Wall clock time and date at job start Tue Mar 31 2020 12:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.29446 * 117.95930 * 2 1 4 4 C 1.50697 * 117.96558 * 0.49576 * 3 2 1 5 5 C 1.50073 * 124.07267 * 180.46844 * 3 2 1 6 6 C 1.53023 * 110.14883 * 342.87166 * 5 3 2 7 7 H 1.09007 * 109.64203 * 289.54137 * 6 5 3 8 8 C 1.50697 * 109.64308 * 169.12149 * 6 5 3 9 9 O 1.21293 * 120.00247 * 240.00294 * 8 6 5 10 10 N 1.34775 * 120.00168 * 59.99759 * 8 6 5 11 11 C 1.39993 * 120.00251 * 175.55660 * 10 8 6 12 12 C 1.38918 * 120.00309 * 214.86717 * 11 10 8 13 13 C 1.38000 * 119.99697 * 179.76661 * 12 11 10 14 14 C 1.38910 * 120.00556 * 0.48185 * 13 12 11 15 15 O 1.35777 * 120.00430 * 179.74880 * 14 13 12 16 16 C 1.34811 * 116.99932 * 185.40566 * 15 14 13 17 17 H 1.07999 * 120.00206 * 354.95587 * 16 15 14 18 18 C 1.38638 * 119.99657 * 174.95928 * 16 15 14 19 19 N 1.31567 * 119.99689 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00088 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47433 * 89.99767 * 20 18 16 22 22 H 1.48497 * 109.46970 * 210.00009 * 20 18 16 23 23 H 1.48505 * 109.46895 * 329.99904 * 20 18 16 24 24 C 1.38906 * 119.99842 * 359.77053 * 14 13 12 25 25 C 1.38010 * 120.00245 * 359.97438 * 24 14 13 26 26 C 1.53391 * 108.43688 * 49.43545 * 6 5 3 27 27 C 1.50064 * 117.96370 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47638 * 64.75815 * 1 2 3 29 29 H 1.09000 * 109.46941 * 184.75639 * 1 2 3 30 30 H 1.09005 * 109.47063 * 304.75835 * 1 2 3 31 31 H 1.08996 * 109.46966 * 275.25623 * 4 3 2 32 32 H 1.08997 * 109.47020 * 35.25015 * 4 3 2 33 33 H 1.09002 * 109.47436 * 155.25174 * 4 3 2 34 34 H 1.09007 * 109.35699 * 222.66308 * 5 3 2 35 35 H 1.08999 * 109.35737 * 103.07816 * 5 3 2 36 36 H 0.97004 * 120.00253 * 355.55857 * 10 8 6 37 37 H 1.07998 * 120.00328 * 359.97438 * 12 11 10 38 38 H 1.08001 * 120.00013 * 180.20645 * 13 12 11 39 39 H 0.97007 * 119.99976 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.00174 * 179.97438 * 24 14 13 41 41 H 1.07999 * 119.99567 * 179.97438 * 25 24 14 42 42 H 1.09000 * 109.64251 * 52.25004 * 26 6 5 43 43 H 1.09001 * 109.64175 * 172.88011 * 26 6 5 44 44 H 1.08999 * 109.35884 * 283.07566 * 27 2 1 45 45 H 1.09005 * 109.35894 * 42.66525 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1138 1.1434 0.0000 4 6 1.2696 2.3916 0.0115 5 6 3.6060 1.3032 -0.0102 6 6 4.2793 -0.0073 0.4031 7 1 4.1086 -0.1882 1.4644 8 6 5.7599 0.0775 0.1354 9 8 6.2847 -0.7083 -0.6251 10 7 6.5010 1.0265 0.7409 11 6 7.8897 1.0480 0.5657 12 6 8.7156 1.4438 1.6102 13 6 10.0849 1.4604 1.4388 14 6 10.6368 1.0909 0.2187 15 8 11.9836 1.1122 0.0485 16 6 12.4482 0.8510 -1.1898 17 1 11.7643 0.5580 -1.9725 18 6 13.8041 0.9585 -1.4583 19 7 14.2576 0.7032 -2.6667 20 14 14.9870 1.4660 -0.1046 21 1 15.4764 0.2564 0.6043 22 1 16.1384 2.1909 -0.6995 23 1 14.2865 2.3541 0.8576 24 6 9.8106 0.7002 -0.8274 25 6 8.4416 0.6785 -0.6545 26 6 3.6704 -1.1472 -0.4232 27 6 2.2106 -1.3254 0.0006 28 1 -0.3634 0.4382 -0.9295 29 1 -0.3633 -1.0241 0.0852 30 1 -0.3633 0.5859 0.8443 31 1 0.9802 2.6439 -1.0086 32 1 0.3754 2.2199 0.6108 33 1 1.8423 3.2137 0.4407 34 1 3.8897 2.0910 0.6878 35 1 3.9332 1.5769 -1.0132 36 1 6.0721 1.6946 1.2983 37 1 8.2864 1.7353 2.5573 38 1 10.7272 1.7649 2.2518 39 1 15.2063 0.7788 -2.8547 40 1 10.2397 0.4133 -1.7761 41 1 7.7994 0.3751 -1.4680 42 1 3.7166 -0.8967 -1.4831 43 1 4.2210 -2.0693 -0.2372 44 1 2.1745 -1.7532 1.0025 45 1 1.7121 -1.9995 -0.6961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332449006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:58 Heat of formation + Delta-G solvation = -56.004836 kcal Electronic energy + Delta-G solvation = -25301.796700 eV Core-core repulsion = 21669.759906 eV Total energy + Delta-G solvation = -3632.036793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.79537 -40.71955 -39.56780 -38.18693 -35.47773 -34.56733 -34.32182 -32.69776 -31.90703 -29.98000 -28.27879 -27.41192 -26.96661 -24.39870 -24.00558 -23.50244 -22.30367 -21.01294 -19.91964 -19.27107 -18.43083 -18.09348 -17.76470 -16.61179 -16.19785 -15.92975 -15.78552 -15.70735 -15.63420 -15.44752 -15.09723 -14.75687 -14.70051 -14.44905 -14.22090 -14.05866 -13.88698 -13.41005 -13.30303 -13.20829 -12.99092 -12.83148 -12.72942 -12.62928 -12.49151 -12.47762 -12.04253 -11.91170 -11.67325 -11.49512 -11.28939 -11.09955 -10.73789 -10.58755 -9.87832 -9.37321 -8.69339 -8.50105 -6.22727 0.45311 0.50080 1.32226 1.32579 1.36929 1.53092 1.61619 2.10907 2.28607 2.75275 3.01767 3.15747 3.47285 3.66095 3.82789 4.03342 4.08211 4.11723 4.15388 4.32775 4.41225 4.44830 4.54931 4.56479 4.60599 4.67499 4.72116 4.76738 4.83908 4.96217 5.01313 5.04436 5.06763 5.07026 5.18063 5.18492 5.24160 5.27660 5.33478 5.36934 5.48415 5.58648 5.73867 5.82446 5.90185 6.18580 6.20768 6.51883 6.83305 7.22378 7.55852 8.61740 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.034843 B = 0.002297 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.421140 B =12185.867015 C =12465.711354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.136 4.136 3 C -0.138 4.138 4 C -0.121 4.121 5 C -0.069 4.069 6 C -0.091 4.091 7 H 0.125 0.875 8 C 0.509 3.491 9 O -0.570 6.570 10 N -0.648 5.648 11 C 0.069 3.931 12 C -0.078 4.078 13 C -0.167 4.167 14 C 0.112 3.888 15 O -0.240 6.240 16 C -0.401 4.401 17 H 0.075 0.925 18 C 0.006 3.994 19 N -0.925 5.925 20 Si 0.977 3.023 21 H -0.266 1.266 22 H -0.268 1.268 23 H -0.257 1.257 24 C -0.224 4.224 25 C -0.082 4.082 26 C -0.101 4.101 27 C -0.077 4.077 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.427 0.573 37 H 0.174 0.826 38 H 0.145 0.855 39 H 0.285 0.715 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.385 3.304 12.181 31.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.136 4.136 3 C -0.138 4.138 4 C -0.178 4.178 5 C -0.107 4.107 6 C -0.112 4.112 7 H 0.143 0.857 8 C 0.298 3.702 9 O -0.448 6.448 10 N -0.295 5.295 11 C -0.024 4.024 12 C -0.098 4.098 13 C -0.186 4.186 14 C 0.062 3.938 15 O -0.147 6.147 16 C -0.477 4.477 17 H 0.092 0.908 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.798 3.202 21 H -0.191 1.191 22 H -0.193 1.193 23 H -0.181 1.181 24 C -0.244 4.244 25 C -0.103 4.103 26 C -0.139 4.139 27 C -0.114 4.114 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.266 0.734 37 H 0.192 0.808 38 H 0.163 0.837 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -28.737 2.777 11.670 31.140 hybrid contribution 0.865 -0.004 -0.557 1.029 sum -27.871 2.773 11.113 30.133 Atomic orbital electron populations 1.20954 0.91450 1.02729 1.02281 1.20893 0.96610 0.94183 1.01896 1.20656 0.94390 0.95599 1.03166 1.20997 0.99537 0.95010 1.02213 1.20367 0.92501 0.95474 1.02315 1.21387 0.87461 0.98569 1.03777 0.85673 1.21482 0.90395 0.79167 0.79163 1.90722 1.74309 1.42967 1.36793 1.43220 1.04023 1.31536 1.50706 1.17496 0.83898 1.07354 0.93700 1.20871 0.90919 0.99799 0.98187 1.20417 0.95583 1.07244 0.95399 1.19688 0.82967 0.95734 0.95368 1.83500 1.18422 1.81290 1.31496 1.20673 0.94131 1.47461 0.85430 0.90783 1.25372 0.98150 0.96142 0.99511 1.69754 1.16424 1.49059 1.21374 0.85129 0.77387 0.79354 0.78291 1.19087 1.19259 1.18097 1.21121 0.94279 1.09004 1.00010 1.20895 0.93372 0.98855 0.97131 1.21407 0.96019 0.97419 0.99028 1.20419 0.93038 0.95310 1.02601 0.91624 0.91834 0.90568 0.91786 0.90488 0.91434 0.88193 0.91838 0.73410 0.80839 0.83706 0.90549 0.87832 0.86352 0.92975 0.92031 0.89610 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.69 71.23 0.62 -0.46 16 2 C -0.14 -1.72 5.84 -15.10 -0.09 -1.80 16 3 C -0.14 -1.74 5.84 -15.10 -0.09 -1.83 16 4 C -0.12 -1.13 9.19 71.23 0.65 -0.48 16 5 C -0.07 -0.95 4.90 29.66 0.15 -0.80 16 6 C -0.09 -1.53 2.59 -11.40 -0.03 -1.56 16 7 H 0.13 1.53 8.13 -2.38 -0.02 1.51 16 8 C 0.51 13.04 6.98 87.66 0.61 13.65 16 9 O -0.57 -20.76 13.34 -3.07 -0.04 -20.80 16 10 N -0.65 -14.69 5.26 -303.38 -1.60 -16.29 16 11 C 0.07 2.21 6.30 38.16 0.24 2.45 16 12 C -0.08 -2.24 9.96 22.38 0.22 -2.01 16 13 C -0.17 -6.11 9.98 22.37 0.22 -5.89 16 14 C 0.11 5.35 6.65 22.59 0.15 5.50 16 15 O -0.24 -13.21 8.58 -22.84 -0.20 -13.40 16 16 C -0.40 -24.37 9.94 67.92 0.68 -23.69 16 17 H 0.07 4.81 5.43 -2.91 -0.02 4.80 16 18 C 0.01 0.37 5.49 84.83 0.47 0.84 16 19 N -0.93 -56.75 13.96 21.61 0.30 -56.45 16 20 Si 0.98 45.86 28.62 68.60 1.96 47.83 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 24 C -0.22 -10.80 9.16 22.38 0.20 -10.60 16 25 C -0.08 -3.38 8.69 22.38 0.19 -3.19 16 26 C -0.10 -1.92 4.70 30.74 0.14 -1.77 16 27 C -0.08 -1.04 5.69 29.66 0.17 -0.87 16 28 H 0.07 0.59 8.07 -2.39 -0.02 0.57 16 29 H 0.06 0.52 7.93 -2.39 -0.02 0.50 16 30 H 0.08 0.55 6.76 -2.38 -0.02 0.53 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.57 6.06 -2.39 -0.01 0.55 16 33 H 0.07 0.54 7.98 -2.39 -0.02 0.52 16 34 H 0.10 0.88 7.74 -2.38 -0.02 0.86 16 35 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.43 5.65 8.37 -92.71 -0.78 4.87 16 37 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 38 H 0.15 4.63 8.06 -2.91 -0.02 4.61 16 39 H 0.28 15.95 8.31 -92.70 -0.77 15.18 16 40 H 0.10 5.57 5.63 -2.91 -0.02 5.55 16 41 H 0.12 5.04 6.23 -2.91 -0.02 5.02 16 42 H 0.05 1.18 8.12 -2.39 -0.02 1.16 16 43 H 0.06 1.36 7.89 -2.39 -0.02 1.34 16 44 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -75.99 362.94 5.18 -70.81 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.24 Total: 20.82 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 4.52 Total: -32.51 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -1.30 Total: -72.74 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.24 Total: -34.20 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.96 Total: 47.83 kcal Total: -75.99 5.18 -70.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332449006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.800 kcal (2) G-P(sol) polarization free energy of solvation -75.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds