Wall clock time and date at job start Tue Mar 31 2020 11:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36664 * 120.14165 * 2 1 4 4 C 1.38788 * 120.44402 * 179.97438 * 3 2 1 5 5 C 1.37839 * 120.74340 * 0.04066 * 4 3 2 6 6 C 1.38987 * 119.85419 * 359.95342 * 5 4 3 7 7 O 1.34717 * 133.24611 * 180.33750 * 6 5 4 8 8 C 1.34952 * 110.86606 * 180.08839 * 7 6 5 9 9 C 1.46974 * 125.13198 * 179.87555 * 8 7 6 10 10 O 1.21650 * 120.00285 * 185.69071 * 9 8 7 11 11 N 1.34777 * 119.99730 * 5.68922 * 9 8 7 12 12 C 1.46504 * 120.00183 * 355.89161 * 11 9 8 13 13 C 1.50695 * 109.46776 * 276.54877 * 12 11 9 14 14 H 1.08004 * 120.00391 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00057 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00179 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99773 * 359.97438 * 15 13 12 18 18 H 1.48493 * 109.47512 * 89.99973 * 17 15 13 19 19 H 1.48497 * 109.47151 * 210.00274 * 17 15 13 20 20 H 1.48505 * 109.47152 * 329.99670 * 17 15 13 21 21 C 1.46506 * 120.00161 * 175.88601 * 11 9 8 22 22 C 1.52998 * 109.46927 * 264.51872 * 21 11 9 23 23 C 1.53006 * 109.47218 * 65.57028 * 22 21 11 24 24 C 1.52998 * 109.46784 * 185.56172 * 22 21 11 25 25 C 1.35809 * 109.74279 * 359.61966 * 8 7 6 26 26 C 1.39663 * 120.14566 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47509 * 269.97925 * 1 2 3 28 28 H 1.08994 * 109.47206 * 29.98445 * 1 2 3 29 29 H 1.09001 * 109.46802 * 149.98261 * 1 2 3 30 30 H 1.07997 * 119.77645 * 0.02562 * 3 2 1 31 31 H 1.08003 * 119.63174 * 180.02562 * 4 3 2 32 32 H 1.08003 * 120.07353 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.46840 * 36.54369 * 12 11 9 34 34 H 1.08997 * 109.47086 * 156.54591 * 12 11 9 35 35 H 0.97000 * 119.99935 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.46639 * 24.51440 * 21 11 9 37 37 H 1.08992 * 109.46941 * 144.51660 * 21 11 9 38 38 H 1.08995 * 109.47784 * 305.56520 * 22 21 11 39 39 H 1.09003 * 109.46825 * 304.81204 * 23 22 21 40 40 H 1.08995 * 109.47109 * 64.81597 * 23 22 21 41 41 H 1.09003 * 109.47231 * 184.81940 * 23 22 21 42 42 H 1.09009 * 109.47143 * 60.00475 * 24 22 21 43 43 H 1.09003 * 109.47313 * 180.02562 * 24 22 21 44 44 H 1.08997 * 109.47649 * 300.00032 * 24 22 21 45 45 H 1.07995 * 126.95887 * 180.19240 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5811 1.1892 0.0005 5 6 4.2920 0.0082 0.0002 6 6 3.6161 -1.2062 0.0004 7 8 4.0246 -2.4899 0.0059 8 6 2.9688 -3.3304 0.0012 9 6 3.0556 -4.7975 0.0026 10 8 2.0456 -5.4668 -0.1064 11 7 4.2543 -5.4015 0.1246 12 6 5.4787 -4.5980 0.1653 13 6 5.9114 -4.2704 -1.2405 14 1 5.3326 -4.6256 -2.0803 15 6 7.0469 -3.5181 -1.4547 16 7 7.4248 -3.2327 -2.6815 17 14 8.0483 -2.9044 -0.0022 18 1 9.0821 -3.9115 0.3473 19 1 8.7072 -1.6229 -0.3613 20 1 7.1518 -2.6907 1.1623 21 6 4.3330 -6.8615 0.2167 22 6 4.3947 -7.2771 1.6878 23 6 3.0787 -6.9108 2.3770 24 6 4.6162 -8.7881 1.7820 25 6 1.8137 -2.6160 0.0008 26 6 2.2084 -1.2077 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8899 -0.5141 30 1 1.6520 2.1164 0.0004 31 1 4.1102 2.1308 0.0009 32 1 5.3719 0.0266 0.0002 33 1 5.2888 -3.6741 0.7116 34 1 6.2662 -5.1610 0.6661 35 1 8.2234 -2.7031 -2.8322 36 1 3.4518 -7.3029 -0.2489 37 1 5.2287 -7.2102 -0.2973 38 1 5.2183 -6.7580 2.1779 39 1 2.8782 -5.8486 2.2361 40 1 2.2667 -7.4945 1.9433 41 1 3.1537 -7.1281 3.4425 42 1 5.5538 -9.0492 1.2911 43 1 4.6597 -9.0843 2.8301 44 1 3.7926 -9.3073 1.2920 45 1 0.8076 -3.0084 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930901230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:40 Heat of formation + Delta-G solvation = -12.053938 kcal Electronic energy + Delta-G solvation = -27130.041844 eV Core-core repulsion = 23499.910905 eV Total energy + Delta-G solvation = -3630.130940 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07584 -39.35332 -37.81432 -36.20097 -34.22319 -33.07819 -32.32412 -31.23469 -29.57965 -28.18515 -26.99170 -26.85653 -25.94119 -23.22042 -22.52281 -22.21309 -20.40087 -20.04833 -19.05204 -17.33343 -17.10239 -16.70786 -15.86215 -15.82059 -15.59249 -14.73549 -14.65046 -14.33384 -14.05479 -13.78102 -13.51441 -13.48375 -13.01376 -12.85899 -12.84475 -12.70051 -12.28117 -12.20816 -12.02308 -11.88394 -11.61120 -11.50858 -11.41369 -11.14526 -10.97885 -10.73213 -10.70226 -10.55675 -10.36904 -10.17245 -9.76934 -9.73146 -9.55428 -8.67763 -8.32194 -8.01031 -7.69313 -6.16975 -4.16707 0.92159 1.62547 2.22068 2.99717 3.17532 3.26733 3.28168 3.68348 3.70112 3.90116 4.29945 4.68542 4.83473 4.97677 5.10044 5.14547 5.16498 5.28541 5.30025 5.35731 5.45235 5.50768 5.60006 5.64752 5.76538 5.83348 5.87472 5.87881 5.88585 6.05427 6.13346 6.14259 6.19733 6.26156 6.35424 6.37682 6.50940 6.51404 6.60412 6.62967 6.68896 6.82678 6.87153 7.20744 7.45991 7.52009 7.94620 8.37286 8.62310 8.87310 9.42165 10.96092 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.006068 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.496709 B = 4613.575620 C = 6594.660268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.036 4.036 3 C -0.148 4.148 4 C -0.090 4.090 5 C -0.110 4.110 6 C 0.069 3.931 7 O -0.135 6.135 8 C 0.007 3.993 9 C 0.596 3.404 10 O -0.543 6.543 11 N -0.574 5.574 12 C 0.201 3.799 13 C -0.529 4.529 14 H 0.076 0.924 15 C 0.081 3.919 16 N -0.892 5.892 17 Si 0.863 3.137 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.120 3.880 22 C -0.114 4.114 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.141 4.141 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.050 0.950 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 3.003 9.097 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.036 4.036 3 C -0.167 4.167 4 C -0.109 4.109 5 C -0.128 4.128 6 C 0.020 3.980 7 O -0.035 6.035 8 C -0.043 4.043 9 C 0.384 3.616 10 O -0.424 6.424 11 N -0.302 5.302 12 C 0.081 3.919 13 C -0.567 4.567 14 H 0.094 0.906 15 C -0.122 4.122 16 N -0.530 5.530 17 Si 0.689 3.311 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.186 1.186 21 C -0.003 4.003 22 C -0.134 4.134 23 C -0.196 4.196 24 C -0.199 4.199 25 C -0.165 4.165 26 C -0.142 4.142 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.626 2.632 8.927 12.690 hybrid contribution 0.847 0.548 0.475 1.115 sum -7.779 3.180 9.403 12.611 Atomic orbital electron populations 1.20768 0.91048 1.02853 1.02296 1.19062 0.95767 0.90854 0.97907 1.20545 0.94100 0.97138 1.04867 1.20859 0.93947 0.96866 0.99191 1.20015 1.00428 0.87948 1.04449 1.19970 0.92568 0.85325 1.00177 1.84742 1.32225 1.12863 1.73634 1.22048 0.85581 0.91223 1.05491 1.16709 0.83989 0.83567 0.77377 1.90778 1.35543 1.63200 1.52912 1.47869 1.06924 1.07077 1.68349 1.20127 0.81748 0.90890 0.99167 1.21227 1.10593 1.33975 0.90924 0.90585 1.24759 0.96876 0.95221 0.95340 1.69884 1.24913 1.38529 1.19630 0.87044 0.81060 0.79167 0.83805 1.19963 1.20776 1.18634 1.21540 1.03465 0.79807 0.95482 1.21530 0.98698 0.96341 0.96792 1.21770 0.96921 1.01857 0.99050 1.21748 1.01719 0.95035 1.01431 1.22472 0.98630 0.90109 1.05276 1.19742 0.93065 0.93383 1.08033 0.91084 0.91468 0.91318 0.85756 0.85102 0.85088 0.93233 0.94884 0.92486 0.89916 0.89964 0.91055 0.92919 0.92468 0.93537 0.92494 0.92796 0.92592 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.96 36.01 0.36 -0.87 16 2 C -0.04 -0.51 5.88 -104.66 -0.62 -1.13 16 3 C -0.15 -1.91 9.63 -39.95 -0.38 -2.30 16 4 C -0.09 -1.23 10.01 -39.52 -0.40 -1.63 16 5 C -0.11 -1.87 10.07 -39.45 -0.40 -2.27 16 6 C 0.07 1.35 7.41 -38.35 -0.28 1.07 16 7 O -0.14 -3.00 6.42 2.75 0.02 -2.98 16 8 C 0.01 0.16 6.72 -36.91 -0.25 -0.09 16 9 C 0.60 12.69 6.09 -12.72 -0.08 12.61 16 10 O -0.54 -11.75 15.51 5.23 0.08 -11.67 16 11 N -0.57 -11.94 2.28 -176.50 -0.40 -12.34 16 12 C 0.20 4.60 3.86 -5.19 -0.02 4.58 16 13 C -0.53 -14.29 8.99 -34.44 -0.31 -14.60 16 14 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 15 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 16 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 17 Si 0.86 20.24 27.47 -169.99 -4.67 15.57 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 21 C 0.12 2.10 4.93 -4.04 -0.02 2.08 16 22 C -0.11 -1.67 3.12 -90.62 -0.28 -1.96 16 23 C -0.14 -2.04 8.52 37.16 0.32 -1.72 16 24 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 25 C -0.14 -2.62 10.52 -37.23 -0.39 -3.01 16 26 C -0.14 -2.49 6.15 -105.19 -0.65 -3.14 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 32 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 33 H 0.05 1.17 4.39 -51.93 -0.23 0.94 16 34 H 0.03 0.72 7.45 -51.93 -0.39 0.34 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.46 7.21 -51.93 -0.37 1.08 16 37 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.89 6.18 -51.93 -0.32 0.56 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.16 2.57 8.06 -52.49 -0.42 2.14 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -30.94 367.83 -8.61 -39.55 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.80 Total: 3.47 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.15 Total: -11.56 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.37 Total: -37.93 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.10 Total: -14.65 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.94 -8.61 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930901230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.495 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds