Wall clock time and date at job start Tue Mar 31 2020 12:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38404 * 120.35429 * 2 1 4 4 C 1.39660 * 118.44782 * 180.21712 * 3 2 1 5 5 C 1.48406 * 120.50180 * 179.79965 * 4 3 2 6 6 N 1.34068 * 126.68087 * 359.75050 * 5 4 3 7 7 N 1.28978 * 107.26827 * 180.02562 * 6 5 4 8 8 N 1.28736 * 108.95422 * 359.97438 * 7 6 5 9 9 H 0.96998 * 125.34342 * 180.02562 * 8 7 6 10 10 N 1.28881 * 109.31863 * 359.73309 * 8 7 6 11 11 N 1.33092 * 118.99304 * 359.53064 * 4 3 2 12 12 C 1.32351 * 120.61812 * 0.24835 * 11 4 3 13 13 N 1.38410 * 119.15605 * 180.02562 * 12 11 4 14 14 C 1.46503 * 120.00234 * 359.97438 * 13 12 11 15 15 H 1.09004 * 110.01114 * 325.06588 * 14 13 12 16 16 C 1.53873 * 110.03212 * 86.45536 * 14 13 12 17 17 C 1.54267 * 106.59573 * 119.28966 * 16 14 13 18 18 C 1.54886 * 104.19912 * 23.60966 * 17 16 14 19 19 H 1.09001 * 110.75929 * 80.55712 * 18 17 16 20 20 C 1.50695 * 110.75620 * 203.74643 * 18 17 16 21 21 H 1.07997 * 120.00334 * 118.54105 * 20 18 17 22 22 C 1.37881 * 119.99720 * 298.54247 * 20 18 17 23 23 N 1.31506 * 119.99965 * 0.02562 * 22 20 18 24 24 Si 1.86798 * 119.99890 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47161 * 60.00093 * 24 22 20 26 26 H 1.48504 * 109.47336 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47609 * 300.00132 * 24 22 20 28 28 C 1.54268 * 110.03264 * 203.62665 * 14 13 12 29 29 N 1.32330 * 120.36352 * 179.73870 * 2 1 3 30 30 H 1.08999 * 109.46839 * 270.25711 * 1 2 3 31 31 H 1.08998 * 109.47387 * 30.25649 * 1 2 3 32 32 H 1.09002 * 109.46586 * 150.25713 * 1 2 3 33 33 H 1.08001 * 120.77842 * 0.02562 * 3 2 1 34 34 H 0.97002 * 120.00156 * 180.02562 * 13 12 11 35 35 H 1.09006 * 110.02701 * 238.57249 * 16 14 13 36 36 H 1.09001 * 110.03242 * 0.02562 * 16 14 13 37 37 H 1.09003 * 110.48305 * 142.28918 * 17 16 14 38 38 H 1.08997 * 110.48257 * 264.79388 * 17 16 14 39 39 H 0.97006 * 119.99878 * 180.02562 * 23 22 20 40 40 H 1.08998 * 110.48347 * 335.77810 * 28 14 13 41 41 H 1.08999 * 110.48591 * 98.42669 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2065 1.1943 0.0000 4 6 3.6023 1.1479 -0.0047 5 6 4.3977 2.4008 -0.0093 6 7 3.9191 3.6531 -0.0144 7 7 4.9330 4.4504 -0.0177 8 7 6.0143 3.7518 -0.0145 9 1 6.9150 4.1119 -0.0156 10 7 5.7124 2.4989 -0.0033 11 7 4.2083 -0.0371 0.0006 12 6 3.5012 -1.1558 0.0052 13 7 4.1627 -2.3716 0.0112 14 6 5.6273 -2.4087 0.0118 15 1 6.0216 -1.5816 -0.5785 16 6 6.1560 -2.3259 1.4545 17 6 6.9538 -3.6220 1.7065 18 6 7.3688 -4.0940 0.2909 19 1 8.2425 -3.5442 -0.0591 20 6 7.6338 -5.5774 0.2788 21 1 7.0387 -6.2273 -0.3455 22 6 8.6362 -6.1050 1.0651 23 7 9.3605 -5.3137 1.8257 24 14 8.9643 -7.9439 1.0507 25 1 9.3247 -8.3717 -0.3249 26 1 10.0850 -8.2540 1.9745 27 1 7.7447 -8.6679 1.4907 28 6 6.1221 -3.7523 -0.5625 29 7 2.1760 -1.1418 0.0052 30 1 -0.3633 0.0046 1.0277 31 1 -0.3634 0.8876 -0.5178 32 1 -0.3632 -0.8923 -0.5099 33 1 1.6851 2.1401 0.0004 34 1 3.6566 -3.1991 0.0142 35 1 6.8077 -1.4590 1.5640 36 1 5.3230 -2.2585 2.1542 37 1 7.8353 -3.4154 2.3134 38 1 6.3248 -4.3689 2.1908 39 1 10.0659 -5.6848 2.3786 40 1 5.3581 -4.5211 -0.4468 41 1 6.3967 -3.6408 -1.6114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591902548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:18 Heat of formation + Delta-G solvation = 151.040951 kcal Electronic energy + Delta-G solvation = -25322.002531 eV Core-core repulsion = 21659.989076 eV Total energy + Delta-G solvation = -3662.013456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.58670 -42.03000 -39.42455 -36.35350 -35.96392 -35.29827 -34.38115 -33.55291 -32.03429 -29.95031 -29.45025 -28.46016 -26.36235 -25.85252 -25.61193 -23.71671 -22.86147 -21.24865 -20.86368 -20.31331 -19.02488 -18.55348 -18.27379 -17.85746 -16.76482 -16.61703 -16.51237 -16.08717 -15.98907 -15.75965 -15.11011 -14.51542 -14.19361 -14.03959 -14.01979 -13.59755 -13.48903 -13.19389 -13.05335 -12.97589 -12.76384 -12.50052 -12.43306 -12.31454 -12.30641 -12.11842 -11.85153 -11.65050 -11.37231 -11.14773 -11.07180 -10.94518 -10.80252 -10.44288 -10.24143 -9.04553 -8.09210 -6.19402 -0.54337 0.08083 0.20496 1.18012 1.26506 1.43541 1.44344 1.51752 1.80351 2.29160 2.45470 2.85546 2.87353 3.21392 3.41778 3.76754 3.77068 3.95409 4.04316 4.06357 4.22301 4.31153 4.39589 4.53473 4.70085 4.81518 4.86211 4.90172 4.96657 5.02402 5.07946 5.11086 5.15707 5.33745 5.41015 5.50529 5.52422 5.67015 5.85006 5.95093 6.00688 6.08084 6.38676 6.52934 6.90454 6.99300 7.31605 7.48035 8.98830 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.016580 B = 0.003076 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.335614 B = 9101.704873 C =10507.824420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.219 3.781 3 C -0.244 4.244 4 C 0.275 3.725 5 C 0.204 3.796 6 N -0.262 5.262 7 N -0.046 5.046 8 N -0.199 5.199 9 H 0.496 0.504 10 N -0.269 5.269 11 N -0.568 5.568 12 C 0.566 3.434 13 N -0.681 5.681 14 C 0.173 3.827 15 H 0.080 0.920 16 C -0.117 4.117 17 C -0.089 4.089 18 C 0.044 3.956 19 H 0.004 0.996 20 C -0.531 4.531 21 H 0.057 0.943 22 C 0.012 3.988 23 N -0.919 5.919 24 Si 0.952 3.048 25 H -0.271 1.271 26 H -0.287 1.287 27 H -0.271 1.271 28 C -0.109 4.109 29 N -0.577 5.577 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.178 0.822 34 H 0.418 0.582 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.039 0.961 38 H 0.032 0.968 39 H 0.259 0.741 40 H 0.068 0.932 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.856 17.962 -3.818 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.071 3.929 3 C -0.272 4.272 4 C 0.126 3.874 5 C -0.077 4.077 6 N -0.136 5.136 7 N -0.041 5.041 8 N -0.050 5.050 9 H 0.356 0.644 10 N -0.122 5.122 11 N -0.293 5.293 12 C 0.208 3.792 13 N -0.317 5.317 14 C 0.068 3.932 15 H 0.098 0.902 16 C -0.157 4.157 17 C -0.127 4.127 18 C 0.025 3.975 19 H 0.022 0.978 20 C -0.569 4.569 21 H 0.075 0.925 22 C -0.186 4.186 23 N -0.558 5.558 24 Si 0.778 3.222 25 H -0.196 1.196 26 H -0.213 1.213 27 H -0.196 1.196 28 C -0.147 4.147 29 N -0.302 5.302 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.196 0.804 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.907 17.708 -3.696 22.818 hybrid contribution 0.912 -0.857 0.323 1.292 sum -12.995 16.851 -3.373 21.546 Atomic orbital electron populations 1.20939 0.84197 1.05499 1.05107 1.22105 0.99051 0.85968 0.85822 1.22454 0.92611 1.02160 1.10001 1.17954 0.89860 0.86517 0.93108 1.23071 0.86888 0.92998 1.04736 1.76043 1.21621 0.98349 1.17586 1.78854 0.88947 1.21470 1.14803 1.47913 1.12684 1.00796 1.43623 0.64448 1.75221 1.16432 1.01592 1.18956 1.67639 1.41156 0.97519 1.22991 1.19252 0.85059 0.86431 0.88433 1.44520 1.06171 1.03483 1.77539 1.21464 0.77234 0.98493 0.95998 0.90155 1.22483 0.98772 0.98086 0.96309 1.22068 0.97121 0.94129 0.99421 1.19495 0.91847 0.94529 0.91622 0.97810 1.21460 1.16911 0.93594 1.24981 0.92512 1.25751 0.95834 1.01886 0.95178 1.70087 1.21641 1.36349 1.27691 0.85704 0.77664 0.80848 0.77978 1.19618 1.21292 1.19605 1.22579 0.98594 0.94545 0.98968 1.67828 1.07021 1.32294 1.23037 0.88001 0.87165 0.89745 0.80439 0.74363 0.92666 0.92949 0.94253 0.94887 0.93195 0.91321 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.21 71.24 0.73 -0.43 16 2 C 0.22 4.68 6.82 42.53 0.29 4.97 16 3 C -0.24 -5.25 9.50 22.65 0.22 -5.04 16 4 C 0.27 7.62 6.80 42.01 0.29 7.90 16 5 C 0.20 5.31 8.06 137.35 1.11 6.41 16 6 N -0.26 -6.06 12.30 -52.20 -0.64 -6.70 16 7 N -0.05 -0.89 13.47 37.02 0.50 -0.39 16 8 N -0.20 -3.23 7.90 37.02 0.29 -2.94 16 9 H 0.50 3.14 8.96 -347.53 -3.12 0.03 16 10 N -0.27 -6.64 12.40 -52.14 -0.65 -7.28 16 11 N -0.57 -18.42 9.18 -187.00 -1.72 -20.14 16 12 C 0.57 18.00 8.42 261.53 2.20 20.20 16 13 N -0.68 -21.93 5.14 -327.05 -1.68 -23.61 16 14 C 0.17 6.29 3.22 45.72 0.15 6.44 16 15 H 0.08 3.02 7.53 -2.38 -0.02 3.00 16 16 C -0.12 -4.66 6.59 31.32 0.21 -4.45 16 17 C -0.09 -4.25 5.56 31.67 0.18 -4.07 16 18 C 0.04 2.18 2.82 -10.25 -0.03 2.15 16 19 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 20 C -0.53 -28.96 8.54 25.60 0.22 -28.74 16 21 H 0.06 3.00 7.78 -2.91 -0.02 2.97 16 22 C 0.01 0.68 5.33 84.66 0.45 1.14 16 23 N -0.92 -53.52 12.02 21.45 0.26 -53.26 16 24 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 C -0.11 -4.32 5.94 31.67 0.19 -4.13 16 29 N -0.58 -16.07 10.38 -186.22 -1.93 -18.01 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 0.69 8.09 -2.39 -0.02 0.67 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.18 2.78 7.96 -2.91 -0.02 2.75 16 34 H 0.42 12.39 8.45 -92.71 -0.78 11.61 16 35 H 0.05 2.19 8.14 -2.38 -0.02 2.18 16 36 H 0.05 2.02 7.92 -2.39 -0.02 2.00 16 37 H 0.04 2.07 7.37 -2.39 -0.02 2.06 16 38 H 0.03 1.62 8.04 -2.39 -0.02 1.60 16 39 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 40 H 0.07 2.63 7.63 -2.39 -0.02 2.61 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -69.58 350.24 -0.16 -69.74 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -2.80 Total: 14.66 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 6.19 Total: 2.36 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -5.57 Total: -132.33 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -69.58 -0.16 -69.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591902548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.784 kcal (2) G-P(sol) polarization free energy of solvation -69.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds