Wall clock time and date at job start Tue Mar 31 2020 12:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39877 * 125.89624 * 2 1 4 4 C 1.35319 * 107.91756 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.12443 * 179.97438 * 4 3 2 6 6 F 1.39901 * 109.46719 * 120.00673 * 5 4 3 7 7 F 1.39902 * 109.47452 * 240.00239 * 5 4 3 8 8 N 1.34945 * 107.74770 * 0.02562 * 4 3 2 9 9 C 1.46500 * 126.03821 * 180.02562 * 8 4 3 10 10 C 1.50696 * 109.47396 * 269.99730 * 9 8 4 11 11 O 1.21279 * 119.99895 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00228 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00013 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46827 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47545 * 299.99915 * 14 13 12 16 16 C 1.53004 * 109.47030 * 60.00658 * 14 13 12 17 17 C 1.50705 * 109.46914 * 180.02562 * 14 13 12 18 18 H 1.07996 * 119.99747 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00006 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00111 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00014 * 180.02562 * 19 17 14 22 22 H 1.48508 * 109.47164 * 59.99586 * 21 19 17 23 23 H 1.48500 * 109.47252 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47280 * 299.99985 * 21 19 17 25 25 N 1.30833 * 125.90276 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47140 * 270.02712 * 1 2 3 27 27 H 1.09000 * 109.46925 * 30.02758 * 1 2 3 28 28 H 1.08998 * 109.46805 * 150.01901 * 1 2 3 29 29 H 1.07996 * 126.04364 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.47167 * 0.02562 * 5 4 3 31 31 H 1.09003 * 109.46946 * 29.99763 * 9 8 4 32 32 H 1.09006 * 109.46968 * 149.99628 * 9 8 4 33 33 H 0.96998 * 119.99957 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.46771 * 299.99849 * 13 12 10 35 35 H 1.09002 * 109.46816 * 60.00375 * 13 12 10 36 36 H 1.09002 * 109.46786 * 60.00157 * 15 14 13 37 37 H 1.09001 * 109.47401 * 179.97438 * 15 14 13 38 38 H 1.08997 * 109.47124 * 300.00670 * 15 14 13 39 39 H 1.08995 * 109.47480 * 59.99815 * 16 14 13 40 40 H 1.09001 * 109.47169 * 179.97438 * 16 14 13 41 41 H 1.09000 * 109.46642 * 299.99074 * 16 14 13 42 42 H 0.97004 * 119.99684 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5990 0.0002 6 9 5.5992 1.3388 1.1428 7 9 5.5997 1.3375 -1.1417 8 7 3.6088 -0.6340 0.0004 9 6 4.7900 -1.5007 0.0013 10 6 5.1963 -1.7977 -1.4191 11 8 4.5621 -1.3310 -2.3415 12 7 6.2651 -2.5811 -1.6645 13 6 6.6598 -2.8703 -3.0454 14 6 7.8942 -3.7743 -3.0443 15 6 9.0434 -3.0674 -2.3228 16 6 7.5671 -5.0832 -2.3227 17 6 8.3006 -4.0712 -4.4648 18 1 7.7352 -3.6563 -5.2861 19 6 9.3941 -4.8726 -4.7158 20 7 10.0829 -5.3774 -3.7156 21 14 9.8982 -5.2401 -6.4765 22 1 10.2166 -3.9693 -7.1758 23 1 11.0962 -6.1176 -6.4755 24 1 8.7829 -5.9251 -7.1781 25 7 2.2742 -1.0598 -0.0005 26 1 -0.3633 0.0005 1.0276 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3633 -0.8902 -0.5135 29 1 1.9923 2.1599 0.0004 30 1 4.5268 2.6445 -0.0001 31 1 5.6089 -0.9981 0.5160 32 1 4.5559 -2.4332 0.5149 33 1 6.7726 -2.9541 -0.9268 34 1 5.8409 -3.3735 -3.5595 35 1 6.8933 -1.9378 -3.5594 36 1 8.7497 -2.8523 -1.2954 37 1 9.9227 -3.7117 -2.3217 38 1 9.2764 -2.1350 -2.8369 39 1 6.7485 -5.5868 -2.8367 40 1 8.4464 -5.7274 -2.3223 41 1 7.2735 -4.8680 -1.2952 42 1 10.8524 -5.9409 -3.8923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417552119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:21 Heat of formation + Delta-G solvation = -86.319597 kcal Electronic energy + Delta-G solvation = -26944.676244 eV Core-core repulsion = 22789.388125 eV Total energy + Delta-G solvation = -4155.288119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.14968 -48.15085 -42.44607 -40.73967 -38.20854 -35.12651 -35.04295 -32.94879 -32.50849 -30.74081 -27.98153 -27.59301 -27.34292 -27.16707 -25.95746 -22.29749 -21.74789 -20.88956 -20.64314 -18.92467 -18.55325 -18.32519 -18.22596 -17.73800 -16.94874 -16.67755 -16.59284 -16.26139 -15.78541 -15.09606 -14.99833 -14.91245 -14.71910 -14.50870 -14.49100 -14.35711 -14.05074 -13.81554 -13.49293 -13.38529 -13.28654 -13.13081 -13.11683 -12.69788 -12.65598 -12.41942 -12.28128 -12.16058 -11.62916 -11.52409 -11.41023 -11.15287 -10.75071 -10.43212 -10.42610 -10.07387 -9.70220 -8.05105 -6.21151 0.45063 1.15651 1.42174 1.43316 1.44964 1.50036 1.64203 2.19253 2.43794 2.47694 3.06127 3.18471 3.35590 3.55152 3.66903 3.87096 3.91760 3.96947 4.24337 4.37056 4.44820 4.50042 4.66917 4.71734 4.86583 4.92976 4.99704 5.02117 5.06379 5.11642 5.15864 5.28009 5.49952 5.61296 5.64256 5.64385 5.68887 6.12370 6.17764 6.40183 6.48784 6.55627 6.82235 7.12767 7.46627 8.93644 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.003093 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.567509 B = 9050.416523 C = 9494.212142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.060 3.940 3 C -0.220 4.220 4 C -0.007 4.007 5 C 0.332 3.668 6 F -0.200 7.200 7 F -0.210 7.210 8 N -0.349 5.349 9 C 0.111 3.889 10 C 0.491 3.509 11 O -0.573 6.573 12 N -0.703 5.703 13 C 0.152 3.848 14 C 0.053 3.947 15 C -0.121 4.121 16 C -0.122 4.122 17 C -0.533 4.533 18 H 0.042 0.958 19 C 0.030 3.970 20 N -0.898 5.898 21 Si 0.945 3.055 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.278 1.278 25 N -0.309 5.309 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.196 0.804 30 H 0.191 0.809 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.412 0.588 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.443 14.144 13.981 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C -0.249 4.249 4 C -0.134 4.134 5 C 0.277 3.723 6 F -0.181 7.181 7 F -0.191 7.191 8 N -0.131 5.131 9 C -0.014 4.014 10 C 0.276 3.724 11 O -0.452 6.452 12 N -0.355 5.355 13 C 0.028 3.972 14 C 0.053 3.947 15 C -0.179 4.179 16 C -0.179 4.179 17 C -0.572 4.572 18 H 0.061 0.939 19 C -0.170 4.170 20 N -0.536 5.536 21 Si 0.771 3.229 22 H -0.203 1.203 23 H -0.206 1.206 24 H -0.203 1.203 25 N -0.132 5.132 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.213 0.787 30 H 0.207 0.793 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.250 0.750 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.502 12.965 13.357 22.996 hybrid contribution 1.016 -0.055 -1.099 1.498 sum -12.486 12.910 12.258 21.744 Atomic orbital electron populations 1.20343 0.83540 1.04374 1.04438 1.23111 0.98898 0.90193 0.98385 1.21617 0.88900 1.01929 1.12437 1.22049 0.98393 0.85473 1.07485 1.20639 0.79840 1.01077 0.70705 1.93014 1.77814 1.96033 1.51228 1.93084 1.77865 1.96063 1.52082 1.47947 1.04984 1.03858 1.56299 1.21745 0.86321 0.98872 0.94497 1.21192 0.80580 0.78748 0.91892 1.90708 1.54457 1.52831 1.47232 1.46005 1.29607 1.49843 1.10092 1.21275 0.97070 0.97896 0.80952 1.18344 0.89841 0.91582 0.94973 1.21679 1.01168 0.98427 0.96629 1.21684 1.00323 0.99290 0.96641 1.21244 1.12861 1.30811 0.92276 0.93929 1.25433 0.96102 0.95386 1.00073 1.69891 1.18968 1.33551 1.31213 0.85828 0.77617 0.78002 0.81436 1.20272 1.20611 1.20322 1.77332 0.86458 1.24568 1.24799 0.88493 0.87858 0.91544 0.78717 0.79257 0.83768 0.83206 0.75018 0.94586 0.94479 0.94212 0.91725 0.96383 0.96458 0.91720 0.94178 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.45 71.24 0.74 -0.21 16 2 C 0.06 1.37 7.22 43.10 0.31 1.68 16 3 C -0.22 -4.22 10.63 21.99 0.23 -3.98 16 4 C -0.01 -0.16 6.37 41.41 0.26 0.10 16 5 C 0.33 6.22 5.30 71.24 0.38 6.60 16 6 F -0.20 -3.91 16.39 44.97 0.74 -3.17 16 7 F -0.21 -5.79 17.30 44.97 0.78 -5.01 16 8 N -0.35 -9.87 3.10 -338.40 -1.05 -10.92 16 9 C 0.11 2.85 6.70 85.63 0.57 3.42 16 10 C 0.49 17.14 7.90 87.66 0.69 17.84 16 11 O -0.57 -25.39 16.43 -3.03 -0.05 -25.44 16 12 N -0.70 -24.37 4.96 -463.06 -2.30 -26.66 16 13 C 0.15 6.60 4.50 86.38 0.39 6.99 16 14 C 0.05 2.48 0.50 -52.93 -0.03 2.45 16 15 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 16 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 17 C -0.53 -28.59 8.01 25.60 0.21 -28.38 16 18 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 19 C 0.03 1.60 5.15 84.65 0.44 2.03 16 20 N -0.90 -47.91 9.35 21.45 0.20 -47.71 16 21 Si 0.94 42.92 29.54 68.60 2.03 44.94 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 25 N -0.31 -9.19 12.57 -47.38 -0.60 -9.79 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.19 1.50 8.11 -2.39 -0.02 1.48 16 31 H 0.14 2.96 6.97 -2.39 -0.02 2.95 16 32 H 0.15 3.09 8.14 -2.38 -0.02 3.07 16 33 H 0.41 11.93 6.16 -92.71 -0.57 11.36 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 37 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 41 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 42 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -73.06 356.19 5.59 -67.47 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.48 Total: 17.35 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.36 Total: -1.06 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -3.74 Total: -95.09 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.44 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 1.51 Total: -8.18 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -73.06 5.59 -67.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417552119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.849 kcal (2) G-P(sol) polarization free energy of solvation -73.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds