Wall clock time and date at job start Tue Mar 31 2020 12:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38400 * 120.36146 * 2 1 4 4 C 1.39662 * 118.45775 * 180.21895 * 3 2 1 5 5 C 1.48397 * 120.50697 * 179.80028 * 4 3 2 6 6 N 1.34072 * 126.67871 * 359.70065 * 5 4 3 7 7 N 1.28978 * 107.26560 * 180.02562 * 6 5 4 8 8 N 1.28728 * 108.95607 * 359.97438 * 7 6 5 9 9 H 0.97000 * 125.34066 * 180.02562 * 8 7 6 10 10 N 1.28872 * 109.32023 * 0.02562 * 8 7 6 11 11 N 1.33088 * 118.98470 * 359.52589 * 4 3 2 12 12 C 1.32353 * 120.62243 * 0.25273 * 11 4 3 13 13 N 1.38411 * 119.15493 * 179.97438 * 12 11 4 14 14 C 1.46846 * 111.00038 * 235.79082 * 13 12 11 15 15 C 1.53040 * 109.52416 * 185.84192 * 14 13 12 16 16 C 1.53121 * 109.27643 * 300.81871 * 15 14 13 17 17 C 1.50705 * 109.52047 * 177.56075 * 16 15 14 18 18 H 1.08001 * 119.99722 * 275.45112 * 17 16 15 19 19 C 1.37877 * 120.00028 * 95.45259 * 17 16 15 20 20 N 1.31515 * 120.00006 * 185.93586 * 19 17 16 21 21 Si 1.86793 * 120.00016 * 5.94171 * 19 17 16 22 22 H 1.48499 * 109.47365 * 84.77391 * 21 19 17 23 23 H 1.48507 * 109.47225 * 204.77950 * 21 19 17 24 24 H 1.48507 * 109.47169 * 324.77523 * 21 19 17 25 25 C 1.53118 * 109.16137 * 57.65772 * 16 15 14 26 26 C 1.46848 * 111.00151 * 359.97438 * 13 12 11 27 27 N 1.32333 * 120.36039 * 179.74186 * 2 1 3 28 28 H 1.08997 * 109.47297 * 270.25762 * 1 2 3 29 29 H 1.09000 * 109.47090 * 30.25490 * 1 2 3 30 30 H 1.09003 * 109.46889 * 150.25602 * 1 2 3 31 31 H 1.08006 * 120.77313 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.46469 * 305.85259 * 14 13 12 33 33 H 1.08998 * 109.46538 * 65.82575 * 14 13 12 34 34 H 1.09008 * 109.50500 * 180.87857 * 15 14 13 35 35 H 1.09003 * 109.50368 * 60.76007 * 15 14 13 36 36 H 1.09000 * 109.52397 * 297.74604 * 16 15 14 37 37 H 0.96997 * 119.99938 * 179.97438 * 20 19 17 38 38 H 1.08994 * 109.50426 * 182.40682 * 25 16 15 39 39 H 1.08996 * 109.53859 * 62.30089 * 25 16 15 40 40 H 1.08989 * 109.46310 * 294.17461 * 26 13 12 41 41 H 1.08998 * 109.45986 * 54.15053 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1942 0.0000 4 6 3.6024 1.1478 -0.0047 5 6 4.3977 2.4006 -0.0094 6 7 3.9192 3.6530 -0.0153 7 7 4.9331 4.4502 -0.0183 8 7 6.0143 3.7516 -0.0140 9 1 6.9150 4.1117 -0.0146 10 7 5.7125 2.4988 -0.0087 11 7 4.2083 -0.0371 0.0007 12 6 3.5011 -1.1559 0.0052 13 7 4.1626 -2.3717 0.0102 14 6 3.7371 -3.2070 -1.1201 15 6 4.3764 -4.5924 -1.0015 16 6 5.9007 -4.4469 -0.9957 17 6 6.5353 -5.8023 -0.8189 18 1 6.6676 -6.2115 0.1718 19 6 6.9468 -6.5200 -1.9219 20 7 7.3925 -7.7489 -1.7780 21 14 6.8715 -5.7467 -3.6206 22 1 8.0998 -4.9457 -3.8548 23 1 6.7742 -6.8155 -4.6471 24 1 5.6805 -4.8642 -3.7104 25 6 6.3139 -3.5335 0.1617 26 6 5.6184 -2.1788 0.0088 27 7 2.1758 -1.1418 0.0051 28 1 -0.3634 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6851 2.1401 -0.0004 32 1 2.6516 -3.3060 -1.1102 33 1 4.0506 -2.7411 -2.0543 34 1 4.0728 -5.2071 -1.8490 35 1 4.0523 -5.0646 -0.0741 36 1 6.2286 -4.0104 -1.9392 37 1 7.6817 -8.2539 -2.5540 38 1 7.3945 -3.3917 0.1454 39 1 6.0209 -3.9887 1.1077 40 1 5.9227 -1.7180 -0.9308 41 1 5.8996 -1.5309 0.8389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605559550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:14 Heat of formation + Delta-G solvation = 186.008267 kcal Electronic energy + Delta-G solvation = -25757.648724 eV Core-core repulsion = 22097.151565 eV Total energy + Delta-G solvation = -3660.497159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.83056 -41.33214 -38.49060 -35.22897 -34.79012 -34.38120 -32.96585 -32.06370 -30.85730 -30.30704 -28.67903 -26.35799 -25.55017 -24.87202 -23.16452 -22.78504 -21.61911 -21.25418 -19.55132 -18.89361 -17.78738 -17.51812 -17.17529 -16.82830 -15.85134 -15.47000 -15.26368 -14.45049 -14.35848 -14.18179 -13.69334 -13.50559 -13.14767 -13.10237 -12.74989 -12.70766 -12.56277 -12.38786 -11.94398 -11.75370 -11.63396 -11.54619 -11.49550 -11.08294 -10.95864 -10.69530 -10.46667 -10.26258 -9.94965 -9.86884 -9.61425 -9.32692 -9.17841 -8.97997 -8.49785 -8.21312 -6.07005 -4.05308 0.28328 0.82496 0.90435 1.85646 2.00788 2.89919 3.27972 3.30987 3.36920 3.37753 3.65727 3.66732 4.29513 4.42109 4.51630 4.70053 4.82297 5.01159 5.12334 5.20187 5.21118 5.33131 5.48131 5.49816 5.62462 5.67652 5.74194 5.89611 5.99656 6.04592 6.10813 6.19065 6.36141 6.43722 6.65991 6.69899 6.79979 6.97174 7.07110 7.29849 7.41338 7.50202 7.76179 7.78258 8.11496 8.54539 8.99578 9.56712 11.06538 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003519 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.056732 B = 7955.740480 C = 9063.149662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.206 3.794 3 C -0.229 4.229 4 C 0.276 3.724 5 C 0.216 3.784 6 N -0.253 5.253 7 N -0.049 5.049 8 N -0.225 5.225 9 H 0.478 0.522 10 N -0.248 5.248 11 N -0.529 5.529 12 C 0.513 3.487 13 N -0.449 5.449 14 C 0.066 3.934 15 C -0.108 4.108 16 C 0.011 3.989 17 C -0.508 4.508 18 H 0.074 0.926 19 C 0.070 3.930 20 N -0.901 5.901 21 Si 0.876 3.124 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.266 1.266 25 C -0.104 4.104 26 C 0.068 3.932 27 N -0.522 5.522 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.155 0.845 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 23.183 2.570 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.057 3.943 3 C -0.255 4.255 4 C 0.126 3.874 5 C -0.065 4.065 6 N -0.128 5.128 7 N -0.044 5.044 8 N -0.072 5.072 9 H 0.333 0.667 10 N -0.100 5.100 11 N -0.251 5.251 12 C 0.158 3.842 13 N -0.167 5.167 14 C -0.060 4.060 15 C -0.147 4.147 16 C -0.008 4.008 17 C -0.545 4.545 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.191 1.191 25 C -0.142 4.142 26 C -0.058 4.058 27 N -0.242 5.242 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.173 0.827 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.801 22.400 2.883 24.239 hybrid contribution 0.488 1.258 -1.444 1.976 sum -8.313 23.657 1.439 25.117 Atomic orbital electron populations 1.20794 0.87174 1.04279 1.03944 1.21549 0.97568 0.86877 0.88340 1.22349 0.93622 1.01263 1.08294 1.17787 0.88823 0.87141 0.93665 1.23051 0.86700 0.92794 1.04004 1.76075 1.21051 0.98717 1.16957 1.78926 0.88761 1.21727 1.15000 1.47891 1.11993 1.01837 1.45490 0.66686 1.75233 1.16267 1.00152 1.18396 1.68251 1.40848 0.97412 1.18634 1.21164 0.86021 0.88578 0.88456 1.58487 1.08626 1.07621 1.42000 1.22430 1.00911 0.94865 0.87748 1.21976 0.98572 0.91899 1.02237 1.19241 0.91589 0.95963 0.94025 1.20979 1.38707 0.99796 0.95067 0.90795 1.25069 0.94745 0.94527 0.98766 1.69913 1.43933 1.09517 1.30535 0.86886 0.79029 0.79067 0.84648 1.20298 1.21656 1.19115 1.21739 0.98944 0.92490 1.01042 1.22250 0.82393 0.99462 1.01694 1.67906 1.08152 1.30329 1.17769 0.89373 0.89860 0.89589 0.82688 0.89809 0.94515 0.91755 0.91329 0.95352 0.92706 0.91431 0.91789 0.93486 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.21 36.00 0.37 -0.41 16 2 C 0.21 2.43 6.82 -82.32 -0.56 1.86 16 3 C -0.23 -2.60 9.50 -38.99 -0.37 -2.98 16 4 C 0.28 3.82 6.79 -82.61 -0.56 3.25 16 5 C 0.22 2.75 8.06 -156.29 -1.26 1.49 16 6 N -0.25 -2.95 12.30 32.15 0.40 -2.56 16 7 N -0.05 -0.48 13.47 60.35 0.81 0.33 16 8 N -0.23 -1.78 7.90 60.35 0.48 -1.30 16 9 H 0.48 1.41 8.96 -340.36 -3.05 -1.64 16 10 N -0.25 -2.92 12.40 32.16 0.40 -2.52 16 11 N -0.53 -8.55 8.63 -10.46 -0.09 -8.64 16 12 C 0.51 8.65 7.18 -322.92 -2.32 6.34 16 13 N -0.45 -8.11 4.72 -175.45 -0.83 -8.94 16 14 C 0.07 1.19 5.33 -3.83 -0.02 1.17 16 15 C -0.11 -2.24 5.36 -26.65 -0.14 -2.39 16 16 C 0.01 0.25 1.85 -91.65 -0.17 0.08 16 17 C -0.51 -13.90 8.86 -34.44 -0.31 -14.20 16 18 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 21 Si 0.88 21.35 27.02 -169.99 -4.59 16.75 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.27 -6.19 6.78 56.52 0.38 -5.80 16 25 C -0.10 -2.08 5.36 -26.64 -0.14 -2.23 16 26 C 0.07 1.23 4.63 -3.83 -0.02 1.21 16 27 N -0.52 -7.95 9.58 -10.21 -0.10 -8.05 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.43 8.10 -51.93 -0.42 0.00 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.16 1.35 7.96 -52.48 -0.42 0.93 16 32 H 0.08 1.42 7.55 -51.93 -0.39 1.03 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.36 8.14 -51.92 -0.42 0.93 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.03 0.66 5.24 -51.93 -0.27 0.39 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 0.86 8.10 -51.94 -0.42 0.44 16 41 H 0.08 1.35 7.68 -51.93 -0.40 0.95 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -33.41 343.33 -11.08 -44.50 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -7.91 Total: -3.36 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -5.60 Total: -4.90 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 1.84 Total: -58.17 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.59 Total: 16.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.41 -11.08 -44.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605559550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.506 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds