Wall clock time and date at job start Tue Mar 31 2020 12:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38400 * 120.36146 * 2 1 4 4 C 1.39662 * 118.45775 * 180.21895 * 3 2 1 5 5 C 1.48397 * 120.50697 * 179.80028 * 4 3 2 6 6 N 1.34072 * 126.67871 * 359.70065 * 5 4 3 7 7 N 1.28978 * 107.26560 * 180.02562 * 6 5 4 8 8 N 1.28728 * 108.95607 * 359.97438 * 7 6 5 9 9 H 0.97000 * 125.34066 * 180.02562 * 8 7 6 10 10 N 1.28872 * 109.32023 * 0.02562 * 8 7 6 11 11 N 1.33088 * 118.98470 * 359.52589 * 4 3 2 12 12 C 1.32353 * 120.62243 * 0.25273 * 11 4 3 13 13 N 1.38411 * 119.15493 * 179.97438 * 12 11 4 14 14 C 1.46846 * 111.00038 * 235.79082 * 13 12 11 15 15 C 1.53040 * 109.52416 * 185.84192 * 14 13 12 16 16 C 1.53121 * 109.27643 * 300.81871 * 15 14 13 17 17 C 1.50705 * 109.52047 * 177.56075 * 16 15 14 18 18 H 1.08001 * 119.99722 * 275.45112 * 17 16 15 19 19 C 1.37877 * 120.00028 * 95.45259 * 17 16 15 20 20 N 1.31515 * 120.00006 * 185.93586 * 19 17 16 21 21 Si 1.86793 * 120.00016 * 5.94171 * 19 17 16 22 22 H 1.48499 * 109.47365 * 84.77391 * 21 19 17 23 23 H 1.48507 * 109.47225 * 204.77950 * 21 19 17 24 24 H 1.48507 * 109.47169 * 324.77523 * 21 19 17 25 25 C 1.53118 * 109.16137 * 57.65772 * 16 15 14 26 26 C 1.46848 * 111.00151 * 359.97438 * 13 12 11 27 27 N 1.32333 * 120.36039 * 179.74186 * 2 1 3 28 28 H 1.08997 * 109.47297 * 270.25762 * 1 2 3 29 29 H 1.09000 * 109.47090 * 30.25490 * 1 2 3 30 30 H 1.09003 * 109.46889 * 150.25602 * 1 2 3 31 31 H 1.08006 * 120.77313 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.46469 * 305.85259 * 14 13 12 33 33 H 1.08998 * 109.46538 * 65.82575 * 14 13 12 34 34 H 1.09008 * 109.50500 * 180.87857 * 15 14 13 35 35 H 1.09003 * 109.50368 * 60.76007 * 15 14 13 36 36 H 1.09000 * 109.52397 * 297.74604 * 16 15 14 37 37 H 0.96997 * 119.99938 * 179.97438 * 20 19 17 38 38 H 1.08994 * 109.50426 * 182.40682 * 25 16 15 39 39 H 1.08996 * 109.53859 * 62.30089 * 25 16 15 40 40 H 1.08989 * 109.46310 * 294.17461 * 26 13 12 41 41 H 1.08998 * 109.45986 * 54.15053 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1942 0.0000 4 6 3.6024 1.1478 -0.0047 5 6 4.3977 2.4006 -0.0094 6 7 3.9192 3.6530 -0.0153 7 7 4.9331 4.4502 -0.0183 8 7 6.0143 3.7516 -0.0140 9 1 6.9150 4.1117 -0.0146 10 7 5.7125 2.4988 -0.0087 11 7 4.2083 -0.0371 0.0007 12 6 3.5011 -1.1559 0.0052 13 7 4.1626 -2.3717 0.0102 14 6 3.7371 -3.2070 -1.1201 15 6 4.3764 -4.5924 -1.0015 16 6 5.9007 -4.4469 -0.9957 17 6 6.5353 -5.8023 -0.8189 18 1 6.6676 -6.2115 0.1718 19 6 6.9468 -6.5200 -1.9219 20 7 7.3925 -7.7489 -1.7780 21 14 6.8715 -5.7467 -3.6206 22 1 8.0998 -4.9457 -3.8548 23 1 6.7742 -6.8155 -4.6471 24 1 5.6805 -4.8642 -3.7104 25 6 6.3139 -3.5335 0.1617 26 6 5.6184 -2.1788 0.0088 27 7 2.1758 -1.1418 0.0051 28 1 -0.3634 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6851 2.1401 -0.0004 32 1 2.6516 -3.3060 -1.1102 33 1 4.0506 -2.7411 -2.0543 34 1 4.0728 -5.2071 -1.8490 35 1 4.0523 -5.0646 -0.0741 36 1 6.2286 -4.0104 -1.9392 37 1 7.6817 -8.2539 -2.5540 38 1 7.3945 -3.3917 0.1454 39 1 6.0209 -3.9887 1.1077 40 1 5.9227 -1.7180 -0.9308 41 1 5.8996 -1.5309 0.8389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605559550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:14 Heat of formation + Delta-G solvation = 163.418810 kcal Electronic energy + Delta-G solvation = -25758.628277 eV Core-core repulsion = 22097.151565 eV Total energy + Delta-G solvation = -3661.476711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.63727 -42.42224 -39.89778 -36.23679 -36.09703 -35.36633 -34.32172 -33.52896 -32.19877 -31.78610 -29.53660 -28.11454 -26.44747 -25.72210 -24.61491 -24.14231 -22.87841 -22.49939 -20.58779 -20.32166 -19.01978 -18.78972 -18.34141 -18.31830 -16.90652 -16.59911 -16.38732 -16.15057 -15.61276 -15.20720 -15.04733 -14.91061 -14.53743 -14.38437 -14.16873 -13.88829 -13.58002 -13.50629 -13.17246 -13.08937 -12.93404 -12.63868 -12.56660 -12.43078 -12.36180 -12.16017 -11.96439 -11.79818 -11.45457 -11.23843 -11.10149 -10.98088 -10.83066 -10.63941 -10.34940 -9.44614 -8.26527 -6.29195 -0.67083 -0.10435 0.03362 1.06990 1.21770 1.35456 1.36393 1.47109 1.91586 2.26334 2.36291 2.62732 2.78170 3.08362 3.32989 3.61049 3.65729 3.91617 4.00671 4.09070 4.13180 4.21502 4.29726 4.32574 4.46111 4.52605 4.64273 4.71054 4.81808 4.85591 4.89528 4.93580 4.98370 5.11317 5.24170 5.38147 5.48076 5.51293 5.59025 5.67527 5.73156 5.80434 6.17755 6.36411 6.77813 6.92990 7.03562 7.36118 8.90730 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003519 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.056732 B = 7955.740480 C = 9063.149662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.204 3.796 3 C -0.209 4.209 4 C 0.258 3.742 5 C 0.203 3.797 6 N -0.262 5.262 7 N -0.045 5.045 8 N -0.197 5.197 9 H 0.497 0.503 10 N -0.267 5.267 11 N -0.550 5.550 12 C 0.496 3.504 13 N -0.463 5.463 14 C 0.079 3.921 15 C -0.102 4.102 16 C 0.010 3.990 17 C -0.509 4.509 18 H 0.032 0.968 19 C 0.013 3.987 20 N -0.951 5.951 21 Si 0.939 3.061 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.246 1.246 25 C -0.098 4.098 26 C 0.085 3.915 27 N -0.540 5.540 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.186 0.814 32 H 0.097 0.903 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.029 0.971 37 H 0.265 0.735 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.153 26.580 1.683 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.055 3.945 3 C -0.235 4.235 4 C 0.110 3.890 5 C -0.078 4.078 6 N -0.136 5.136 7 N -0.039 5.039 8 N -0.048 5.048 9 H 0.357 0.643 10 N -0.120 5.120 11 N -0.272 5.272 12 C 0.140 3.860 13 N -0.182 5.182 14 C -0.046 4.046 15 C -0.141 4.141 16 C -0.009 4.009 17 C -0.547 4.547 18 H 0.050 0.950 19 C -0.184 4.184 20 N -0.591 5.591 21 Si 0.764 3.236 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.169 1.169 25 C -0.136 4.136 26 C -0.041 4.041 27 N -0.260 5.260 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.103 0.897 31 H 0.203 0.797 32 H 0.115 0.885 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.580 25.870 2.013 28.022 hybrid contribution 1.022 0.323 -1.051 1.501 sum -9.558 26.193 0.962 27.899 Atomic orbital electron populations 1.20969 0.83865 1.05690 1.05325 1.22316 0.99452 0.86016 0.86709 1.22713 0.92733 1.02442 1.05599 1.18108 0.90070 0.86810 0.94028 1.22975 0.86982 0.92845 1.05001 1.76058 1.21685 0.98288 1.17543 1.78870 0.88939 1.21415 1.14726 1.47909 1.12716 1.00732 1.43462 0.64333 1.75180 1.16245 1.01661 1.18936 1.68139 1.41546 0.98001 1.19511 1.20999 0.86684 0.88197 0.90145 1.58431 1.08336 1.09013 1.42418 1.22206 1.01305 0.93045 0.88086 1.21770 0.96978 0.93803 1.01518 1.19221 0.92793 0.93826 0.95061 1.21232 1.38486 1.01753 0.93264 0.94973 1.25912 0.94539 0.94817 1.03149 1.70063 1.45881 1.11320 1.31862 0.85853 0.80047 0.78470 0.79248 1.19414 1.21493 1.16929 1.21594 0.99294 0.93351 0.99341 1.21979 0.82775 0.97571 1.01806 1.67935 1.07511 1.32127 1.18411 0.87776 0.86866 0.89745 0.79704 0.88473 0.94510 0.92250 0.92383 0.95268 0.92624 0.91419 0.92809 0.93699 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.21 71.24 0.73 -0.40 16 2 C 0.20 4.21 6.82 42.52 0.29 4.50 16 3 C -0.21 -4.14 9.50 22.65 0.22 -3.93 16 4 C 0.26 6.66 6.79 42.01 0.29 6.94 16 5 C 0.20 4.78 8.06 137.34 1.11 5.89 16 6 N -0.26 -5.47 12.30 -52.20 -0.64 -6.12 16 7 N -0.04 -0.76 13.47 37.02 0.50 -0.27 16 8 N -0.20 -2.67 7.90 37.02 0.29 -2.38 16 9 H 0.50 1.75 8.96 -347.53 -3.12 -1.37 16 10 N -0.27 -5.81 12.40 -52.15 -0.65 -6.46 16 11 N -0.55 -17.08 8.63 -187.01 -1.61 -18.69 16 12 C 0.50 16.12 7.18 261.53 1.88 18.00 16 13 N -0.46 -16.39 4.72 -709.00 -3.34 -19.74 16 14 C 0.08 2.79 5.33 86.33 0.46 3.25 16 15 C -0.10 -4.23 5.36 30.65 0.16 -4.06 16 16 C 0.01 0.46 1.85 -11.46 -0.02 0.44 16 17 C -0.51 -28.85 8.86 25.60 0.23 -28.62 16 18 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 19 C 0.01 0.73 5.47 84.65 0.46 1.19 16 20 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 21 Si 0.94 44.08 27.02 68.60 1.85 45.94 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.25 -10.62 6.78 99.48 0.67 -9.95 16 25 C -0.10 -3.96 5.36 30.65 0.16 -3.80 16 26 C 0.09 3.04 4.63 86.33 0.40 3.44 16 27 N -0.54 -15.47 9.58 -186.22 -1.78 -17.25 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 0.60 8.10 -2.39 -0.02 0.58 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.19 2.46 7.96 -2.91 -0.02 2.44 16 32 H 0.10 3.16 7.55 -2.39 -0.02 3.14 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.03 1.34 5.24 -2.39 -0.01 1.33 16 37 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 41 H 0.08 2.90 7.68 -2.39 -0.02 2.88 16 Total: -1.00 -74.33 343.33 -0.80 -75.13 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -2.07 Total: 6.17 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.36 Total: 2.84 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -6.94 Total: -130.07 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.85 Total: 45.94 kcal Total: -74.33 -0.80 -75.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605559550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.546 kcal (2) G-P(sol) polarization free energy of solvation -74.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds