Wall clock time and date at job start Tue Mar 31 2020 11:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36660 * 120.14424 * 2 1 4 4 C 1.38792 * 120.44115 * 179.97438 * 3 2 1 5 5 C 1.37839 * 120.74800 * 0.02562 * 4 3 2 6 6 C 1.38985 * 119.85437 * 0.25384 * 5 4 3 7 7 O 1.34715 * 133.25131 * 180.47945 * 6 5 4 8 8 C 1.34948 * 110.86745 * 179.51878 * 7 6 5 9 9 C 1.46975 * 125.12799 * 179.73215 * 8 7 6 10 10 O 1.21656 * 120.00234 * 179.97438 * 9 8 7 11 11 N 1.34782 * 119.99746 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99600 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46998 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.46960 * 299.99756 * 13 12 11 15 15 C 1.52997 * 109.46917 * 59.99698 * 13 12 11 16 16 C 1.52995 * 109.46940 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.46774 * 180.02562 * 16 13 12 18 18 H 1.08001 * 120.00137 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99884 * 180.02562 * 17 16 13 20 20 N 1.31512 * 119.99822 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99936 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46849 * 90.00604 * 21 19 17 23 23 H 1.48502 * 109.46742 * 210.00054 * 21 19 17 24 24 H 1.48493 * 109.47035 * 330.00188 * 21 19 17 25 25 C 1.35802 * 109.74541 * 359.71333 * 8 7 6 26 26 C 1.39670 * 120.14625 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.46797 * 90.00068 * 1 2 3 28 28 H 1.09001 * 109.47025 * 210.00131 * 1 2 3 29 29 H 1.08993 * 109.47353 * 329.99964 * 1 2 3 30 30 H 1.07993 * 119.77846 * 0.02562 * 3 2 1 31 31 H 1.08009 * 119.62695 * 179.97438 * 4 3 2 32 32 H 1.08002 * 120.07108 * 179.97438 * 5 4 3 33 33 H 0.97001 * 120.00187 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.46818 * 299.99516 * 12 11 9 35 35 H 1.08994 * 109.47545 * 59.99270 * 12 11 9 36 36 H 1.09005 * 109.46999 * 59.99770 * 14 13 12 37 37 H 1.08999 * 109.46977 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.46983 * 300.00078 * 14 13 12 39 39 H 1.09004 * 109.47445 * 60.00051 * 15 13 12 40 40 H 1.08999 * 109.47140 * 180.02562 * 15 13 12 41 41 H 1.09004 * 109.47411 * 299.99813 * 15 13 12 42 42 H 1.09004 * 109.47076 * 299.99737 * 16 13 12 43 43 H 1.08997 * 109.47304 * 60.00289 * 16 13 12 44 44 H 0.97002 * 119.99694 * 180.02562 * 20 19 17 45 45 H 1.07995 * 126.96273 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5812 1.1890 0.0005 5 6 4.2921 0.0080 0.0005 6 6 3.6161 -1.2064 -0.0053 7 8 4.0245 -2.4901 0.0014 8 6 2.9686 -3.3304 0.0011 9 6 3.0553 -4.7976 0.0019 10 8 2.0395 -5.4671 0.0020 11 7 4.2604 -5.4014 0.0023 12 6 4.3468 -6.8639 0.0024 13 6 5.8170 -7.2878 0.0023 14 6 6.5067 -6.7363 -1.2471 15 6 6.5070 -6.7359 1.2514 16 6 5.9073 -8.8151 0.0031 17 6 7.3553 -9.2326 0.0036 18 1 8.1333 -8.4836 0.0030 19 6 7.6869 -10.5710 0.0038 20 7 8.9505 -10.9353 0.0038 21 14 6.3411 -11.8666 0.0042 22 1 5.9846 -12.2102 -1.3958 23 1 6.8257 -13.0832 0.7045 24 1 5.1437 -11.3363 0.7042 25 6 1.8137 -2.6160 0.0006 26 6 2.2085 -1.2078 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.6521 2.1163 0.0004 31 1 4.1103 2.1306 0.0001 32 1 5.3719 0.0264 0.0005 33 1 5.0703 -4.8676 0.0018 34 1 3.8551 -7.2568 0.8924 35 1 3.8556 -7.2570 -0.8875 36 1 6.4422 -5.6482 -1.2472 37 1 7.5541 -7.0379 -1.2470 38 1 6.0150 -7.1295 -2.1369 39 1 6.0156 -7.1288 2.1415 40 1 7.5544 -7.0375 1.2511 41 1 6.4426 -5.6478 1.2512 42 1 5.4160 -9.2077 0.8935 43 1 5.4156 -9.2086 -0.8865 44 1 9.1837 -11.8769 0.0035 45 1 0.8074 -3.0082 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935992513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:35 Heat of formation + Delta-G solvation = -44.883927 kcal Electronic energy + Delta-G solvation = -25455.054623 eV Core-core repulsion = 21823.500068 eV Total energy + Delta-G solvation = -3631.554555 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.59880 -40.91931 -39.14097 -38.75428 -35.35423 -34.37519 -34.07125 -32.62402 -31.05069 -29.73675 -28.18985 -28.03360 -27.48721 -25.21718 -23.84860 -23.71967 -21.83454 -21.63311 -20.19196 -19.06603 -18.87526 -18.20726 -17.57073 -17.15242 -16.92695 -16.31411 -16.24358 -15.90638 -15.34977 -15.20738 -15.05664 -14.71309 -14.48489 -14.25952 -14.23724 -14.21437 -14.05621 -13.93101 -13.22056 -12.96238 -12.86156 -12.68744 -12.64666 -12.56180 -12.32506 -12.19730 -11.94299 -11.82105 -11.65601 -11.54631 -11.23752 -11.18422 -10.93942 -10.70555 -10.29244 -9.66878 -9.17408 -8.22289 -6.22685 -0.52702 0.32038 0.75471 1.33673 1.36661 1.39266 1.49308 1.96847 2.03208 2.39327 2.65917 3.13127 3.31950 3.53337 3.82469 3.85016 3.97181 4.00934 4.11203 4.12622 4.16878 4.38127 4.50524 4.59183 4.65731 4.70447 4.72129 4.75766 4.80550 4.89948 4.95625 4.97735 5.06065 5.18396 5.23057 5.24614 5.27554 5.36605 5.38357 5.38913 5.51396 5.52578 5.57837 5.65010 5.74857 5.99384 6.32676 6.37869 6.83998 6.86936 7.39913 8.93320 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.002472 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.787074 B =11324.305699 C =12040.432609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.035 4.035 3 C -0.142 4.142 4 C -0.067 4.067 5 C -0.132 4.132 6 C 0.050 3.950 7 O -0.194 6.194 8 C -0.046 4.046 9 C 0.597 3.403 10 O -0.552 6.552 11 N -0.698 5.698 12 C 0.134 3.866 13 C -0.058 4.058 14 C -0.126 4.126 15 C -0.126 4.126 16 C -0.003 4.003 17 C -0.502 4.502 18 H 0.051 0.949 19 C 0.004 3.996 20 N -0.952 5.952 21 Si 0.936 3.064 22 H -0.272 1.272 23 H -0.290 1.290 24 H -0.249 1.249 25 C -0.106 4.106 26 C -0.166 4.166 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.162 0.838 31 H 0.172 0.828 32 H 0.150 0.850 33 H 0.414 0.586 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.018 0.982 43 H 0.017 0.983 44 H 0.262 0.738 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.708 28.392 -0.023 32.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.035 4.035 3 C -0.160 4.160 4 C -0.084 4.084 5 C -0.150 4.150 6 C 0.003 3.997 7 O -0.096 6.096 8 C -0.095 4.095 9 C 0.383 3.617 10 O -0.433 6.433 11 N -0.348 5.348 12 C 0.011 3.989 13 C -0.058 4.058 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.041 4.041 17 C -0.540 4.540 18 H 0.069 0.931 19 C -0.192 4.192 20 N -0.593 5.593 21 Si 0.761 3.239 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.173 1.173 25 C -0.127 4.127 26 C -0.167 4.167 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.180 0.820 31 H 0.190 0.810 32 H 0.167 0.833 33 H 0.252 0.748 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -16.010 27.643 -0.016 31.944 hybrid contribution 0.415 -1.260 -0.032 1.327 sum -15.594 26.383 -0.047 30.647 Atomic orbital electron populations 1.20899 0.88996 1.04059 1.03539 1.19560 0.97546 0.90353 0.96082 1.21143 0.94556 0.98139 1.02118 1.21481 0.94246 0.97738 0.94960 1.20385 1.01540 0.87181 1.05943 1.20272 0.93517 0.83917 1.02034 1.83978 1.34039 1.14804 1.76779 1.21742 0.86409 0.90099 1.11261 1.16816 0.84115 0.83837 0.76951 1.90855 1.36021 1.63802 1.52578 1.45962 1.07947 1.08465 1.72438 1.21504 0.97026 0.78239 1.02112 1.20561 0.92242 0.96284 0.96733 1.21724 1.00736 0.99515 0.96334 1.21721 1.00736 0.99503 0.96333 1.19566 0.95610 0.92425 0.96488 1.21356 0.92235 0.92084 1.48360 0.93104 1.25856 0.97159 1.01139 0.95050 1.70045 1.18605 1.17050 1.53629 0.85874 0.80573 0.78642 0.78856 1.19695 1.21573 1.17298 1.22914 0.99084 0.90880 0.99806 1.19973 0.93273 0.93781 1.09705 0.89831 0.91655 0.88953 0.82000 0.81017 0.83265 0.74812 0.91483 0.91424 0.91964 0.93369 0.93259 0.93297 0.93360 0.91963 0.96322 0.96467 0.92871 0.80593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.96 71.24 0.71 -0.49 16 2 C -0.04 -0.53 5.88 -19.89 -0.12 -0.65 16 3 C -0.14 -1.51 9.63 22.03 0.21 -1.30 16 4 C -0.07 -0.69 10.01 22.31 0.22 -0.47 16 5 C -0.13 -2.07 10.07 22.35 0.23 -1.85 16 6 C 0.05 1.12 7.41 23.07 0.17 1.29 16 7 O -0.19 -4.93 10.28 -13.00 -0.13 -5.07 16 8 C -0.05 -1.22 7.07 24.00 0.17 -1.05 16 9 C 0.60 18.03 7.79 86.53 0.67 18.71 16 10 O -0.55 -19.68 16.83 -4.21 -0.07 -19.75 16 11 N -0.70 -19.80 4.95 -466.78 -2.31 -22.11 16 12 C 0.13 4.31 4.56 86.38 0.39 4.71 16 13 C -0.06 -2.07 0.54 -52.18 -0.03 -2.10 16 14 C -0.13 -4.32 8.05 71.98 0.58 -3.74 16 15 C -0.13 -4.32 8.05 71.98 0.58 -3.74 16 16 C 0.00 -0.14 3.11 29.85 0.09 -0.04 16 17 C -0.50 -27.28 8.21 25.60 0.21 -27.07 16 18 H 0.05 2.99 5.92 -2.91 -0.02 2.97 16 19 C 0.00 0.24 5.47 84.66 0.46 0.70 16 20 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 21 Si 0.94 44.29 27.47 68.60 1.88 46.17 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 25 C -0.11 -2.51 10.52 23.79 0.25 -2.26 16 26 C -0.17 -3.53 6.15 -20.23 -0.12 -3.65 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.74 7.91 -2.39 -0.02 0.72 16 29 H 0.09 0.54 8.08 -2.39 -0.02 0.52 16 30 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 31 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 32 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.41 10.45 5.88 -92.71 -0.54 9.91 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 1.74 6.86 -2.38 -0.02 1.72 16 37 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.91 6.62 -2.39 -0.02 1.90 16 41 H 0.06 1.74 6.86 -2.38 -0.02 1.72 16 42 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 43 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 44 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.18 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -69.76 367.46 4.75 -65.01 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.40 Total: 17.31 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.68 Total: -23.01 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.01 Total: -80.68 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.20 Total: -24.82 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -69.76 4.75 -65.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935992513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.126 kcal (2) G-P(sol) polarization free energy of solvation -69.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds