Wall clock time and date at job start Tue Mar 31 2020 12:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47201 * 2 1 4 4 H 1.08997 * 109.47210 * 54.88686 * 3 2 1 5 5 C 1.50711 * 109.46906 * 174.88326 * 3 2 1 6 6 H 1.08000 * 119.99515 * 120.00454 * 5 3 2 7 7 C 1.37868 * 120.00046 * 300.00192 * 5 3 2 8 8 N 1.31511 * 120.00278 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99775 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47433 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47305 * 119.99913 * 9 7 5 12 12 H 1.48508 * 109.46753 * 239.99646 * 9 7 5 13 13 N 1.46895 * 109.47228 * 294.88166 * 3 2 1 14 14 C 1.46908 * 111.00163 * 154.15489 * 13 3 2 15 15 C 1.52991 * 109.47585 * 185.50527 * 14 13 3 16 16 C 1.52998 * 109.47577 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47239 * 180.02562 * 16 15 14 18 18 C 1.38234 * 120.00004 * 269.72164 * 17 16 15 19 19 C 1.38235 * 120.00001 * 179.74486 * 18 17 16 20 20 C 1.38246 * 119.99994 * 0.55465 * 19 18 17 21 21 C 1.50696 * 119.99873 * 179.72316 * 20 19 18 22 22 F 1.39905 * 109.47121 * 269.97610 * 21 20 19 23 23 F 1.39893 * 109.47530 * 29.97867 * 21 20 19 24 24 F 1.39908 * 109.46626 * 149.98117 * 21 20 19 25 25 C 1.38235 * 119.99581 * 359.70098 * 20 19 18 26 26 C 1.38233 * 120.00473 * 0.02562 * 25 20 19 27 27 H 1.08995 * 109.47510 * 177.28942 * 1 2 3 28 28 H 1.08991 * 109.47227 * 297.29067 * 1 2 3 29 29 H 1.09006 * 109.47123 * 57.28962 * 1 2 3 30 30 H 1.09004 * 109.46924 * 239.99644 * 2 1 3 31 31 H 1.08998 * 109.46835 * 120.00224 * 2 1 3 32 32 H 0.97000 * 120.00490 * 179.97438 * 8 7 5 33 33 H 1.00898 * 111.00513 * 278.10825 * 13 3 2 34 34 H 1.09003 * 109.46672 * 305.51016 * 14 13 3 35 35 H 1.09005 * 109.46893 * 65.50436 * 14 13 3 36 36 H 1.09009 * 109.47325 * 300.00664 * 15 14 13 37 37 H 1.09005 * 109.47080 * 60.00023 * 15 14 13 38 38 H 1.09003 * 109.46493 * 300.00374 * 16 15 14 39 39 H 1.08995 * 109.46934 * 59.99895 * 16 15 14 40 40 H 1.07998 * 119.99845 * 0.02562 * 18 17 16 41 41 H 1.08002 * 120.00302 * 180.27706 * 19 18 17 42 42 H 1.08000 * 120.00066 * 179.97438 * 25 20 19 43 43 H 1.07998 * 120.00719 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6038 1.9820 0.8406 5 6 3.5418 1.4442 0.1267 6 1 4.1485 1.8883 -0.6486 7 6 4.1410 0.8790 1.2323 8 7 3.4021 0.3388 2.1766 9 14 6.0023 0.8820 1.3896 10 1 6.5984 1.5461 0.2028 11 1 6.3941 1.6182 2.6183 12 1 6.4942 -0.5168 1.4727 13 7 1.6539 2.0983 -1.2564 14 6 1.5552 3.5537 -1.0819 15 6 1.0203 4.1865 -2.3679 16 6 0.9181 5.7023 -2.1864 17 6 0.3906 6.3255 -3.4530 18 6 1.2686 6.7405 -4.4368 19 6 0.7844 7.3074 -5.6009 20 6 -0.5772 7.4697 -5.7764 21 6 -1.1047 8.0934 -7.0428 22 9 -1.1982 9.4793 -6.8762 23 9 -0.2346 7.8084 -8.1005 24 9 -2.3712 7.5714 -7.3271 25 6 -1.4549 7.0594 -4.7903 26 6 -0.9710 6.4874 -3.6286 27 1 -0.3634 -1.0264 -0.0486 28 1 -0.3633 0.4711 0.9132 29 1 -0.3634 0.5554 -0.8647 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8236 -0.0592 2.9543 33 1 2.2970 1.8659 -1.9982 34 1 0.8767 3.7756 -0.2581 35 1 2.5417 3.9606 -0.8597 36 1 1.6987 3.9645 -3.1917 37 1 0.0337 3.7796 -2.5901 38 1 0.2399 5.9245 -1.3626 39 1 1.9048 6.1089 -1.9645 40 1 2.3325 6.6178 -4.2978 41 1 1.4701 7.6276 -6.3714 42 1 -2.5186 7.1866 -4.9271 43 1 -1.6566 6.1672 -2.8580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594009025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:26 Heat of formation + Delta-G solvation = -153.305661 kcal Electronic energy + Delta-G solvation = -25254.557240 eV Core-core repulsion = 21076.444426 eV Total energy + Delta-G solvation = -4178.112814 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.41897 -47.93655 -47.88413 -39.80914 -36.61709 -34.81651 -32.63628 -31.43387 -31.37772 -29.93845 -27.18960 -25.80127 -24.00383 -23.20938 -22.60173 -21.37136 -20.77511 -19.40225 -18.76797 -18.71017 -18.62497 -16.74349 -15.90573 -15.76856 -15.01687 -14.85085 -14.75251 -14.71922 -14.47876 -14.34525 -14.14354 -14.04676 -13.94742 -13.77508 -13.65778 -13.28230 -12.94232 -12.62119 -12.50719 -12.04527 -11.77385 -11.56218 -11.42456 -11.30080 -11.15146 -10.91297 -10.74830 -10.71647 -10.42910 -10.09820 -9.61399 -9.52454 -9.33594 -9.15614 -9.04315 -8.40964 -7.27554 -6.02488 -4.15692 0.66170 1.00366 2.40338 3.20983 3.23127 3.31953 3.34624 3.46138 3.76234 4.16356 4.36426 4.50998 4.54659 4.56682 5.01959 5.04011 5.15924 5.24317 5.26266 5.33529 5.60746 5.68559 5.75084 5.85105 5.89088 5.97063 6.09264 6.23351 6.30245 6.38162 6.50792 6.51890 6.57780 6.68958 6.70698 7.11886 7.16670 7.42615 7.57604 7.75435 8.07326 8.12455 8.31479 8.64304 8.97612 9.52157 10.97566 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.002155 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.851885 B =12989.135580 C =13630.514772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.691 5.691 14 C 0.067 3.933 15 C -0.108 4.108 16 C -0.088 4.088 17 C -0.036 4.036 18 C -0.120 4.120 19 C -0.069 4.069 20 C -0.197 4.197 21 C 0.509 3.491 22 F -0.179 7.179 23 F -0.178 7.178 24 F -0.178 7.178 25 C -0.068 4.068 26 C -0.119 4.119 27 H 0.024 0.976 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.090 0.910 32 H 0.261 0.739 33 H 0.327 0.673 34 H 0.060 0.940 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.808 15.191 -14.572 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.320 5.320 14 C -0.063 4.063 15 C -0.146 4.146 16 C -0.126 4.126 17 C -0.036 4.036 18 C -0.138 4.138 19 C -0.087 4.087 20 C -0.198 4.198 21 C 0.455 3.545 22 F -0.160 7.160 23 F -0.160 7.160 24 F -0.160 7.160 25 C -0.087 4.087 26 C -0.137 4.137 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.142 0.858 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.493 15.004 -14.318 22.808 hybrid contribution 1.947 0.323 -0.027 1.973 sum -7.546 15.327 -14.345 22.308 Atomic orbital electron populations 1.21707 0.99034 0.98430 1.00349 1.21496 0.92104 0.99277 1.01622 1.19139 0.92822 0.91261 0.86125 0.95094 1.21900 0.92790 1.38180 1.05501 0.92867 1.24939 0.97935 0.95000 0.95720 1.69884 1.34729 1.38300 1.09403 0.86606 0.86061 0.77779 0.77932 1.19940 1.21040 1.20933 1.60871 1.54884 1.06110 1.10118 1.21753 0.98792 0.90241 0.95547 1.21562 1.02119 0.91854 0.99072 1.20759 1.01916 0.96387 0.93564 1.20318 0.93391 0.93786 0.96100 1.21117 1.00507 0.99186 0.92972 1.20921 0.93332 0.96528 0.97882 1.19904 0.95942 1.08784 0.95156 1.18342 0.75380 0.76319 0.84448 1.93221 1.96029 1.31208 1.95585 1.93185 1.69554 1.93319 1.59925 1.93189 1.41835 1.86521 1.94438 1.20919 0.99603 0.95646 0.92488 1.21117 0.95328 0.99712 0.97540 0.95664 0.94570 0.93217 0.95151 0.89209 0.92916 0.85758 0.92197 0.95508 0.92316 0.91410 0.90381 0.90471 0.84713 0.84886 0.84866 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.83 37.16 0.37 -2.44 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.66 16 3 C 0.21 5.18 1.97 -68.87 -0.14 5.04 16 4 H 0.03 0.83 7.70 -51.93 -0.40 0.43 16 5 C -0.54 -14.37 8.47 -34.44 -0.29 -14.67 16 6 H 0.05 1.40 7.73 -52.49 -0.41 0.99 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.68 11.29 55.43 0.63 -24.06 16 9 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.69 -13.88 5.63 -107.95 -0.61 -14.49 16 14 C 0.07 1.15 5.51 -3.82 -0.02 1.13 16 15 C -0.11 -1.41 5.50 -26.74 -0.15 -1.56 16 16 C -0.09 -0.93 5.35 -27.89 -0.15 -1.08 16 17 C -0.04 -0.36 5.13 -104.62 -0.54 -0.89 16 18 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 19 C -0.07 -0.63 9.40 -39.58 -0.37 -1.00 16 20 C -0.20 -1.90 5.45 -104.62 -0.57 -2.47 16 21 C 0.51 4.94 3.36 36.00 0.12 5.06 16 22 F -0.18 -1.80 17.30 2.25 0.04 -1.76 16 23 F -0.18 -1.78 16.46 2.25 0.04 -1.75 16 24 F -0.18 -1.78 16.46 2.25 0.04 -1.74 16 25 C -0.07 -0.63 9.40 -39.58 -0.37 -1.00 16 26 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.97 7.68 -51.93 -0.40 0.57 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.33 6.52 8.46 -39.29 -0.33 6.19 16 34 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 35 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.13 1.01 7.60 -52.49 -0.40 0.61 16 42 H 0.13 1.00 7.61 -52.49 -0.40 0.60 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -27.63 367.61 -8.88 -36.50 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.41 Total: 3.85 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -3.12 Total: -17.86 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.02 Total: -38.55 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.11 Total: -5.25 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.63 -8.88 -36.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.801 kcal (2) G-P(sol) polarization free energy of solvation -27.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds