Wall clock time and date at job start Tue Mar 31 2020 12:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.29446 * 117.95930 * 2 1 4 4 C 1.50697 * 117.96558 * 0.49576 * 3 2 1 5 5 C 1.50073 * 124.07267 * 180.46844 * 3 2 1 6 6 C 1.53023 * 110.14883 * 342.87166 * 5 3 2 7 7 H 1.09007 * 109.64203 * 289.54137 * 6 5 3 8 8 C 1.50697 * 109.64308 * 169.12149 * 6 5 3 9 9 O 1.21293 * 120.00247 * 240.00294 * 8 6 5 10 10 N 1.34775 * 120.00168 * 59.99759 * 8 6 5 11 11 C 1.39993 * 120.00251 * 175.55660 * 10 8 6 12 12 C 1.38918 * 120.00309 * 214.86717 * 11 10 8 13 13 C 1.38000 * 119.99697 * 179.76661 * 12 11 10 14 14 C 1.38910 * 120.00556 * 0.48185 * 13 12 11 15 15 O 1.35777 * 120.00430 * 179.74880 * 14 13 12 16 16 C 1.34811 * 116.99932 * 185.40566 * 15 14 13 17 17 H 1.07999 * 120.00206 * 354.95587 * 16 15 14 18 18 C 1.38638 * 119.99657 * 174.95928 * 16 15 14 19 19 N 1.31567 * 119.99689 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00088 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47433 * 89.99767 * 20 18 16 22 22 H 1.48497 * 109.46970 * 210.00009 * 20 18 16 23 23 H 1.48505 * 109.46895 * 329.99904 * 20 18 16 24 24 C 1.38906 * 119.99842 * 359.77053 * 14 13 12 25 25 C 1.38010 * 120.00245 * 359.97438 * 24 14 13 26 26 C 1.53391 * 108.43688 * 49.43545 * 6 5 3 27 27 C 1.50064 * 117.96370 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47638 * 64.75815 * 1 2 3 29 29 H 1.09000 * 109.46941 * 184.75639 * 1 2 3 30 30 H 1.09005 * 109.47063 * 304.75835 * 1 2 3 31 31 H 1.08996 * 109.46966 * 275.25623 * 4 3 2 32 32 H 1.08997 * 109.47020 * 35.25015 * 4 3 2 33 33 H 1.09002 * 109.47436 * 155.25174 * 4 3 2 34 34 H 1.09007 * 109.35699 * 222.66308 * 5 3 2 35 35 H 1.08999 * 109.35737 * 103.07816 * 5 3 2 36 36 H 0.97004 * 120.00253 * 355.55857 * 10 8 6 37 37 H 1.07998 * 120.00328 * 359.97438 * 12 11 10 38 38 H 1.08001 * 120.00013 * 180.20645 * 13 12 11 39 39 H 0.97007 * 119.99976 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.00174 * 179.97438 * 24 14 13 41 41 H 1.07999 * 119.99567 * 179.97438 * 25 24 14 42 42 H 1.09000 * 109.64251 * 52.25004 * 26 6 5 43 43 H 1.09001 * 109.64175 * 172.88011 * 26 6 5 44 44 H 1.08999 * 109.35884 * 283.07566 * 27 2 1 45 45 H 1.09005 * 109.35894 * 42.66525 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1138 1.1434 0.0000 4 6 1.2696 2.3916 0.0115 5 6 3.6060 1.3032 -0.0102 6 6 4.2793 -0.0073 0.4031 7 1 4.1086 -0.1882 1.4644 8 6 5.7599 0.0775 0.1354 9 8 6.2847 -0.7083 -0.6251 10 7 6.5010 1.0265 0.7409 11 6 7.8897 1.0480 0.5657 12 6 8.7156 1.4438 1.6102 13 6 10.0849 1.4604 1.4388 14 6 10.6368 1.0909 0.2187 15 8 11.9836 1.1122 0.0485 16 6 12.4482 0.8510 -1.1898 17 1 11.7643 0.5580 -1.9725 18 6 13.8041 0.9585 -1.4583 19 7 14.2576 0.7032 -2.6667 20 14 14.9870 1.4660 -0.1046 21 1 15.4764 0.2564 0.6043 22 1 16.1384 2.1909 -0.6995 23 1 14.2865 2.3541 0.8576 24 6 9.8106 0.7002 -0.8274 25 6 8.4416 0.6785 -0.6545 26 6 3.6704 -1.1472 -0.4232 27 6 2.2106 -1.3254 0.0006 28 1 -0.3634 0.4382 -0.9295 29 1 -0.3633 -1.0241 0.0852 30 1 -0.3633 0.5859 0.8443 31 1 0.9802 2.6439 -1.0086 32 1 0.3754 2.2199 0.6108 33 1 1.8423 3.2137 0.4407 34 1 3.8897 2.0910 0.6878 35 1 3.9332 1.5769 -1.0132 36 1 6.0721 1.6946 1.2983 37 1 8.2864 1.7353 2.5573 38 1 10.7272 1.7649 2.2518 39 1 15.2063 0.7788 -2.8547 40 1 10.2397 0.4133 -1.7761 41 1 7.7994 0.3751 -1.4680 42 1 3.7166 -0.8967 -1.4831 43 1 4.2210 -2.0693 -0.2372 44 1 2.1745 -1.7532 1.0025 45 1 1.7121 -1.9995 -0.6961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332449006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:00 Heat of formation + Delta-G solvation = -37.270486 kcal Electronic energy + Delta-G solvation = -25300.984317 eV Core-core repulsion = 21669.759906 eV Total energy + Delta-G solvation = -3631.224411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63516 -39.27425 -38.46567 -36.62516 -34.10014 -33.74285 -32.33702 -32.01871 -30.28448 -28.63548 -27.42963 -26.66490 -25.12846 -23.49359 -22.88060 -22.16819 -20.94781 -19.84591 -18.10667 -17.60315 -17.42774 -16.76241 -16.60530 -15.35590 -15.20874 -14.95414 -14.79916 -14.23366 -14.10416 -14.00257 -13.92922 -13.78423 -13.65402 -13.14701 -12.74028 -12.71793 -12.45966 -12.40811 -12.27338 -12.17365 -12.07864 -12.03611 -11.70670 -11.61115 -11.16532 -10.98866 -10.94590 -10.72346 -10.55330 -10.23411 -9.70187 -9.58096 -9.21110 -8.81746 -8.75583 -8.27902 -7.05529 -6.39689 -4.05528 1.88733 1.99907 2.12515 2.81250 3.23759 3.25281 3.27378 3.40760 4.24778 4.27408 4.31779 4.49125 4.60160 4.71559 4.84949 4.88932 4.94399 5.10495 5.11934 5.13544 5.17246 5.22280 5.25404 5.37246 5.52055 5.55719 5.60386 5.61681 5.64547 5.68238 5.69213 5.71683 5.95726 6.06889 6.10057 6.13471 6.26176 6.37496 6.60410 6.76329 6.77376 6.91485 7.11574 7.31001 7.56666 7.68438 7.81305 8.04245 8.35011 8.95219 9.57108 10.67911 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.034843 B = 0.002297 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.421140 B =12185.867015 C =12465.711354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.129 4.129 3 C -0.130 4.130 4 C -0.123 4.123 5 C -0.071 4.071 6 C -0.104 4.104 7 H 0.099 0.901 8 C 0.510 3.490 9 O -0.522 6.522 10 N -0.662 5.662 11 C 0.043 3.957 12 C -0.096 4.096 13 C -0.178 4.178 14 C 0.151 3.849 15 O -0.217 6.217 16 C -0.388 4.388 17 H 0.107 0.893 18 C 0.062 3.938 19 N -0.879 5.879 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.207 4.207 25 C -0.066 4.066 26 C -0.099 4.099 27 C -0.081 4.081 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.401 0.599 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.574 1.842 8.259 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.129 4.129 3 C -0.130 4.130 4 C -0.179 4.179 5 C -0.109 4.109 6 C -0.125 4.125 7 H 0.117 0.883 8 C 0.297 3.703 9 O -0.398 6.398 10 N -0.307 5.307 11 C -0.049 4.049 12 C -0.117 4.117 13 C -0.198 4.198 14 C 0.099 3.901 15 O -0.122 6.122 16 C -0.464 4.464 17 H 0.124 0.876 18 C -0.141 4.141 19 N -0.517 5.517 20 Si 0.732 3.268 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.227 4.227 25 C -0.086 4.086 26 C -0.137 4.137 27 C -0.118 4.118 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.236 0.764 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.145 0.855 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.842 1.290 7.716 27.000 hybrid contribution 0.387 0.503 0.639 0.901 sum -25.456 1.793 8.355 26.852 Atomic orbital electron populations 1.20948 0.92727 1.02115 1.01780 1.20725 0.95581 0.94488 1.02061 1.20558 0.94724 0.94824 1.02864 1.20989 0.99298 0.95610 1.02009 1.20353 0.92025 0.95934 1.02553 1.21391 0.90934 0.97762 1.02417 0.88322 1.20662 0.88818 0.80249 0.80596 1.90718 1.73129 1.41109 1.34816 1.43279 1.05892 1.30884 1.50602 1.17342 0.81591 1.10980 0.95031 1.20352 0.92454 1.02294 0.96564 1.19983 0.93874 1.09177 0.96724 1.19147 0.83808 0.93665 0.93494 1.83561 1.16748 1.78819 1.33045 1.20780 0.93960 1.46827 0.84824 0.87581 1.24475 0.96579 0.96077 0.96959 1.69658 1.15689 1.46987 1.19362 0.86167 0.79661 0.79492 0.81487 1.19899 1.20843 1.18359 1.21237 0.92887 1.07671 1.00875 1.20909 0.94637 0.97585 0.95508 1.21433 0.94368 0.97951 0.99962 1.20443 0.94845 0.94677 1.01853 0.91757 0.92326 0.91610 0.91631 0.91510 0.92125 0.90590 0.90266 0.76412 0.86604 0.86094 0.91064 0.84600 0.85501 0.90993 0.90434 0.90856 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 8.69 36.00 0.31 -0.40 16 2 C -0.13 -0.98 5.84 -100.95 -0.59 -1.57 16 3 C -0.13 -1.01 5.84 -100.94 -0.59 -1.59 16 4 C -0.12 -0.76 9.19 36.00 0.33 -0.43 16 5 C -0.07 -0.59 4.90 -28.17 -0.14 -0.73 16 6 C -0.10 -1.00 2.59 -91.56 -0.24 -1.24 16 7 H 0.10 0.82 8.13 -51.92 -0.42 0.40 16 8 C 0.51 7.00 6.98 -10.99 -0.08 6.92 16 9 O -0.52 -9.44 13.34 5.55 0.07 -9.37 16 10 N -0.66 -8.67 5.26 -9.82 -0.05 -8.72 16 11 C 0.04 0.74 6.30 -83.63 -0.53 0.21 16 12 C -0.10 -1.60 9.96 -39.42 -0.39 -1.99 16 13 C -0.18 -3.47 9.98 -39.42 -0.39 -3.87 16 14 C 0.15 3.53 6.65 -39.09 -0.26 3.27 16 15 O -0.22 -5.76 8.58 0.02 0.00 -5.76 16 16 C -0.39 -11.08 9.94 30.88 0.31 -10.78 16 17 H 0.11 3.11 5.43 -52.49 -0.28 2.83 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.67 13.96 55.48 0.77 -24.89 16 20 Si 0.91 21.79 28.62 -169.99 -4.86 16.92 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.21 -4.69 9.16 -39.42 -0.36 -5.05 16 25 C -0.07 -1.34 8.69 -39.41 -0.34 -1.68 16 26 C -0.10 -0.99 4.70 -26.51 -0.12 -1.11 16 27 C -0.08 -0.63 5.69 -28.17 -0.16 -0.79 16 28 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 29 H 0.06 0.32 7.93 -51.93 -0.41 -0.10 16 30 H 0.07 0.35 6.76 -51.93 -0.35 0.00 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.36 6.06 -51.93 -0.31 0.05 16 33 H 0.06 0.35 7.98 -51.93 -0.41 -0.07 16 34 H 0.08 0.50 7.74 -51.93 -0.40 0.10 16 35 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.40 3.74 8.37 -40.82 -0.34 3.40 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.14 3.25 5.63 -52.48 -0.30 2.95 16 41 H 0.13 2.56 6.23 -52.49 -0.33 2.24 16 42 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 43 H 0.08 0.85 7.89 -51.93 -0.41 0.44 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -32.06 362.94 -8.42 -40.48 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.48 Total: 5.02 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -3.34 Total: -19.15 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.72 Total: -33.61 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.07 Total: -15.13 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.06 -8.42 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332449006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.212 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds