Wall clock time and date at job start Tue Mar 31 2020 11:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 120.00092 * 2 1 4 4 C 1.50700 * 119.99803 * 359.97438 * 3 2 1 5 5 N 1.46902 * 109.46775 * 80.00512 * 4 3 2 6 6 C 1.46902 * 110.99871 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47257 * 325.00066 * 6 5 4 8 8 C 1.52995 * 109.47180 * 84.99879 * 6 5 4 9 9 C 1.52998 * 109.46984 * 205.00014 * 6 5 4 10 10 C 1.52994 * 109.47293 * 65.00136 * 9 6 5 11 11 C 1.50705 * 109.47153 * 179.97438 * 10 9 6 12 12 H 1.07995 * 120.00005 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99744 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00186 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99704 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47253 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47417 * 119.99727 * 15 13 11 18 18 H 1.48499 * 109.47049 * 239.99843 * 15 13 11 19 19 C 1.38209 * 119.99907 * 179.76402 * 3 2 1 20 20 C 1.38260 * 120.00092 * 0.53621 * 19 3 2 21 21 C 1.38212 * 119.99650 * 359.45889 * 20 19 3 22 22 C 1.38216 * 119.99819 * 180.02562 * 2 1 3 23 23 C 1.50700 * 120.00003 * 359.97438 * 22 2 1 24 24 F 1.39894 * 109.47101 * 179.97438 * 23 22 2 25 25 F 1.39897 * 109.47125 * 299.97598 * 23 22 2 26 26 F 1.39898 * 109.47199 * 59.97804 * 23 22 2 27 27 H 1.08990 * 109.46945 * 269.98333 * 1 2 3 28 28 H 1.09001 * 109.46746 * 29.97972 * 1 2 3 29 29 H 1.08996 * 109.46909 * 149.97638 * 1 2 3 30 30 H 1.09004 * 109.46832 * 199.99874 * 4 3 2 31 31 H 1.08997 * 109.47361 * 320.00317 * 4 3 2 32 32 H 1.00898 * 111.00383 * 56.04399 * 5 4 3 33 33 H 1.08997 * 109.47583 * 300.00122 * 8 6 5 34 34 H 1.09007 * 109.47331 * 60.00101 * 8 6 5 35 35 H 1.09001 * 109.47416 * 180.02562 * 8 6 5 36 36 H 1.09004 * 109.47055 * 184.99966 * 9 6 5 37 37 H 1.08998 * 109.47355 * 304.99639 * 9 6 5 38 38 H 1.08996 * 109.47214 * 299.99995 * 10 9 6 39 39 H 1.09004 * 109.47331 * 59.99904 * 10 9 6 40 40 H 0.96995 * 119.99816 * 179.97438 * 14 13 11 41 41 H 1.08004 * 120.00239 * 180.27311 * 19 3 2 42 42 H 1.08002 * 120.00476 * 179.74522 * 20 19 3 43 43 H 1.07999 * 119.99941 * 180.27784 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 1.4448 2.5024 -0.0006 5 7 0.9913 2.8065 1.3632 6 6 0.2517 4.0752 1.4014 7 1 0.6872 4.7714 0.6846 8 6 -1.2136 3.8223 1.0409 9 6 0.3353 4.6721 2.8076 10 6 1.7870 5.0404 3.1199 11 6 1.8692 5.6290 4.5048 12 1 0.9754 5.7305 5.1023 13 6 3.0855 6.0388 5.0086 14 7 4.1739 5.9156 4.2808 15 14 3.1875 6.7676 6.7255 16 1 1.8325 6.7962 7.3325 17 1 4.0883 5.9361 7.5636 18 1 3.7227 8.1505 6.6452 19 6 3.5804 1.1973 0.0049 20 6 4.2718 -0.0001 -0.0013 21 6 3.5807 -1.1970 -0.0012 22 6 2.1981 -1.1970 -0.0005 23 6 1.4446 -2.5021 -0.0005 24 9 2.3536 -3.5654 -0.0017 25 9 0.6411 -2.5767 1.1423 26 9 0.6394 -2.5757 -1.1422 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 2.0997 3.2998 -0.3520 31 1 0.5817 2.4233 -0.6614 32 1 1.7676 2.8214 2.0076 33 1 -1.2732 3.3970 0.0391 34 1 -1.6492 3.1260 1.7577 35 1 -1.7623 4.7637 1.0688 36 1 -0.2859 5.5663 2.8603 37 1 -0.0184 3.9408 3.5344 38 1 2.4081 4.1463 3.0672 39 1 2.1407 5.7718 2.3931 40 1 5.0295 6.2042 4.6351 41 1 4.1205 2.1326 0.0094 42 1 5.3518 -0.0001 -0.0017 43 1 4.1206 -2.1323 -0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:58 Heat of formation + Delta-G solvation = -148.417774 kcal Electronic energy + Delta-G solvation = -26553.263383 eV Core-core repulsion = 22375.362523 eV Total energy + Delta-G solvation = -4177.900860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.30147 -47.82614 -47.69941 -39.91462 -37.16738 -33.86598 -33.07375 -32.64678 -30.40537 -29.14196 -27.54566 -25.81918 -25.45983 -24.46162 -21.72989 -21.46303 -20.86768 -19.58434 -18.58026 -18.54468 -18.00979 -16.50420 -16.05280 -15.83426 -15.32021 -14.92884 -14.76931 -14.57371 -14.53006 -14.22612 -14.13461 -13.90172 -13.87430 -13.62236 -13.40010 -12.81970 -12.71088 -12.59907 -12.48776 -12.37790 -12.18223 -12.07567 -11.68082 -11.50168 -11.25641 -11.15068 -10.98840 -10.78148 -10.49666 -10.30798 -9.80168 -9.32086 -9.20995 -9.06082 -8.78154 -8.39572 -8.05389 -6.04459 -4.06130 0.86226 1.15472 2.57273 3.28700 3.35521 3.36564 3.40825 3.62935 3.93057 4.33088 4.43284 4.53206 4.66482 4.70679 4.90400 5.05908 5.15576 5.31878 5.35401 5.47464 5.50281 5.55805 5.66446 5.69600 5.76757 5.83936 5.88037 6.07113 6.13587 6.15380 6.25437 6.30866 6.46221 6.47749 6.49673 6.70204 6.86990 7.04165 7.41491 7.57628 7.74949 7.82876 7.95302 8.38895 9.00677 9.58416 11.06820 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.003098 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.978161 B = 9037.011445 C = 9699.810572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.007 4.007 3 C -0.083 4.083 4 C 0.096 3.904 5 N -0.680 5.680 6 C 0.082 3.918 7 H 0.038 0.962 8 C -0.136 4.136 9 C -0.114 4.114 10 C 0.020 3.980 11 C -0.518 4.518 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.073 4.073 20 C -0.129 4.129 21 C -0.073 4.073 22 C -0.195 4.195 23 C 0.511 3.489 24 F -0.181 7.181 25 F -0.175 7.175 26 F -0.178 7.178 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.354 0.646 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.015 0.985 39 H 0.012 0.988 40 H 0.259 0.741 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -14.802 -12.937 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.008 4.008 3 C -0.083 4.083 4 C -0.033 4.033 5 N -0.315 5.315 6 C -0.027 4.027 7 H 0.056 0.944 8 C -0.194 4.194 9 C -0.152 4.152 10 C -0.017 4.017 11 C -0.557 4.557 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.091 4.091 20 C -0.147 4.147 21 C -0.091 4.091 22 C -0.197 4.197 23 C 0.457 3.543 24 F -0.162 7.162 25 F -0.156 7.156 26 F -0.159 7.159 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.176 0.824 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.535 -15.174 -12.970 20.470 hybrid contribution 0.965 0.819 0.896 1.551 sum -3.570 -14.355 -12.074 19.094 Atomic orbital electron populations 1.21100 0.90123 1.03312 1.04081 1.19462 0.96638 0.90878 0.93817 1.19739 0.93354 0.94590 1.00631 1.20915 0.97634 0.91892 0.92844 1.60650 1.30626 1.34416 1.05778 1.21622 0.93494 0.88866 0.98705 0.94355 1.21797 0.96183 1.00938 1.00510 1.21825 1.01028 0.99183 0.93181 1.19128 0.89821 0.96140 0.96576 1.21274 0.93490 1.40444 1.00445 0.92623 1.25015 0.95875 0.95936 0.97580 1.69958 0.98635 1.47980 1.36972 0.86554 0.78115 0.78799 0.84659 1.19713 1.21002 1.21065 1.21422 0.93739 0.98879 0.95093 1.21089 1.00367 0.91640 1.01571 1.20936 0.92058 0.99465 0.96673 1.19782 0.94880 0.91423 1.13585 1.18278 0.77401 0.84839 0.73747 1.93144 1.67078 1.59715 1.96260 1.93226 1.74718 1.96722 1.50923 1.93160 1.74746 1.96623 1.51397 0.89261 0.90190 0.91600 0.94175 0.90157 0.82375 0.93840 0.92296 0.92992 0.92692 0.92425 0.96694 0.96996 0.93105 0.84908 0.84924 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.58 36.01 0.31 -1.18 16 2 C -0.01 -0.09 5.84 -104.62 -0.61 -0.70 16 3 C -0.08 -1.06 5.39 -104.63 -0.56 -1.62 16 4 C 0.10 1.26 5.00 -4.98 -0.02 1.23 16 5 N -0.68 -10.53 6.30 -107.99 -0.68 -11.21 16 6 C 0.08 1.33 2.65 -67.72 -0.18 1.15 16 7 H 0.04 0.64 7.80 -51.93 -0.40 0.24 16 8 C -0.14 -1.85 9.41 37.16 0.35 -1.50 16 9 C -0.11 -2.26 4.74 -26.74 -0.13 -2.39 16 10 C 0.02 0.50 4.80 -27.88 -0.13 0.37 16 11 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 15 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.07 -0.88 9.67 -39.58 -0.38 -1.26 16 20 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 21 C -0.07 -0.80 9.43 -39.58 -0.37 -1.17 16 22 C -0.20 -2.36 5.37 -104.62 -0.56 -2.93 16 23 C 0.51 6.00 2.81 36.01 0.10 6.10 16 24 F -0.18 -2.04 15.97 2.25 0.04 -2.01 16 25 F -0.17 -2.19 16.44 2.25 0.04 -2.16 16 26 F -0.18 -2.06 15.33 2.25 0.03 -2.03 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 0.85 6.12 -51.93 -0.32 0.54 16 29 H 0.07 0.71 5.52 -51.93 -0.29 0.42 16 30 H 0.04 0.54 7.92 -51.93 -0.41 0.12 16 31 H 0.08 0.96 5.70 -51.93 -0.30 0.66 16 32 H 0.35 6.31 6.46 -39.29 -0.25 6.06 16 33 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 34 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.01 0.38 6.42 -51.93 -0.33 0.05 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.13 1.51 8.04 -52.48 -0.42 1.09 16 42 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.13 1.21 7.16 -52.49 -0.38 0.83 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -28.96 358.06 -8.46 -37.42 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.99 Total: 2.58 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -3.01 Total: -18.86 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.06 Total: -36.78 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.11 Total: -6.19 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.96 -8.46 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.001 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds