Wall clock time and date at job start Tue Mar 31 2020 12:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38404 * 120.35429 * 2 1 4 4 C 1.39660 * 118.44782 * 180.21712 * 3 2 1 5 5 C 1.48406 * 120.50180 * 179.79965 * 4 3 2 6 6 N 1.34068 * 126.68087 * 359.75050 * 5 4 3 7 7 N 1.28978 * 107.26827 * 180.02562 * 6 5 4 8 8 N 1.28736 * 108.95422 * 359.97438 * 7 6 5 9 9 H 0.96998 * 125.34342 * 180.02562 * 8 7 6 10 10 N 1.28881 * 109.31863 * 359.73309 * 8 7 6 11 11 N 1.33092 * 118.99304 * 359.53064 * 4 3 2 12 12 C 1.32351 * 120.61812 * 0.24835 * 11 4 3 13 13 N 1.38410 * 119.15605 * 180.02562 * 12 11 4 14 14 C 1.46503 * 120.00234 * 359.97438 * 13 12 11 15 15 H 1.09004 * 110.01114 * 325.06588 * 14 13 12 16 16 C 1.53873 * 110.03212 * 86.45536 * 14 13 12 17 17 C 1.54267 * 106.59573 * 119.28966 * 16 14 13 18 18 C 1.54886 * 104.19912 * 23.60966 * 17 16 14 19 19 H 1.09001 * 110.75929 * 80.55712 * 18 17 16 20 20 C 1.50695 * 110.75620 * 203.74643 * 18 17 16 21 21 H 1.07997 * 120.00334 * 118.54105 * 20 18 17 22 22 C 1.37881 * 119.99720 * 298.54247 * 20 18 17 23 23 N 1.31506 * 119.99965 * 0.02562 * 22 20 18 24 24 Si 1.86798 * 119.99890 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47161 * 60.00093 * 24 22 20 26 26 H 1.48504 * 109.47336 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47609 * 300.00132 * 24 22 20 28 28 C 1.54268 * 110.03264 * 203.62665 * 14 13 12 29 29 N 1.32330 * 120.36352 * 179.73870 * 2 1 3 30 30 H 1.08999 * 109.46839 * 270.25711 * 1 2 3 31 31 H 1.08998 * 109.47387 * 30.25649 * 1 2 3 32 32 H 1.09002 * 109.46586 * 150.25713 * 1 2 3 33 33 H 1.08001 * 120.77842 * 0.02562 * 3 2 1 34 34 H 0.97002 * 120.00156 * 180.02562 * 13 12 11 35 35 H 1.09006 * 110.02701 * 238.57249 * 16 14 13 36 36 H 1.09001 * 110.03242 * 0.02562 * 16 14 13 37 37 H 1.09003 * 110.48305 * 142.28918 * 17 16 14 38 38 H 1.08997 * 110.48257 * 264.79388 * 17 16 14 39 39 H 0.97006 * 119.99878 * 180.02562 * 23 22 20 40 40 H 1.08998 * 110.48347 * 335.77810 * 28 14 13 41 41 H 1.08999 * 110.48591 * 98.42669 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2065 1.1943 0.0000 4 6 3.6023 1.1479 -0.0047 5 6 4.3977 2.4008 -0.0093 6 7 3.9191 3.6531 -0.0144 7 7 4.9330 4.4504 -0.0177 8 7 6.0143 3.7518 -0.0145 9 1 6.9150 4.1119 -0.0156 10 7 5.7124 2.4989 -0.0033 11 7 4.2083 -0.0371 0.0006 12 6 3.5012 -1.1558 0.0052 13 7 4.1627 -2.3716 0.0112 14 6 5.6273 -2.4087 0.0118 15 1 6.0216 -1.5816 -0.5785 16 6 6.1560 -2.3259 1.4545 17 6 6.9538 -3.6220 1.7065 18 6 7.3688 -4.0940 0.2909 19 1 8.2425 -3.5442 -0.0591 20 6 7.6338 -5.5774 0.2788 21 1 7.0387 -6.2273 -0.3455 22 6 8.6362 -6.1050 1.0651 23 7 9.3605 -5.3137 1.8257 24 14 8.9643 -7.9439 1.0507 25 1 9.3247 -8.3717 -0.3249 26 1 10.0850 -8.2540 1.9745 27 1 7.7447 -8.6679 1.4907 28 6 6.1221 -3.7523 -0.5625 29 7 2.1760 -1.1418 0.0052 30 1 -0.3633 0.0046 1.0277 31 1 -0.3634 0.8876 -0.5178 32 1 -0.3632 -0.8923 -0.5099 33 1 1.6851 2.1401 0.0004 34 1 3.6566 -3.1991 0.0142 35 1 6.8077 -1.4590 1.5640 36 1 5.3230 -2.2585 2.1542 37 1 7.8353 -3.4154 2.3134 38 1 6.3248 -4.3689 2.1908 39 1 10.0659 -5.6848 2.3786 40 1 5.3581 -4.5211 -0.4468 41 1 6.3967 -3.6408 -1.6114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591902548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:18 Heat of formation + Delta-G solvation = 170.466449 kcal Electronic energy + Delta-G solvation = -25321.160178 eV Core-core repulsion = 21659.989076 eV Total energy + Delta-G solvation = -3661.171103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.70283 -40.96408 -37.85984 -35.13856 -34.86753 -34.34625 -32.85746 -32.22356 -30.81250 -28.62434 -28.13305 -26.82122 -25.43054 -24.77913 -23.91240 -22.59823 -21.83990 -19.63949 -19.42808 -19.17225 -17.88102 -17.39243 -17.05367 -16.24163 -15.70360 -15.37210 -15.04164 -14.66199 -14.61321 -14.19423 -14.16074 -13.31315 -13.29548 -12.67422 -12.59016 -12.47999 -12.33289 -12.03601 -11.74716 -11.56019 -11.38925 -11.16019 -11.05648 -10.97243 -10.79838 -10.59117 -10.20251 -10.16622 -9.99755 -9.73356 -9.50960 -9.21857 -9.14539 -8.79968 -8.36732 -7.84389 -6.00390 -4.03822 0.45405 0.95324 1.21122 1.98163 2.18017 2.89775 3.29963 3.31901 3.36827 3.39323 3.79652 3.91762 4.36128 4.43957 4.66861 4.84177 4.99880 5.20167 5.27205 5.31709 5.33693 5.38685 5.52620 5.68250 5.69741 5.72115 5.87357 6.11838 6.17487 6.35997 6.51157 6.61385 6.70753 6.76247 6.92050 6.95390 7.16185 7.30522 7.38166 7.69852 7.72753 7.88767 7.89746 8.03218 8.42477 8.44279 8.97927 9.60241 11.08589 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.016580 B = 0.003076 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.335614 B = 9101.704873 C =10507.824420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.223 3.777 3 C -0.260 4.260 4 C 0.295 3.705 5 C 0.216 3.784 6 N -0.254 5.254 7 N -0.052 5.052 8 N -0.226 5.226 9 H 0.478 0.522 10 N -0.246 5.246 11 N -0.540 5.540 12 C 0.580 3.420 13 N -0.678 5.678 14 C 0.152 3.848 15 H 0.084 0.916 16 C -0.132 4.132 17 C -0.100 4.100 18 C 0.054 3.946 19 H 0.032 0.968 20 C -0.515 4.515 21 H 0.055 0.945 22 C 0.063 3.937 23 N -0.889 5.889 24 Si 0.890 3.110 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 C -0.122 4.122 29 N -0.567 5.567 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.413 0.587 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.260 0.740 40 H 0.062 0.938 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.811 17.090 -3.284 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.073 3.927 3 C -0.289 4.289 4 C 0.144 3.856 5 C -0.065 4.065 6 N -0.128 5.128 7 N -0.047 5.047 8 N -0.073 5.073 9 H 0.333 0.667 10 N -0.098 5.098 11 N -0.265 5.265 12 C 0.222 3.778 13 N -0.312 5.312 14 C 0.048 3.952 15 H 0.102 0.898 16 C -0.171 4.171 17 C -0.138 4.138 18 C 0.035 3.965 19 H 0.050 0.950 20 C -0.554 4.554 21 H 0.073 0.927 22 C -0.139 4.139 23 N -0.527 5.527 24 Si 0.718 3.282 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.203 1.203 28 C -0.160 4.160 29 N -0.292 5.292 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.169 0.831 34 H 0.251 0.749 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.839 16.780 -3.149 20.776 hybrid contribution 0.303 -0.741 0.160 0.816 sum -11.536 16.039 -2.989 19.982 Atomic orbital electron populations 1.20775 0.87604 1.04035 1.03729 1.21310 0.97070 0.86807 0.87477 1.22110 0.93519 1.00935 1.12374 1.17619 0.88613 0.86801 0.92561 1.23083 0.86650 0.92826 1.03945 1.76063 1.21023 0.98777 1.16968 1.78917 0.88796 1.21796 1.15156 1.47903 1.11962 1.01896 1.45533 0.66732 1.75274 1.16305 1.00035 1.18205 1.67712 1.40187 0.96793 1.21785 1.19186 0.84333 0.86675 0.87560 1.44841 1.07260 1.02863 1.76216 1.21942 0.75769 0.99839 0.97640 0.89758 1.22653 0.99244 1.00323 0.94919 1.22305 0.98164 0.92737 1.00628 1.19530 0.90928 0.95927 0.90141 0.94953 1.21064 1.16909 0.92169 1.25210 0.92702 1.24966 0.95876 0.97610 0.95399 1.69949 1.21147 1.34615 1.26964 0.86704 0.77757 0.85942 0.77834 1.20331 1.21376 1.20326 1.22779 1.00481 0.93448 0.99285 1.67761 1.07769 1.30906 1.22721 0.89583 0.89939 0.89899 0.83086 0.74896 0.92484 0.93443 0.91299 0.93567 0.93037 0.91980 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.21 36.01 0.37 -0.41 16 2 C 0.22 2.65 6.82 -82.31 -0.56 2.08 16 3 C -0.26 -3.09 9.50 -38.99 -0.37 -3.47 16 4 C 0.30 4.25 6.80 -82.60 -0.56 3.69 16 5 C 0.22 2.92 8.06 -156.28 -1.26 1.66 16 6 N -0.25 -3.14 12.30 32.15 0.40 -2.74 16 7 N -0.05 -0.54 13.47 60.35 0.81 0.27 16 8 N -0.23 -2.00 7.90 60.35 0.48 -1.52 16 9 H 0.48 1.88 8.96 -340.35 -3.05 -1.17 16 10 N -0.25 -3.13 12.40 32.17 0.40 -2.73 16 11 N -0.54 -8.88 9.18 -10.46 -0.10 -8.98 16 12 C 0.58 9.42 8.42 -322.93 -2.72 6.70 16 13 N -0.68 -11.06 5.14 -54.73 -0.28 -11.34 16 14 C 0.15 2.76 3.22 -66.81 -0.22 2.54 16 15 H 0.08 1.58 7.53 -51.93 -0.39 1.18 16 16 C -0.13 -2.59 6.59 -25.61 -0.17 -2.76 16 17 C -0.10 -2.31 5.56 -25.07 -0.14 -2.45 16 18 C 0.05 1.29 2.82 -89.78 -0.25 1.04 16 19 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 20 C -0.52 -13.84 8.54 -34.44 -0.29 -14.13 16 21 H 0.05 1.45 7.78 -52.49 -0.41 1.04 16 22 C 0.06 1.73 5.33 -17.82 -0.10 1.64 16 23 N -0.89 -25.22 12.02 55.43 0.67 -24.55 16 24 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 28 C -0.12 -2.41 5.94 -25.07 -0.15 -2.56 16 29 N -0.57 -8.31 10.38 -10.21 -0.11 -8.41 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.15 1.43 7.96 -52.49 -0.42 1.01 16 34 H 0.41 6.26 8.45 -40.82 -0.35 5.91 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 37 H 0.07 1.74 7.37 -51.93 -0.38 1.36 16 38 H 0.05 1.11 8.04 -51.93 -0.42 0.69 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.06 1.20 7.63 -51.93 -0.40 0.81 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -31.78 350.24 -11.79 -43.57 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.89 Total: 1.51 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -6.42 Total: -6.42 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 2.27 Total: -60.01 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.78 -11.79 -43.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591902548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.037 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds