Wall clock time and date at job start Tue Mar 31 2020 11:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47194 * 179.97438 * 149.60447 * 3 2 1 5 5 C 1.53007 * 109.47132 * 197.90081 * 4 3 2 6 6 H 1.09000 * 109.46687 * 54.99826 * 5 4 3 7 7 C 1.52998 * 109.47021 * 175.00335 * 5 4 3 8 8 O 1.42894 * 109.47682 * 55.00228 * 7 5 4 9 9 N 1.46504 * 109.46833 * 295.00159 * 5 4 3 10 10 C 1.34774 * 119.99467 * 154.99695 * 9 5 4 11 11 O 1.21275 * 120.00685 * 0.02562 * 10 9 5 12 12 C 1.50709 * 119.99677 * 180.02562 * 10 9 5 13 13 C 1.53000 * 109.47062 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.46937 * 54.99862 * 13 12 10 15 15 C 1.50696 * 109.47104 * 295.00043 * 13 12 10 16 16 H 1.07997 * 119.99861 * 325.12457 * 15 13 12 17 17 C 1.37875 * 120.00142 * 145.12968 * 15 13 12 18 18 N 1.31512 * 120.00061 * 184.98976 * 17 15 13 19 19 Si 1.86803 * 119.99825 * 4.98409 * 17 15 13 20 20 H 1.48493 * 109.47055 * 84.73570 * 19 17 15 21 21 H 1.48504 * 109.46957 * 204.73265 * 19 17 15 22 22 H 1.48494 * 109.47278 * 324.72908 * 19 17 15 23 23 C 1.50703 * 109.47054 * 174.99815 * 13 12 10 24 24 C 1.38231 * 119.99571 * 64.69161 * 23 13 12 25 25 C 1.38240 * 119.99566 * 179.79074 * 24 23 13 26 26 C 1.38234 * 120.00054 * 0.43596 * 25 24 23 27 27 C 1.38238 * 120.00087 * 359.81774 * 26 25 24 28 28 C 1.38234 * 119.99894 * 244.96820 * 23 13 12 29 29 H 1.09007 * 109.46598 * 192.49092 * 1 2 3 30 30 H 1.08999 * 109.47260 * 312.49090 * 1 2 3 31 31 H 1.09005 * 109.47054 * 72.49867 * 1 2 3 32 32 H 1.08999 * 109.46984 * 77.90487 * 4 3 2 33 33 H 1.09003 * 109.47677 * 317.90052 * 4 3 2 34 34 H 1.09006 * 109.46740 * 175.00288 * 7 5 4 35 35 H 1.08997 * 109.47109 * 294.99349 * 7 5 4 36 36 H 0.96697 * 114.00615 * 180.02562 * 8 7 5 37 37 H 0.96993 * 119.99844 * 334.99743 * 9 5 4 38 38 H 1.09004 * 109.46715 * 300.00121 * 12 10 9 39 39 H 1.08993 * 109.47153 * 60.00265 * 12 10 9 40 40 H 0.97003 * 119.99759 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.00741 * 359.97438 * 24 23 13 42 42 H 1.07995 * 120.00130 * 180.27877 * 25 24 23 43 43 H 1.07999 * 120.00426 * 179.83590 * 26 25 24 44 44 H 1.07995 * 120.00283 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.00477 * 359.97400 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 -0.0003 5 6 4.6269 1.3749 0.4430 6 1 4.1923 1.6287 1.4098 7 6 6.1518 1.3393 0.5627 8 8 6.7164 0.8938 -0.6721 9 7 4.2382 2.3826 -0.5469 10 6 4.1104 3.6731 -0.1801 11 8 4.3175 4.0004 0.9692 12 6 3.7100 4.7097 -1.1982 13 6 3.6383 6.0828 -0.5270 14 1 4.5884 6.2981 -0.0379 15 6 2.5340 6.0836 0.4984 16 1 1.6314 5.5180 0.3203 17 6 2.6759 6.8066 1.6638 18 7 1.7568 6.7297 2.6013 19 14 4.1737 7.8951 1.9112 20 1 3.9336 9.2180 1.2809 21 1 4.4192 8.0764 3.3645 22 1 5.3588 7.2560 1.2850 23 6 3.3586 7.1365 -1.5674 24 6 2.1589 7.1286 -2.2540 25 6 1.9006 8.0977 -3.2053 26 6 2.8457 9.0694 -3.4763 27 6 4.0476 9.0743 -2.7934 28 6 4.3042 8.1076 -1.8391 29 1 -0.3633 -1.0034 0.2223 30 1 -0.3634 0.6941 0.7578 31 1 -0.3633 0.3091 -0.9801 32 1 4.4812 -0.2133 -1.0053 33 1 4.4822 -0.7604 0.6885 34 1 6.5217 2.3387 0.7918 35 1 6.4377 0.6544 1.3610 36 1 7.6822 0.8464 -0.6686 37 1 4.0729 2.1209 -1.4661 38 1 4.4481 4.7356 -1.9999 39 1 2.7338 4.4554 -1.6110 40 1 1.8564 7.2387 3.4211 41 1 1.4222 6.3670 -2.0452 42 1 0.9615 8.0942 -3.7385 43 1 2.6450 9.8251 -4.2214 44 1 4.7861 9.8331 -3.0055 45 1 5.2432 8.1114 -1.3056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592924708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:36 Heat of formation + Delta-G solvation = -24.236451 kcal Electronic energy + Delta-G solvation = -26075.676040 eV Core-core repulsion = 22445.016827 eV Total energy + Delta-G solvation = -3630.659213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.42342 -38.51402 -37.14147 -35.22979 -34.06713 -33.45097 -31.69154 -31.06458 -30.19924 -29.04566 -28.20967 -25.79415 -25.70590 -22.75563 -21.90289 -21.28649 -20.04470 -19.17329 -17.62385 -16.91978 -16.81467 -16.41504 -15.78502 -15.58778 -14.85587 -14.56268 -14.26724 -14.17387 -13.96992 -13.75143 -13.63439 -13.43618 -13.12147 -13.02844 -12.82563 -12.70783 -12.50561 -12.27958 -12.01740 -11.81444 -11.59295 -11.46206 -11.07897 -10.77591 -10.49235 -10.35014 -10.13303 -9.82985 -9.63717 -9.58262 -9.55382 -9.05166 -8.89356 -8.53500 -8.38490 -8.22019 -7.80217 -5.95156 -3.91231 2.09423 2.15418 2.83743 2.86504 3.42996 3.47055 3.48073 3.53243 3.70522 4.28709 4.32507 4.53097 4.58809 4.96305 5.20604 5.32104 5.35379 5.39506 5.52059 5.55631 5.56580 5.61915 5.66545 5.68787 5.70471 5.75673 5.85644 5.98255 6.05356 6.07241 6.10297 6.18374 6.25227 6.34989 6.65303 6.71387 6.84828 6.97213 7.06826 7.14444 7.27529 7.54680 7.60663 7.74492 7.81170 7.85272 8.14582 8.56772 9.03742 9.09624 9.69577 11.18231 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.004128 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.848419 B = 6781.748140 C = 6887.740738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.186 4.186 3 C -0.190 4.190 4 C -0.004 4.004 5 C 0.156 3.844 6 H 0.102 0.898 7 C 0.063 3.937 8 O -0.570 6.570 9 N -0.733 5.733 10 C 0.516 3.484 11 O -0.504 6.504 12 C -0.115 4.115 13 C 0.047 3.953 14 H 0.057 0.943 15 C -0.483 4.483 16 H 0.070 0.930 17 C 0.086 3.914 18 N -0.899 5.899 19 Si 0.871 3.129 20 H -0.277 1.277 21 H -0.292 1.292 22 H -0.262 1.262 23 C -0.039 4.039 24 C -0.101 4.101 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.124 4.124 28 C -0.141 4.141 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.376 0.624 37 H 0.395 0.605 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.261 0.739 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 -10.855 -9.671 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.186 4.186 3 C -0.191 4.191 4 C -0.041 4.041 5 C 0.050 3.950 6 H 0.120 0.880 7 C -0.016 4.016 8 O -0.375 6.375 9 N -0.388 5.388 10 C 0.303 3.697 11 O -0.376 6.376 12 C -0.155 4.155 13 C 0.027 3.973 14 H 0.075 0.925 15 C -0.520 4.520 16 H 0.088 0.912 17 C -0.116 4.116 18 N -0.537 5.537 19 Si 0.699 3.301 20 H -0.203 1.203 21 H -0.219 1.219 22 H -0.187 1.187 23 C -0.039 4.039 24 C -0.120 4.120 25 C -0.144 4.144 26 C -0.168 4.168 27 C -0.142 4.142 28 C -0.159 4.159 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.222 0.778 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.037 -10.543 -8.760 14.604 hybrid contribution 1.150 0.653 0.112 1.327 sum 6.187 -9.890 -8.648 14.521 Atomic orbital electron populations 1.18848 0.84870 1.02634 1.03248 1.22379 0.93917 1.00907 1.01399 1.22149 0.93486 1.01727 1.01689 1.18813 0.84581 0.96997 1.03710 1.20871 0.91723 0.87340 0.95054 0.88011 1.22698 0.94226 0.98936 0.85703 1.86443 1.25050 1.90014 1.35981 1.46054 1.72925 1.07419 1.12362 1.20799 0.76442 0.82288 0.90190 1.90727 1.47197 1.80025 1.19639 1.21623 1.01429 0.95897 0.96546 1.18300 0.99887 0.87193 0.91873 0.92492 1.20585 1.01778 1.29545 1.00068 0.91154 1.24858 0.95472 0.95918 0.95345 1.69889 1.34967 1.41652 1.07169 0.86963 0.84962 0.81175 0.76973 1.20274 1.21863 1.18700 1.20804 0.92750 0.96991 0.93404 1.20975 0.96954 0.98753 0.95268 1.21063 0.98626 0.95806 0.98918 1.20861 0.94895 0.99678 1.01396 1.20958 0.97184 0.98667 0.97429 1.21079 0.99435 0.96550 0.98840 0.90616 0.89907 0.90310 0.88647 0.88896 0.92482 0.93057 0.77814 0.77158 0.91442 0.89981 0.92919 0.86226 0.87166 0.87397 0.87346 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.44 10.32 34.37 0.35 -0.09 16 2 C -0.19 -2.69 14.13 -37.12 -0.52 -3.22 16 3 C -0.19 -2.74 13.05 -37.13 -0.48 -3.23 16 4 C 0.00 -0.05 4.97 -29.52 -0.15 -0.19 16 5 C 0.16 2.21 2.34 -67.93 -0.16 2.05 16 6 H 0.10 1.71 7.58 -51.93 -0.39 1.32 16 7 C 0.06 0.76 6.85 37.16 0.25 1.01 16 8 O -0.57 -5.96 12.83 -35.23 -0.45 -6.42 16 9 N -0.73 -11.54 4.72 -53.80 -0.25 -11.79 16 10 C 0.52 10.40 7.54 -10.98 -0.08 10.31 16 11 O -0.50 -12.49 14.65 5.56 0.08 -12.40 16 12 C -0.11 -2.22 4.96 -27.88 -0.14 -2.36 16 13 C 0.05 1.09 1.21 -92.92 -0.11 0.97 16 14 H 0.06 1.43 4.70 -51.93 -0.24 1.18 16 15 C -0.48 -13.44 6.87 -34.44 -0.24 -13.67 16 16 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 17 C 0.09 2.57 5.47 -17.82 -0.10 2.47 16 18 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 19 Si 0.87 23.00 27.15 -169.99 -4.62 18.39 16 20 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 22 H -0.26 -6.67 6.06 56.52 0.34 -6.33 16 23 C -0.04 -0.83 4.55 -104.62 -0.48 -1.30 16 24 C -0.10 -2.00 8.87 -39.58 -0.35 -2.35 16 25 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 26 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 27 C -0.12 -2.16 10.05 -39.58 -0.40 -2.55 16 28 C -0.14 -2.79 9.43 -39.58 -0.37 -3.17 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.05 7.73 -51.93 -0.40 0.65 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.38 2.37 9.12 45.56 0.42 2.78 16 37 H 0.40 5.36 8.60 -40.82 -0.35 5.01 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.51 7.86 -51.93 -0.41 1.10 16 40 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 41 H 0.12 2.34 7.80 -52.49 -0.41 1.93 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 45 H 0.11 2.09 7.95 -52.49 -0.42 1.67 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -35.80 383.16 -8.51 -44.32 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -6.05 Total: 10.49 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -3.77 Total: -20.75 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.52 Total: -39.39 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.37 Total: -18.82 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.62 Total: 18.39 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.80 -8.51 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592924708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.079 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds