Wall clock time and date at job start Tue Mar 31 2020 10:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47260 * 2 1 4 4 C 1.46897 * 110.99939 * 291.80242 * 3 2 1 5 5 C 1.50696 * 109.47057 * 160.18119 * 4 3 2 6 6 H 1.08000 * 120.00584 * 4.62751 * 5 4 3 7 7 C 1.37882 * 120.00237 * 184.63671 * 5 4 3 8 8 N 1.31520 * 119.99647 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00240 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47527 * 89.99726 * 9 7 5 11 11 H 1.48507 * 109.47162 * 209.99851 * 9 7 5 12 12 H 1.48499 * 109.47235 * 329.99614 * 9 7 5 13 13 C 1.46898 * 110.99951 * 167.84686 * 3 2 1 14 14 C 1.50705 * 109.47293 * 293.95424 * 13 3 2 15 15 C 1.36603 * 120.18461 * 270.02618 * 14 13 3 16 16 O 1.35883 * 119.57450 * 359.95575 * 15 14 13 17 17 C 1.39813 * 120.85559 * 179.97438 * 15 14 13 18 18 C 1.36033 * 120.93341 * 0.02562 * 17 15 14 19 19 C 1.40533 * 119.74949 * 359.95805 * 18 17 15 20 20 C 1.40588 * 121.15418 * 180.02562 * 19 18 17 21 21 C 1.35998 * 119.74553 * 180.02562 * 20 19 18 22 22 C 1.39849 * 120.94418 * 359.97438 * 21 20 19 23 23 O 1.35880 * 119.57114 * 179.97438 * 22 21 20 24 24 C 1.42901 * 116.99994 * 0.02562 * 23 22 21 25 25 C 1.36569 * 120.86055 * 359.97438 * 22 21 20 26 26 C 1.40451 * 120.18765 * 89.99704 * 14 13 3 27 27 H 1.09002 * 109.46902 * 179.58438 * 1 2 3 28 28 H 1.09004 * 109.47300 * 299.58776 * 1 2 3 29 29 H 1.09004 * 109.47061 * 59.58799 * 1 2 3 30 30 H 1.08999 * 109.47228 * 240.00035 * 2 1 3 31 31 H 1.08998 * 109.47405 * 120.00455 * 2 1 3 32 32 H 1.08999 * 109.46810 * 280.17571 * 4 3 2 33 33 H 1.09004 * 109.47368 * 40.17433 * 4 3 2 34 34 H 0.97003 * 119.99669 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.46952 * 173.95730 * 13 3 2 36 36 H 1.08994 * 109.47462 * 53.95463 * 13 3 2 37 37 H 0.96697 * 114.00629 * 89.99977 * 16 15 14 38 38 H 1.07995 * 119.53456 * 179.97438 * 17 15 14 39 39 H 1.08000 * 120.12401 * 179.97438 * 18 17 15 40 40 H 1.07992 * 120.12927 * 359.97438 * 20 19 18 41 41 H 1.07994 * 119.52657 * 180.27953 * 21 20 19 42 42 H 1.09000 * 109.47124 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.47167 * 299.99687 * 24 23 22 44 44 H 1.08996 * 109.47106 * 59.99770 * 24 23 22 45 45 H 1.08004 * 120.19015 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7149 2.0511 -1.2733 5 6 1.7728 3.5451 -1.0851 6 1 2.0846 3.9584 -0.1372 7 6 1.4274 4.3847 -2.1229 8 7 1.0480 3.8815 -3.2773 9 14 1.4984 6.2366 -1.8893 10 1 2.8468 6.7318 -2.2662 11 1 0.4752 6.8836 -2.7494 12 1 1.2297 6.5668 -0.4667 13 6 3.4591 1.4344 0.2887 14 6 3.7047 0.9673 1.7004 15 6 3.7004 1.8638 2.7310 16 8 3.4742 3.1790 2.4749 17 6 3.9261 1.4458 4.0460 18 6 4.1563 0.1363 4.3337 19 6 4.1676 -0.8136 3.2981 20 6 4.4019 -2.1745 3.5620 21 6 4.4070 -3.0693 2.5379 22 6 4.1815 -2.6563 1.2210 23 8 4.1933 -3.5740 0.2190 24 6 4.4407 -4.9326 0.5865 25 6 3.9496 -1.3425 0.9288 26 6 3.9388 -0.3923 1.9637 27 1 -0.3633 -1.0277 -0.0075 28 1 -0.3634 0.5074 0.8937 29 1 -0.3633 0.5202 -0.8863 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.4457 1.7510 -2.0243 33 1 0.7163 1.7648 -1.6033 34 1 0.8054 4.4722 -4.0075 35 1 3.8172 2.4579 0.1773 36 1 3.9917 0.7855 -0.4065 37 1 2.5414 3.4316 2.5086 38 1 3.9183 2.1729 4.8445 39 1 4.3295 -0.1721 5.3541 40 1 4.5780 -2.5079 4.5740 41 1 4.5829 -4.1145 2.7452 42 1 4.4235 -5.5592 -0.3052 43 1 5.4178 -5.0077 1.0639 44 1 3.6703 -5.2672 1.2811 45 1 3.7771 -1.0354 -0.0922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060061363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:32 Heat of formation + Delta-G solvation = -27.842410 kcal Electronic energy + Delta-G solvation = -26873.046232 eV Core-core repulsion = 23242.230653 eV Total energy + Delta-G solvation = -3630.815579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.86062 -39.24491 -37.27379 -36.85978 -34.43886 -33.07459 -32.30522 -30.52044 -29.40993 -28.92304 -27.29902 -26.69576 -24.58900 -23.26405 -22.67519 -22.30568 -21.02953 -19.35573 -18.71271 -17.83957 -17.02019 -16.42217 -16.34405 -15.83565 -15.27936 -15.04079 -14.66340 -14.62463 -14.08359 -13.93910 -13.75240 -13.62143 -13.14320 -13.10692 -12.94655 -12.83886 -12.24960 -11.94416 -11.79583 -11.67474 -11.46881 -11.33478 -11.03145 -10.87260 -10.76741 -10.67465 -10.49062 -10.34519 -10.21055 -10.10384 -9.63794 -9.49647 -9.12393 -8.35932 -8.12248 -7.52896 -7.18437 -5.96370 -3.96818 0.59253 1.07605 2.11766 2.95857 3.22215 3.36704 3.42725 3.46639 4.09824 4.48299 4.55362 4.60228 4.78102 4.84869 4.97051 5.00239 5.05540 5.14893 5.21265 5.28451 5.31789 5.40033 5.45836 5.69380 5.77036 5.83708 5.93303 5.98817 6.12617 6.16679 6.21285 6.25534 6.29661 6.42301 6.53026 6.59819 6.66617 6.69758 6.85323 6.91568 6.96192 7.30852 7.35125 7.40869 7.88339 8.09661 8.17713 8.25745 8.60448 9.10873 9.66865 11.14295 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.004284 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.019330 B = 6533.766974 C = 7830.067366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 N -0.527 5.527 4 C 0.189 3.811 5 C -0.500 4.500 6 H 0.065 0.935 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.273 1.273 13 C 0.099 3.901 14 C -0.089 4.089 15 C 0.138 3.862 16 O -0.492 6.492 17 C -0.144 4.144 18 C -0.093 4.093 19 C -0.092 4.092 20 C -0.066 4.066 21 C -0.195 4.195 22 C 0.121 3.879 23 O -0.317 6.317 24 C 0.028 3.972 25 C -0.146 4.146 26 C 0.006 3.994 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.020 0.980 31 H 0.067 0.933 32 H -0.012 1.012 33 H 0.039 0.961 34 H 0.260 0.740 35 H 0.100 0.900 36 H 0.031 0.969 37 H 0.399 0.601 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -15.211 14.233 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 N -0.252 5.252 4 C 0.064 3.936 5 C -0.539 4.539 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.198 1.198 13 C -0.028 4.028 14 C -0.090 4.090 15 C 0.092 3.908 16 O -0.304 6.304 17 C -0.163 4.163 18 C -0.111 4.111 19 C -0.092 4.092 20 C -0.084 4.084 21 C -0.213 4.213 22 C 0.076 3.924 23 O -0.230 6.230 24 C -0.067 4.067 25 C -0.165 4.165 26 C 0.006 3.994 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.005 0.995 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.049 0.951 37 H 0.256 0.744 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.116 0.884 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.292 -14.844 14.131 21.439 hybrid contribution -0.060 0.320 -0.425 0.535 sum 6.232 -14.524 13.707 20.920 Atomic orbital electron populations 1.21762 0.95721 0.99836 1.02770 1.22276 0.95827 0.91131 0.99347 1.62222 1.11771 1.13444 1.37713 1.19825 0.96380 0.94005 0.83350 1.21173 1.43882 0.90477 0.98339 0.91689 1.24981 0.95586 0.98880 0.95225 1.69965 1.46161 1.34983 1.02976 0.86525 0.77549 0.85422 0.78046 1.20850 1.21495 1.19777 1.20885 0.90541 1.02202 0.89200 1.20137 1.00272 0.91195 0.97385 1.17920 0.98113 0.83905 0.90862 1.84710 1.31920 1.20838 1.92923 1.21119 1.02613 0.96351 0.96183 1.20741 0.99956 0.92362 0.98057 1.17999 1.04432 0.93794 0.92984 1.20791 0.97152 0.91760 0.98682 1.20954 1.07654 1.00480 0.92262 1.18599 0.97456 0.89443 0.86856 1.86123 1.86844 1.17064 1.33015 1.23021 1.00415 0.80779 1.02479 1.20371 1.05839 0.89894 1.00365 1.17520 0.97512 0.92569 0.91842 0.93830 0.92592 0.91951 0.96224 0.91482 0.99461 0.94309 0.93059 0.88222 0.95133 0.74362 0.85601 0.85627 0.85413 0.85584 0.88393 0.92856 0.92793 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.93 37.16 0.37 -2.21 16 2 C 0.04 0.81 4.27 -3.82 -0.02 0.79 16 3 N -0.53 -11.26 4.40 -237.52 -1.04 -12.30 16 4 C 0.19 4.88 4.61 -4.98 -0.02 4.86 16 5 C -0.50 -13.81 8.61 -34.44 -0.30 -14.10 16 6 H 0.06 1.76 7.67 -52.49 -0.40 1.36 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 13 C 0.10 1.99 4.47 -4.97 -0.02 1.96 16 14 C -0.09 -1.54 4.92 -104.38 -0.51 -2.05 16 15 C 0.14 2.23 6.63 -39.58 -0.26 1.97 16 16 O -0.49 -8.23 12.44 -19.37 -0.24 -8.47 16 17 C -0.14 -1.92 9.88 -39.78 -0.39 -2.31 16 18 C -0.09 -1.12 9.76 -39.51 -0.39 -1.51 16 19 C -0.09 -1.25 5.74 -106.79 -0.61 -1.86 16 20 C -0.07 -0.73 9.76 -39.50 -0.39 -1.12 16 21 C -0.20 -2.19 8.93 -39.78 -0.36 -2.54 16 22 C 0.12 1.67 6.63 -39.58 -0.26 1.40 16 23 O -0.32 -4.13 10.47 -19.36 -0.20 -4.33 16 24 C 0.03 0.23 9.80 101.05 0.99 1.22 16 25 C -0.15 -2.30 7.15 -39.33 -0.28 -2.58 16 26 C 0.01 0.10 4.81 -106.85 -0.51 -0.42 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 1.24 6.33 -51.93 -0.33 0.91 16 30 H 0.02 0.39 7.55 -51.93 -0.39 -0.01 16 31 H 0.07 1.21 4.53 -51.93 -0.24 0.97 16 32 H -0.01 -0.35 8.00 -51.93 -0.42 -0.76 16 33 H 0.04 1.07 6.00 -51.93 -0.31 0.76 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.10 2.20 6.68 -51.93 -0.35 1.85 16 36 H 0.03 0.61 6.40 -51.93 -0.33 0.28 16 37 H 0.40 5.75 9.06 45.56 0.41 6.16 16 38 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.13 1.04 6.21 -52.49 -0.33 0.72 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.36 7.64 -51.93 -0.40 -0.04 16 44 H 0.05 0.37 7.63 -51.93 -0.40 -0.02 16 45 H 0.14 2.36 5.02 -52.48 -0.26 2.09 16 LS Contribution 358.44 15.07 5.40 5.40 Total: -1.00 -31.81 358.44 -8.84 -40.65 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.41 Total: 5.49 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -3.06 Total: -17.08 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.31 Total: -38.37 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.44 Total: -12.81 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.81 -8.84 -40.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060061363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.804 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds