Wall clock time and date at job start Tue Mar 31 2020 12:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39877 * 125.89624 * 2 1 4 4 C 1.35319 * 107.91756 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.12443 * 179.97438 * 4 3 2 6 6 F 1.39901 * 109.46719 * 120.00673 * 5 4 3 7 7 F 1.39902 * 109.47452 * 240.00239 * 5 4 3 8 8 N 1.34945 * 107.74770 * 0.02562 * 4 3 2 9 9 C 1.46500 * 126.03821 * 180.02562 * 8 4 3 10 10 C 1.50696 * 109.47396 * 269.99730 * 9 8 4 11 11 O 1.21279 * 119.99895 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00228 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00013 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46827 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47545 * 299.99915 * 14 13 12 16 16 C 1.53004 * 109.47030 * 60.00658 * 14 13 12 17 17 C 1.50705 * 109.46914 * 180.02562 * 14 13 12 18 18 H 1.07996 * 119.99747 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00006 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00111 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00014 * 180.02562 * 19 17 14 22 22 H 1.48508 * 109.47164 * 59.99586 * 21 19 17 23 23 H 1.48500 * 109.47252 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47280 * 299.99985 * 21 19 17 25 25 N 1.30833 * 125.90276 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47140 * 270.02712 * 1 2 3 27 27 H 1.09000 * 109.46925 * 30.02758 * 1 2 3 28 28 H 1.08998 * 109.46805 * 150.01901 * 1 2 3 29 29 H 1.07996 * 126.04364 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.47167 * 0.02562 * 5 4 3 31 31 H 1.09003 * 109.46946 * 29.99763 * 9 8 4 32 32 H 1.09006 * 109.46968 * 149.99628 * 9 8 4 33 33 H 0.96998 * 119.99957 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.46771 * 299.99849 * 13 12 10 35 35 H 1.09002 * 109.46816 * 60.00375 * 13 12 10 36 36 H 1.09002 * 109.46786 * 60.00157 * 15 14 13 37 37 H 1.09001 * 109.47401 * 179.97438 * 15 14 13 38 38 H 1.08997 * 109.47124 * 300.00670 * 15 14 13 39 39 H 1.08995 * 109.47480 * 59.99815 * 16 14 13 40 40 H 1.09001 * 109.47169 * 179.97438 * 16 14 13 41 41 H 1.09000 * 109.46642 * 299.99074 * 16 14 13 42 42 H 0.97004 * 119.99684 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5990 0.0002 6 9 5.5992 1.3388 1.1428 7 9 5.5997 1.3375 -1.1417 8 7 3.6088 -0.6340 0.0004 9 6 4.7900 -1.5007 0.0013 10 6 5.1963 -1.7977 -1.4191 11 8 4.5621 -1.3310 -2.3415 12 7 6.2651 -2.5811 -1.6645 13 6 6.6598 -2.8703 -3.0454 14 6 7.8942 -3.7743 -3.0443 15 6 9.0434 -3.0674 -2.3228 16 6 7.5671 -5.0832 -2.3227 17 6 8.3006 -4.0712 -4.4648 18 1 7.7352 -3.6563 -5.2861 19 6 9.3941 -4.8726 -4.7158 20 7 10.0829 -5.3774 -3.7156 21 14 9.8982 -5.2401 -6.4765 22 1 10.2166 -3.9693 -7.1758 23 1 11.0962 -6.1176 -6.4755 24 1 8.7829 -5.9251 -7.1781 25 7 2.2742 -1.0598 -0.0005 26 1 -0.3633 0.0005 1.0276 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3633 -0.8902 -0.5135 29 1 1.9923 2.1599 0.0004 30 1 4.5268 2.6445 -0.0001 31 1 5.6089 -0.9981 0.5160 32 1 4.5559 -2.4332 0.5149 33 1 6.7726 -2.9541 -0.9268 34 1 5.8409 -3.3735 -3.5595 35 1 6.8933 -1.9378 -3.5594 36 1 8.7497 -2.8523 -1.2954 37 1 9.9227 -3.7117 -2.3217 38 1 9.2764 -2.1350 -2.8369 39 1 6.7485 -5.5868 -2.8367 40 1 8.4464 -5.7274 -2.3223 41 1 7.2735 -4.8680 -1.2952 42 1 10.8524 -5.9409 -3.8923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417552119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:22 Heat of formation + Delta-G solvation = -65.385115 kcal Electronic energy + Delta-G solvation = -26943.768456 eV Core-core repulsion = 22789.388125 eV Total energy + Delta-G solvation = -4154.380332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.29027 -47.26569 -41.51815 -39.27460 -36.45039 -34.09013 -33.37777 -31.76898 -30.97946 -29.80297 -26.80435 -26.31295 -25.76095 -25.44599 -24.43686 -21.22477 -20.56960 -19.89043 -18.87821 -17.66728 -17.61471 -17.44450 -17.20662 -15.91296 -15.82540 -15.28454 -15.01515 -14.86473 -14.47459 -14.15516 -13.86202 -13.62934 -13.55130 -13.45364 -13.22175 -12.94674 -12.90561 -12.69271 -12.57391 -12.22824 -12.14902 -11.63857 -11.39894 -11.22121 -10.86907 -10.75255 -10.73726 -10.41859 -10.23874 -9.90719 -9.67244 -9.49789 -9.34287 -8.85233 -8.72536 -8.53031 -8.36723 -6.04368 -4.14645 1.38916 2.06977 2.48251 2.82524 3.22562 3.29080 3.33297 3.36734 3.59234 3.79309 4.18587 4.34769 4.38289 4.67484 4.78679 4.90302 4.93572 5.00790 5.22448 5.27513 5.40434 5.46841 5.62547 5.81828 6.15983 6.28021 6.41185 6.45933 6.56653 6.71125 6.78266 6.88590 6.93488 6.98307 7.31419 7.46079 7.52371 7.66650 7.89758 7.97929 8.10492 8.34751 8.52728 8.85557 9.51313 10.97062 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.003093 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.567509 B = 9050.416523 C = 9494.212142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.067 3.933 3 C -0.227 4.227 4 C 0.013 3.987 5 C 0.336 3.664 6 F -0.197 7.197 7 F -0.184 7.184 8 N -0.327 5.327 9 C 0.103 3.897 10 C 0.491 3.509 11 O -0.528 6.528 12 N -0.711 5.711 13 C 0.134 3.866 14 C 0.057 3.943 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.508 4.508 18 H 0.057 0.943 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 N -0.261 5.261 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.156 0.844 30 H 0.139 0.861 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.399 0.601 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.006 0.994 37 H 0.086 0.914 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.086 0.914 41 H 0.006 0.994 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.554 12.719 12.479 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 C -0.257 4.257 4 C -0.116 4.116 5 C 0.280 3.720 6 F -0.178 7.178 7 F -0.165 7.165 8 N -0.108 5.108 9 C -0.022 4.022 10 C 0.273 3.727 11 O -0.404 6.404 12 N -0.362 5.362 13 C 0.012 3.988 14 C 0.056 3.944 15 C -0.189 4.189 16 C -0.189 4.189 17 C -0.546 4.546 18 H 0.075 0.925 19 C -0.134 4.134 20 N -0.525 5.525 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 N -0.084 5.084 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.173 0.827 30 H 0.156 0.844 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.234 0.766 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.025 0.975 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.105 0.895 41 H 0.025 0.975 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.621 11.542 11.818 20.789 hybrid contribution 0.825 0.343 -0.648 1.104 sum -11.796 11.884 11.170 20.128 Atomic orbital electron populations 1.20178 0.86104 1.03630 1.02971 1.22335 0.97185 0.90284 1.00021 1.21075 0.89815 1.00387 1.14390 1.21445 0.96802 0.85807 1.07497 1.20032 0.81024 0.99059 0.71879 1.93027 1.77735 1.95845 1.51194 1.93136 1.77153 1.95752 1.50442 1.47824 1.05131 1.03009 1.54824 1.21737 0.85442 0.97236 0.97788 1.20443 0.81744 0.80193 0.90325 1.90736 1.53170 1.51286 1.45250 1.46218 1.29122 1.49558 1.11319 1.21769 0.98472 0.99508 0.79055 1.18356 0.89011 0.90796 0.96217 1.21837 1.02470 0.99679 0.94894 1.21839 1.01788 1.00381 0.94888 1.20940 1.12490 1.30350 0.90856 0.92485 1.24871 0.96049 0.95428 0.97089 1.69791 1.18965 1.33554 1.30146 0.86621 0.77934 0.78295 0.84949 1.20253 1.21291 1.20258 1.77400 0.85658 1.22600 1.22785 0.90429 0.90255 0.90674 0.82667 0.84385 0.86068 0.85439 0.76583 0.92618 0.92546 0.97529 0.89515 0.95368 0.95409 0.89503 0.97522 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.45 36.01 0.38 -0.19 16 2 C 0.07 0.83 7.22 -82.40 -0.59 0.23 16 3 C -0.23 -2.49 10.63 -40.01 -0.43 -2.92 16 4 C 0.01 0.16 6.37 -82.27 -0.52 -0.36 16 5 C 0.34 3.54 5.30 36.00 0.19 3.74 16 6 F -0.20 -2.15 16.39 2.25 0.04 -2.11 16 7 F -0.18 -2.63 17.30 2.25 0.04 -2.60 16 8 N -0.33 -4.81 3.10 -58.31 -0.18 -4.99 16 9 C 0.10 1.40 6.70 -5.20 -0.03 1.36 16 10 C 0.49 8.65 7.90 -10.99 -0.09 8.57 16 11 O -0.53 -11.51 16.43 5.56 0.09 -11.42 16 12 N -0.71 -12.55 4.96 -60.29 -0.30 -12.85 16 13 C 0.13 2.87 4.50 -4.04 -0.02 2.85 16 14 C 0.06 1.31 0.50 -155.66 -0.08 1.24 16 15 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 16 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 17 C -0.51 -13.35 8.01 -34.44 -0.28 -13.62 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 20 N -0.89 -23.55 9.35 55.43 0.52 -23.03 16 21 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 N -0.26 -3.99 12.57 33.67 0.42 -3.57 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.14 0.82 8.11 -51.93 -0.42 0.40 16 31 H 0.12 1.36 6.97 -51.93 -0.36 1.00 16 32 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.40 6.16 6.16 -40.82 -0.25 5.90 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 37 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 42 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -32.65 356.19 -5.71 -38.36 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.72 Total: 3.79 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.96 Total: -2.71 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.46 Total: -44.44 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.08 Total: -4.71 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.65 -5.71 -38.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417552119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.021 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds