Wall clock time and date at job start Tue Mar 31 2020 12:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35935 * 117.00151 * 2 1 4 4 C 1.39425 * 119.82335 * 0.02562 * 3 2 1 5 5 C 1.38073 * 120.57440 * 180.02562 * 4 3 2 6 6 C 1.38726 * 120.20519 * 0.02562 * 5 4 3 7 7 N 1.38914 * 120.17941 * 179.97438 * 6 5 4 8 8 C 1.36354 * 119.99904 * 352.81718 * 7 6 5 9 9 C 1.35091 * 119.42035 * 118.66183 * 8 7 6 10 10 C 1.39886 * 121.67829 * 179.75349 * 9 8 7 11 11 O 1.21534 * 119.70472 * 179.82294 * 10 9 8 12 12 C 1.50683 * 120.58946 * 0.11249 * 10 9 8 13 13 C 1.53459 * 108.96076 * 330.75522 * 12 10 9 14 14 C 1.52996 * 109.75881 * 297.24151 * 13 12 10 15 15 C 1.52996 * 109.53193 * 176.77777 * 13 12 10 16 16 C 1.50540 * 119.41913 * 298.68073 * 8 7 6 17 17 C 1.41542 * 119.63764 * 0.25652 * 6 5 4 18 18 C 1.41006 * 120.27535 * 179.70110 * 17 6 5 19 19 H 1.08001 * 119.99610 * 27.18910 * 18 17 6 20 20 C 1.39940 * 119.99906 * 207.18720 * 18 17 6 21 21 N 1.30858 * 119.99956 * 12.83511 * 20 18 17 22 22 Si 1.86795 * 119.99906 * 192.82815 * 20 18 17 23 23 H 1.48503 * 109.47165 * 90.00086 * 22 20 18 24 24 H 1.48498 * 109.47496 * 210.00275 * 22 20 18 25 25 H 1.48507 * 109.47296 * 330.00372 * 22 20 18 26 26 C 1.37860 * 119.82593 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46961 * 299.99550 * 1 2 3 29 29 H 1.09000 * 109.47284 * 59.99573 * 1 2 3 30 30 H 1.08002 * 119.71213 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.89928 * 179.97438 * 5 4 3 32 32 H 0.96998 * 119.99522 * 172.81659 * 7 6 5 33 33 H 1.07995 * 119.15815 * 359.78792 * 9 8 7 34 34 H 1.09001 * 109.53701 * 90.76656 * 12 10 9 35 35 H 1.09000 * 109.53419 * 210.99467 * 12 10 9 36 36 H 1.08997 * 109.47702 * 179.30637 * 14 13 12 37 37 H 1.08996 * 109.47261 * 299.31062 * 14 13 12 38 38 H 1.09006 * 109.47221 * 59.30827 * 14 13 12 39 39 H 1.09005 * 109.47038 * 300.82743 * 15 13 12 40 40 H 1.08994 * 109.47323 * 60.83017 * 15 13 12 41 41 H 1.08997 * 109.47335 * 180.83154 * 15 13 12 42 42 H 1.09003 * 109.47555 * 329.68102 * 16 8 7 43 43 H 1.09010 * 109.47155 * 89.68632 * 16 8 7 44 44 H 0.97004 * 119.99849 * 179.97438 * 21 20 18 45 45 H 1.08005 * 120.10473 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2832 2.3782 0.0005 5 6 1.8939 3.6165 0.0000 6 6 3.2778 3.7122 -0.0016 7 7 3.8917 4.9583 -0.0027 8 6 3.1418 6.0876 -0.1498 9 6 3.1293 7.0093 0.8378 10 6 2.3811 8.1867 0.7344 11 8 2.3935 8.9901 1.6463 12 6 1.5548 8.4647 -0.4946 13 6 2.2120 7.7826 -1.7020 14 6 3.5998 8.3803 -1.9417 15 6 1.3410 7.9891 -2.9428 16 6 2.3419 6.2851 -1.4097 17 6 4.0609 2.5331 -0.0082 18 6 5.4686 2.6148 -0.0163 19 1 5.9620 3.4759 0.4097 20 6 6.2263 1.5800 -0.5762 21 7 5.6442 0.6659 -1.3097 22 14 8.0685 1.5038 -0.2768 23 1 8.3387 0.7053 0.9458 24 1 8.7334 0.8661 -1.4415 25 1 8.5981 2.8794 -0.0966 26 6 3.4230 1.2791 -0.0005 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2051 2.3129 0.0005 31 1 1.2923 4.5134 0.0000 32 1 4.8538 5.0251 0.1013 33 1 3.7124 6.8328 1.7296 34 1 0.5480 8.0717 -0.3535 35 1 1.5068 9.5401 -0.6658 36 1 4.0672 7.8843 -2.7923 37 1 3.5055 9.4461 -2.1495 38 1 4.2157 8.2364 -1.0539 39 1 0.3515 7.5671 -2.7664 40 1 1.2497 9.0554 -3.1493 41 1 1.8011 7.4918 -3.7966 42 1 2.8475 5.7950 -2.2418 43 1 1.3496 5.8524 -1.2817 44 1 6.1695 -0.0512 -1.6981 45 1 4.0102 0.3726 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169953189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:31 Heat of formation + Delta-G solvation = -45.510923 kcal Electronic energy + Delta-G solvation = -26594.336352 eV Core-core repulsion = 22962.754608 eV Total energy + Delta-G solvation = -3631.581743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.41836 -38.91931 -37.78427 -36.82746 -35.02686 -33.51391 -31.21603 -29.92114 -28.80333 -27.92380 -27.41940 -26.88964 -25.97413 -25.25872 -22.27770 -21.06525 -20.16319 -19.86196 -17.87052 -17.20274 -16.76364 -16.32187 -16.08878 -15.47280 -15.03602 -14.87434 -14.83502 -14.66754 -14.40313 -14.13664 -13.79479 -13.25289 -12.98455 -12.76218 -12.51717 -12.27068 -12.20327 -12.12347 -11.80983 -11.72827 -11.63843 -11.49218 -11.27185 -11.18038 -11.17395 -10.80872 -10.74414 -10.64436 -10.44303 -10.17175 -9.62360 -9.43832 -9.26783 -9.15183 -8.30123 -7.60635 -6.89361 -6.32234 -4.45977 1.18841 2.63615 2.90394 3.01064 3.02684 3.09376 3.35314 3.82949 4.05349 4.30160 4.51283 4.52418 4.66871 4.78434 4.88776 5.23914 5.33950 5.45766 5.50803 5.54538 5.61977 5.65659 5.68467 5.70176 5.74489 5.81425 5.87117 5.91256 6.03589 6.06399 6.13683 6.16200 6.26919 6.28970 6.55368 6.63736 6.68698 6.78107 6.99167 7.23957 7.30339 7.40673 7.72688 7.82279 8.00979 8.04502 8.32534 8.43998 8.63698 8.72226 8.82311 10.08292 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.004673 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.619728 B = 5989.887236 C = 7558.604588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.110 3.890 4 C -0.283 4.283 5 C -0.117 4.117 6 C 0.048 3.952 7 N -0.677 5.677 8 C 0.270 3.730 9 C -0.336 4.336 10 C 0.403 3.597 11 O -0.500 6.500 12 C -0.159 4.159 13 C -0.054 4.054 14 C -0.149 4.149 15 C -0.140 4.140 16 C -0.108 4.108 17 C 0.116 3.884 18 C -0.462 4.462 19 H 0.077 0.923 20 C 0.077 3.923 21 N -0.787 5.787 22 Si 0.909 3.091 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.171 4.171 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.410 0.590 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.282 0.718 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 6.779 -3.801 9.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.066 3.934 4 C -0.304 4.304 5 C -0.139 4.139 6 C -0.047 4.047 7 N -0.304 5.304 8 C 0.165 3.835 9 C -0.360 4.360 10 C 0.288 3.712 11 O -0.381 6.381 12 C -0.197 4.197 13 C -0.054 4.054 14 C -0.206 4.206 15 C -0.197 4.197 16 C -0.146 4.146 17 C 0.112 3.888 18 C -0.492 4.492 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.412 5.412 22 Si 0.734 3.266 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.192 4.192 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.250 0.750 33 H 0.144 0.856 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.556 6.740 -3.524 9.419 hybrid contribution 0.953 -0.086 -0.007 0.957 sum -4.604 6.654 -3.531 8.828 Atomic orbital electron populations 1.22747 0.80858 1.01867 1.00429 1.86013 1.19378 1.28928 1.90035 1.18897 0.92437 0.82538 0.99554 1.20235 0.97354 0.91974 1.20810 1.19964 0.92043 0.96097 1.05775 1.17687 0.91059 0.83952 1.11953 1.41146 1.08973 1.01874 1.78401 1.20070 0.86720 0.85521 0.91141 1.21854 1.12483 1.01104 1.00593 1.20317 0.79250 0.84892 0.86759 1.90560 1.60129 1.47335 1.40117 1.22272 1.00528 1.02448 0.94461 1.20597 0.96144 0.93912 0.94793 1.21982 0.95664 1.00553 1.02441 1.21835 0.99399 1.01774 0.96674 1.21381 1.01416 0.95701 0.96130 1.16949 0.92785 0.88367 0.90730 1.19194 0.90741 1.04619 1.34640 0.90523 1.25832 1.01187 0.94407 0.92740 1.69812 1.38344 1.10812 1.22248 0.86285 0.81779 0.79628 0.78908 1.19207 1.20240 1.18690 1.20424 0.89329 0.98777 1.10717 0.89943 0.93761 0.93742 0.88400 0.88585 0.74981 0.85622 0.88620 0.89341 0.92051 0.92469 0.92097 0.92296 0.92341 0.92091 0.89085 0.88988 0.90656 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.81 101.05 0.99 1.56 16 2 O -0.33 -6.97 10.49 -19.53 -0.20 -7.18 16 3 C 0.11 2.53 6.67 -39.28 -0.26 2.27 16 4 C -0.28 -5.93 9.03 -39.20 -0.35 -6.29 16 5 C -0.12 -2.40 8.79 -39.46 -0.35 -2.75 16 6 C 0.05 1.04 6.53 -83.21 -0.54 0.50 16 7 N -0.68 -12.50 5.15 -6.51 -0.03 -12.53 16 8 C 0.27 4.29 4.23 -81.78 -0.35 3.94 16 9 C -0.34 -5.48 8.66 -40.08 -0.35 -5.82 16 10 C 0.40 6.40 6.05 -33.70 -0.20 6.20 16 11 O -0.50 -9.57 17.82 5.34 0.10 -9.48 16 12 C -0.16 -1.93 4.90 -27.65 -0.14 -2.07 16 13 C -0.05 -0.60 0.78 -154.21 -0.12 -0.73 16 14 C -0.15 -1.68 8.10 37.16 0.30 -1.38 16 15 C -0.14 -1.27 8.50 37.16 0.32 -0.96 16 16 C -0.11 -1.45 4.01 -27.89 -0.11 -1.56 16 17 C 0.12 2.81 5.57 -106.66 -0.59 2.22 16 18 C -0.46 -11.01 8.52 -37.90 -0.32 -11.33 16 19 H 0.08 1.71 6.65 -52.49 -0.35 1.36 16 20 C 0.08 1.80 5.22 -17.33 -0.09 1.71 16 21 N -0.79 -19.29 10.86 55.55 0.60 -18.68 16 22 Si 0.91 17.62 29.58 -169.99 -5.03 12.60 16 23 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 26 C -0.17 -4.30 8.58 -38.79 -0.33 -4.63 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 29 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 30 H 0.10 1.80 6.26 -52.49 -0.33 1.47 16 31 H 0.10 1.75 5.46 -52.49 -0.29 1.47 16 32 H 0.41 7.45 7.05 -40.82 -0.29 7.17 16 33 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.77 6.13 -51.93 -0.32 0.46 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.09 1.22 6.53 -51.92 -0.34 0.88 16 44 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 45 H 0.13 3.49 6.19 -52.48 -0.33 3.16 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -27.70 358.38 -8.06 -35.77 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -6.39 Total: 13.22 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -2.50 Total: -19.11 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.57 Total: -31.22 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.11 Total: -16.65 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.70 -8.06 -35.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169953189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.745 kcal (2) G-P(sol) polarization free energy of solvation -27.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds