * 119.99826 * 180.27226 * 5 4 3 34 34 H 0.96693 * 114.00049 * 300.00503 * 9 7 6 35 35 H 1.08999 * 109.47575 * 304.99943 * 10 7 6 36 36 H 1.09001 * 109.47277 * 65.00192 * 10 7 6 37 37 H 1.09000 * 109.46794 * 195.77348 * 12 11 10 38 38 H 1.08998 * 109.47694 * 315.76802 * 12 11 10 39 39 H 0.97003 * 120.00093 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47561 * 315.90920 * 21 11 10 41 41 H 1.09001 * 109.47377 * 75.91321 * 21 11 10 42 42 H 1.07997 * 126.58125 * 359.96509 * 23 22 21 43 43 H 1.08004 * 126.57930 * 179.97438 * 24 23 22 44 44 H 1.07996 * 125.79069 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.00003 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5806 -1.1969 0.0009 7 6 4.3341 -2.5020 0.0019 8 1 3.6794 -3.2994 0.3536 9 8 5.4658 -2.3980 0.8682 10 6 4.8066 -2.8191 -1.4183 11 7 5.4359 -4.1464 -1.4401 12 6 6.1103 -4.3882 -2.7225 13 6 7.4021 -3.6134 -2.7647 14 1 7.7335 -3.0680 -1.8935 15 6 8.1611 -3.6007 -3.9158 16 7 7.7579 -4.2651 -4.9767 17 14 9.7621 -2.6397 -3.9684 18 1 9.9889 -1.9836 -2.6556 19 1 10.8858 -3.5655 -4.2603 20 1 9.6839 -1.6054 -5.0312 21 6 4.4527 -5.1999 -1.1554 22 6 5.1720 -6.4759 -0.8008 23 6 5.5422 -6.8526 0.4362 24 6 6.1832 -8.1062 0.3080 25 6 6.1669 -8.4203 -0.9998 26 8 5.5484 -7.4318 -1.6660 27 6 2.1980 -1.1969 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6583 2.1327 0.0004 32 1 4.1204 2.1328 0.0010 33 1 5.3517 0.0000 0.0112 34 1 6.0927 -1.7067 0.6151 35 1 3.9527 -2.8109 -2.0957 36 1 5.5301 -2.0686 -1.7367 37 1 6.3214 -5.4524 -2.8270 38 1 5.4653 -4.0639 -3.5391 39 1 8.2916 -4.2559 -5.7866 40 1 3.8234 -4.8935 -0.3198 41 1 3.8321 -5.3654 -2.0361 42 1 5.3815 -6.3025 1.3516 43 1 6.6057 -8.6977 1.1068 44 1 6.5772 -9.3177 -1.4389 45 1 1.6580 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929775181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:48 Heat of formation + Delta-G solvation = -27.795310 kcal Electronic energy + Delta-G solvation = -26153.416211 eV Core-core repulsion = 22522.602675 eV Total energy + Delta-G solvation = -3630.813537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.36133 -40.76110 -38.92386 -37.09319 -34.75660 -33.80484 -33.56621 -32.61640 -31.56332 -29.85019 -28.17814 -27.68190 -26.16383 -24.62136 -23.05576 -22.65928 -22.35110 -21.32936 -21.01157 -18.62055 -18.27258 -18.11294 -17.23219 -16.98440 -16.70602 -16.64818 -16.02450 -15.85541 -15.52861 -15.18421 -15.02661 -14.61942 -14.40473 -14.25925 -13.94703 -13.75155 -13.59228 -13.40920 -13.22204 -13.15864 -13.04355 -12.96656 -12.68375 -12.63532 -12.52532 -12.29552 -12.06091 -12.00293 -11.75535 -11.29291 -10.90160 -10.71971 -10.58822 -9.70307 -9.48920 -9.32568 -9.05085 -8.18995 -6.29113 0.40749 0.49164 0.90226 1.38780 1.40109 1.53357 1.81948 2.26146 2.39768 2.78800 3.13144 3.23052 3.60668 3.81674 3.87190 3.90180 4.03782 4.09801 4.19068 4.24706 4.26507 4.28522 4.39997 4.49081 4.53343 4.58769 4.69698 4.83483 4.86184 4.92391 4.99490 5.01888 5.09980 5.15137 5.16821 5.23905 5.30444 5.32383 5.57196 5.65080 5.67555 5.70204 5.75468 6.05311 6.13119 6.25309 6.38366 6.50329 6.82715 6.87205 7.40050 8.91637 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.004532 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.711843 B = 6177.049459 C = 8289.555951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.120 4.120 5 C -0.131 4.131 6 C -0.119 4.119 7 C 0.165 3.835 8 H 0.108 0.892 9 O -0.554 6.554 10 C 0.046 3.954 11 N -0.524 5.524 12 C 0.208 3.792 13 C -0.514 4.514 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.260 1.260 19 H -0.282 1.282 20 H -0.278 1.278 21 C 0.128 3.872 22 C -0.016 4.016 23 C -0.202 4.202 24 C -0.220 4.220 25 C -0.057 4.057 26 O -0.204 6.204 27 C -0.125 4.125 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.379 0.621 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.003 0.997 38 H -0.036 1.036 39 H 0.263 0.737 40 H 0.122 0.878 41 H 0.033 0.967 42 H 0.158 0.842 43 H 0.174 0.826 44 H 0.229 0.771 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.285 5.347 12.244 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.138 4.138 5 C -0.149 4.149 6 C -0.120 4.120 7 C 0.105 3.895 8 H 0.125 0.875 9 O -0.360 6.360 10 C -0.082 4.082 11 N -0.248 5.248 12 C 0.082 3.918 13 C -0.552 4.552 14 H 0.081 0.919 15 C -0.196 4.196 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.184 1.184 19 H -0.208 1.208 20 H -0.203 1.203 21 C 0.000 4.000 22 C -0.066 4.066 23 C -0.222 4.222 24 C -0.239 4.239 25 C -0.124 4.124 26 O -0.101 6.101 27 C -0.143 4.143 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.143 0.857 34 H 0.228 0.772 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.021 0.979 38 H -0.018 1.018 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.051 0.949 42 H 0.175 0.825 43 H 0.191 0.809 44 H 0.245 0.755 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.243 4.827 12.428 18.101 hybrid contribution 0.829 0.507 -1.498 1.786 sum -11.414 5.334 10.930 16.679 Atomic orbital electron populations 1.20829 0.89276 1.03574 1.03155 1.20245 0.97547 0.92793 0.98834 1.21374 0.94298 0.98395 1.00637 1.21390 0.94866 0.98203 0.99311 1.21113 1.00492 0.92444 1.00820 1.20573 0.94919 0.95599 1.00921 1.20726 0.86667 0.93652 0.88449 0.87461 1.86544 1.35109 1.60877 1.53501 1.22652 0.97377 0.91515 0.96672 1.61998 1.27500 1.00713 1.34582 1.19425 0.93040 0.95425 0.83894 1.21437 1.05750 1.30084 0.97946 0.91880 1.25896 1.01808 0.96833 0.95096 1.70110 1.40281 1.43762 1.03496 0.85381 0.78780 0.78275 0.78489 1.18433 1.20765 1.20338 1.20633 0.92156 0.85901 1.01292 1.22496 1.03969 0.91661 0.88504 1.21737 1.04599 0.98152 0.97712 1.22123 1.06076 0.98244 0.97433 1.24716 1.01125 0.94204 0.92364 1.84055 1.59226 1.27329 1.39459 1.21088 0.93039 0.98870 1.01297 0.90130 0.90403 0.91166 0.83886 0.84101 0.85712 0.77164 0.95229 0.91161 0.97857 1.01816 0.92855 0.86043 0.94888 0.82474 0.80871 0.75484 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.01 71.23 0.71 -0.86 16 2 C -0.09 -1.91 5.88 -19.87 -0.12 -2.03 16 3 C -0.13 -2.52 9.70 22.27 0.22 -2.30 16 4 C -0.12 -2.55 10.05 22.27 0.22 -2.33 16 5 C -0.13 -3.26 9.32 22.27 0.21 -3.06 16 6 C -0.12 -3.17 4.97 -19.87 -0.10 -3.27 16 7 C 0.16 4.91 3.19 29.85 0.10 5.01 16 8 H 0.11 2.99 5.96 -2.39 -0.01 2.97 16 9 O -0.55 -17.70 13.13 -148.98 -1.96 -19.65 16 10 C 0.05 1.72 4.40 86.30 0.38 2.09 16 11 N -0.52 -22.77 4.32 -905.37 -3.91 -26.68 16 12 C 0.21 11.41 4.59 85.56 0.39 11.80 16 13 C -0.51 -29.60 8.56 25.60 0.22 -29.38 16 14 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 15 C 0.00 0.08 5.46 84.66 0.46 0.54 16 16 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 17 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 C 0.13 4.79 5.37 85.56 0.46 5.25 16 22 C -0.02 -0.64 6.12 24.83 0.15 -0.48 16 23 C -0.20 -6.94 10.81 22.19 0.24 -6.70 16 24 C -0.22 -6.68 10.91 22.19 0.24 -6.44 16 25 C -0.06 -1.84 12.09 66.97 0.81 -1.03 16 26 O -0.20 -8.45 9.80 -2.54 -0.02 -8.47 16 27 C -0.12 -2.93 9.33 22.27 0.21 -2.73 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 31 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.12 2.92 6.78 -2.91 -0.02 2.90 16 34 H 0.38 10.61 7.50 -74.06 -0.56 10.06 16 35 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 36 H 0.07 2.90 7.44 -2.39 -0.02 2.88 16 37 H 0.00 0.20 6.46 -2.39 -0.02 0.19 16 38 H -0.04 -2.15 8.00 -2.39 -0.02 -2.16 16 39 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.12 3.67 5.87 -2.39 -0.01 3.66 16 41 H 0.03 1.27 8.05 -2.39 -0.02 1.25 16 42 H 0.16 4.79 8.06 -2.91 -0.02 4.77 16 43 H 0.17 3.97 8.06 -2.91 -0.02 3.95 16 44 H 0.23 5.28 8.06 -2.91 -0.02 5.26 16 45 H 0.13 2.67 8.04 -2.91 -0.02 2.64 16 Total: -1.00 -73.10 375.08 1.66 -71.45 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.43 Total: 29.57 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 4.80 Total: -35.91 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -3.62 Total: -83.95 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -1.98 Total: -28.12 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.10 1.66 -71.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.651 kcal (2) G-P(sol) polarization free energy of solvation -73.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds