Wall clock time and date at job start Tue Mar 31 2020 12:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99754 * 2 1 4 4 H 1.48499 * 109.47110 * 269.99887 * 3 2 1 5 5 H 1.48499 * 109.47175 * 30.00084 * 3 2 1 6 6 H 1.48502 * 109.46863 * 150.00462 * 3 2 1 7 7 C 1.37873 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00061 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99930 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47132 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47269 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.42092 * 110.54385 * 61.94472 * 12 11 10 14 14 O 1.42098 * 110.54150 * 285.18648 * 12 11 10 15 15 N 1.65600 * 104.44577 * 173.56912 * 12 11 10 16 16 C 1.47428 * 125.64728 * 276.01828 * 15 12 11 17 17 C 1.54908 * 104.83052 * 204.09664 * 16 15 12 18 18 C 1.55153 * 101.58163 * 322.98498 * 17 16 15 19 19 C 1.47024 * 125.65099 * 95.97986 * 15 12 11 20 20 H 1.08995 * 109.88257 * 59.40329 * 19 15 12 21 21 C 1.53002 * 109.87796 * 298.38865 * 19 15 12 22 22 C 1.54889 * 110.75286 * 187.03249 * 21 19 15 23 23 C 1.54266 * 104.19900 * 156.25978 * 22 21 19 24 24 C 1.53880 * 106.59301 * 336.38833 * 23 22 21 25 25 C 1.54263 * 106.59904 * 0.02562 * 24 23 22 26 26 H 0.97003 * 119.99737 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46955 * 59.99835 * 9 7 2 28 28 H 1.08999 * 109.46592 * 299.99687 * 9 7 2 29 29 H 1.09003 * 109.46848 * 59.99898 * 10 9 7 30 30 H 1.08998 * 109.47179 * 300.00018 * 10 9 7 31 31 H 1.08997 * 109.46640 * 60.00195 * 11 10 9 32 32 H 1.08999 * 109.46770 * 300.00132 * 11 10 9 33 33 H 1.09006 * 110.36138 * 322.93377 * 16 15 12 34 34 H 1.08992 * 110.37067 * 85.14444 * 16 15 12 35 35 H 1.09001 * 111.00483 * 81.06563 * 17 16 15 36 36 H 1.09007 * 110.99939 * 204.91660 * 17 16 15 37 37 H 1.08995 * 110.72379 * 277.14284 * 18 17 16 38 38 H 1.09008 * 110.71567 * 153.86803 * 18 17 16 39 39 H 1.08997 * 110.81524 * 63.69828 * 21 19 15 40 40 H 1.09002 * 110.49059 * 37.57890 * 22 21 19 41 41 H 1.09003 * 110.48896 * 274.93590 * 22 21 19 42 42 H 1.08991 * 110.03270 * 217.10388 * 23 22 21 43 43 H 1.08997 * 110.03376 * 95.66823 * 23 22 21 44 44 H 1.09005 * 110.02858 * 119.28754 * 24 23 22 45 45 H 1.09001 * 110.03086 * 240.71389 * 24 23 22 46 46 H 1.09006 * 110.48307 * 142.28887 * 25 24 23 47 47 H 1.08996 * 110.48335 * 264.93106 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5516 -2.6365 -0.0001 12 16 6.1562 -4.3468 -0.0010 13 8 5.7323 -5.0249 -1.1756 14 8 5.9938 -4.9338 1.2828 15 7 7.7963 -4.2051 -0.1806 16 6 8.5102 -4.0504 -1.4612 17 6 9.9409 -4.5754 -1.1835 18 6 10.1783 -4.0801 0.2675 19 6 8.7816 -4.2119 0.9106 20 1 8.7134 -5.1474 1.4658 21 6 8.5271 -3.0304 1.8487 22 6 9.6553 -2.9143 2.9036 23 6 9.6186 -1.4337 3.3355 24 6 8.9702 -0.6543 2.1779 25 6 8.6350 -1.6884 1.0834 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8751 -0.6796 -0.8895 29 1 3.6585 -3.1501 -0.8903 30 1 3.6579 -3.1505 0.8896 31 1 5.9149 -2.1228 0.8899 32 1 5.9148 -2.1226 -0.8901 33 1 8.0310 -4.6474 -2.2372 34 1 8.5397 -3.0011 -1.7548 35 1 9.9747 -5.6637 -1.2355 36 1 10.6606 -4.1305 -1.8708 37 1 10.5082 -3.0413 0.2714 38 1 10.9000 -4.7170 0.7791 39 1 7.5544 -3.1220 2.3319 40 1 10.6201 -3.1581 2.4589 41 1 9.4509 -3.5648 3.7540 42 1 10.6313 -1.0703 3.5093 43 1 9.0213 -1.3235 4.2405 44 1 8.0584 -0.1657 2.5214 45 1 9.6684 0.0875 1.7900 46 1 7.6864 -1.4440 0.6054 47 1 9.4350 -1.7346 0.3445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068897639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:01 Heat of formation + Delta-G solvation = -96.701543 kcal Electronic energy + Delta-G solvation = -26007.958531 eV Core-core repulsion = 22509.600947 eV Total energy + Delta-G solvation = -3498.357584 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.96059 -37.11184 -36.80843 -35.78205 -34.81244 -32.22304 -31.19761 -30.86752 -28.92066 -28.30905 -26.63567 -23.71812 -22.69868 -22.07023 -20.53682 -20.43742 -19.71758 -18.50466 -17.53388 -16.94847 -16.65850 -16.22044 -15.78190 -15.49730 -14.91606 -14.36036 -14.20371 -14.10497 -13.84657 -13.72664 -13.53108 -12.89200 -12.83446 -12.35321 -12.18129 -12.07471 -11.90277 -11.89418 -11.73845 -11.58760 -11.48223 -11.42967 -11.33192 -11.25655 -11.02499 -10.95739 -10.93588 -10.84387 -10.54935 -10.36364 -10.09690 -9.87441 -9.70146 -9.27850 -8.95473 -8.58967 -6.08650 -4.07832 0.36805 2.71057 3.25916 3.33541 3.35637 3.94373 4.08272 4.20638 4.35298 4.39683 4.39952 4.53552 4.67107 4.73215 4.98813 5.06021 5.08933 5.14943 5.17107 5.24687 5.25117 5.33925 5.35787 5.47295 5.50144 5.54543 5.60778 5.62855 5.68646 5.76131 5.76653 5.79667 5.91858 5.96532 6.00696 6.10432 6.11768 6.19992 6.23192 6.29067 6.37139 6.67004 7.12343 7.26623 7.70872 8.47580 8.95853 9.52527 11.04692 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.004311 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.842398 B = 6493.311684 C = 7620.563669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.096 4.096 11 C -0.619 4.619 12 S 2.614 3.386 13 O -0.957 6.957 14 O -0.955 6.955 15 N -1.011 6.011 16 C 0.113 3.887 17 C -0.128 4.128 18 C -0.128 4.128 19 C 0.163 3.837 20 H 0.080 0.920 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.127 4.127 25 C -0.129 4.129 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.342 -5.324 1.570 26.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.042 4.042 10 C -0.136 4.136 11 C -0.750 4.750 12 S 2.711 3.289 13 O -0.947 6.947 14 O -0.946 6.946 15 N -0.847 5.847 16 C -0.012 4.012 17 C -0.167 4.167 18 C -0.167 4.167 19 C 0.057 3.943 20 H 0.098 0.902 21 C -0.142 4.142 22 C -0.152 4.152 23 C -0.162 4.162 24 C -0.165 4.165 25 C -0.166 4.166 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 25.624 -6.060 1.654 26.383 hybrid contribution 0.368 1.759 -0.009 1.797 sum 25.992 -4.301 1.645 26.397 Atomic orbital electron populations 1.69915 1.06276 1.26961 1.50740 1.25017 0.94744 0.99127 0.94461 0.86787 0.80349 0.83669 0.78533 1.20219 1.21257 1.19054 1.21137 0.89258 0.94770 1.51297 0.90737 1.19515 0.97300 0.90677 0.96674 1.21306 0.86621 1.02937 1.02708 1.30786 1.09390 1.23761 1.11107 1.04954 0.71680 0.78050 0.74168 1.93564 1.80063 1.71240 1.49835 1.93561 1.84298 1.75128 1.41618 1.58815 1.23001 1.89777 1.13114 1.22039 0.92660 1.00875 0.85621 1.22741 0.95819 1.01496 0.96649 1.22816 0.95679 1.02543 0.95625 1.21210 0.87938 0.97997 0.87190 0.90167 1.22741 1.00554 0.94711 0.96207 1.22363 0.98180 0.96581 0.98084 1.22124 1.00575 0.95013 0.98484 1.22147 1.00721 0.97918 0.95708 1.22624 1.02304 0.93813 0.97866 0.92630 0.96223 0.96634 0.90906 0.91221 0.85250 0.85464 0.89870 0.91619 0.90648 0.90140 0.89768 0.90371 0.89675 0.91059 0.91414 0.91992 0.91805 0.91651 0.91956 0.91245 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.53 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 9 C 0.00 -0.07 4.04 -27.88 -0.11 -0.18 16 10 C -0.10 -1.91 5.16 -26.73 -0.14 -2.05 16 11 C -0.62 -9.35 5.25 37.16 0.20 -9.15 16 12 S 2.61 39.88 5.34 -107.50 -0.57 39.30 16 13 O -0.96 -17.32 17.40 -57.54 -1.00 -18.32 16 14 O -0.96 -16.93 17.06 -57.54 -0.98 -17.91 16 15 N -1.01 -11.52 2.97 -104.42 -0.31 -11.83 16 16 C 0.11 1.03 7.11 -2.53 -0.02 1.01 16 17 C -0.13 -0.87 7.08 -24.59 -0.17 -1.04 16 18 C -0.13 -0.86 4.81 -24.90 -0.12 -0.98 16 19 C 0.16 1.58 2.64 -66.95 -0.18 1.40 16 20 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.12 -1.20 2.75 -88.64 -0.24 -1.44 16 22 C -0.11 -0.91 6.12 -25.07 -0.15 -1.06 16 23 C -0.12 -1.00 6.80 -25.61 -0.17 -1.18 16 24 C -0.13 -1.14 6.80 -25.61 -0.17 -1.31 16 25 C -0.13 -1.19 5.75 -25.09 -0.14 -1.33 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 28 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.13 1.76 6.79 -51.93 -0.35 1.41 16 32 H 0.13 1.64 8.14 -51.92 -0.42 1.22 16 33 H 0.08 0.81 7.72 -51.93 -0.40 0.41 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.08 0.51 5.47 -51.93 -0.28 0.23 16 38 H 0.08 0.43 8.13 -51.92 -0.42 0.01 16 39 H 0.08 1.00 7.64 -51.93 -0.40 0.60 16 40 H 0.07 0.46 6.55 -51.93 -0.34 0.12 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.70 5.68 -51.93 -0.29 0.41 16 47 H 0.07 0.58 5.83 -51.93 -0.30 0.28 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -34.60 366.98 -11.32 -45.92 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.22 Total: -1.62 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: -1.86 Total: -30.86 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.46 Total: -38.87 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.98 Total: -36.23 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: 39.88 SS G_CDS: -0.57 Total: 39.30 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.60 -11.32 -45.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068897639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.786 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds