Wall clock time and date at job start Tue Mar 31 2020 12:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99754 * 2 1 4 4 H 1.48499 * 109.47110 * 269.99887 * 3 2 1 5 5 H 1.48499 * 109.47175 * 30.00084 * 3 2 1 6 6 H 1.48502 * 109.46863 * 150.00462 * 3 2 1 7 7 C 1.37873 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00061 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99930 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47132 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47269 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.42092 * 110.54385 * 61.94472 * 12 11 10 14 14 O 1.42098 * 110.54150 * 285.18648 * 12 11 10 15 15 N 1.65600 * 104.44577 * 173.56912 * 12 11 10 16 16 C 1.47428 * 125.64728 * 276.01828 * 15 12 11 17 17 C 1.54908 * 104.83052 * 204.09664 * 16 15 12 18 18 C 1.55153 * 101.58163 * 322.98498 * 17 16 15 19 19 C 1.47024 * 125.65099 * 95.97986 * 15 12 11 20 20 H 1.08995 * 109.88257 * 59.40329 * 19 15 12 21 21 C 1.53002 * 109.87796 * 298.38865 * 19 15 12 22 22 C 1.54889 * 110.75286 * 187.03249 * 21 19 15 23 23 C 1.54266 * 104.19900 * 156.25978 * 22 21 19 24 24 C 1.53880 * 106.59301 * 336.38833 * 23 22 21 25 25 C 1.54263 * 106.59904 * 0.02562 * 24 23 22 26 26 H 0.97003 * 119.99737 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46955 * 59.99835 * 9 7 2 28 28 H 1.08999 * 109.46592 * 299.99687 * 9 7 2 29 29 H 1.09003 * 109.46848 * 59.99898 * 10 9 7 30 30 H 1.08998 * 109.47179 * 300.00018 * 10 9 7 31 31 H 1.08997 * 109.46640 * 60.00195 * 11 10 9 32 32 H 1.08999 * 109.46770 * 300.00132 * 11 10 9 33 33 H 1.09006 * 110.36138 * 322.93377 * 16 15 12 34 34 H 1.08992 * 110.37067 * 85.14444 * 16 15 12 35 35 H 1.09001 * 111.00483 * 81.06563 * 17 16 15 36 36 H 1.09007 * 110.99939 * 204.91660 * 17 16 15 37 37 H 1.08995 * 110.72379 * 277.14284 * 18 17 16 38 38 H 1.09008 * 110.71567 * 153.86803 * 18 17 16 39 39 H 1.08997 * 110.81524 * 63.69828 * 21 19 15 40 40 H 1.09002 * 110.49059 * 37.57890 * 22 21 19 41 41 H 1.09003 * 110.48896 * 274.93590 * 22 21 19 42 42 H 1.08991 * 110.03270 * 217.10388 * 23 22 21 43 43 H 1.08997 * 110.03376 * 95.66823 * 23 22 21 44 44 H 1.09005 * 110.02858 * 119.28754 * 24 23 22 45 45 H 1.09001 * 110.03086 * 240.71389 * 24 23 22 46 46 H 1.09006 * 110.48307 * 142.28887 * 25 24 23 47 47 H 1.08996 * 110.48335 * 264.93106 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5516 -2.6365 -0.0001 12 16 6.1562 -4.3468 -0.0010 13 8 5.7323 -5.0249 -1.1756 14 8 5.9938 -4.9338 1.2828 15 7 7.7963 -4.2051 -0.1806 16 6 8.5102 -4.0504 -1.4612 17 6 9.9409 -4.5754 -1.1835 18 6 10.1783 -4.0801 0.2675 19 6 8.7816 -4.2119 0.9106 20 1 8.7134 -5.1474 1.4658 21 6 8.5271 -3.0304 1.8487 22 6 9.6553 -2.9143 2.9036 23 6 9.6186 -1.4337 3.3355 24 6 8.9702 -0.6543 2.1779 25 6 8.6350 -1.6884 1.0834 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8751 -0.6796 -0.8895 29 1 3.6585 -3.1501 -0.8903 30 1 3.6579 -3.1505 0.8896 31 1 5.9149 -2.1228 0.8899 32 1 5.9148 -2.1226 -0.8901 33 1 8.0310 -4.6474 -2.2372 34 1 8.5397 -3.0011 -1.7548 35 1 9.9747 -5.6637 -1.2355 36 1 10.6606 -4.1305 -1.8708 37 1 10.5082 -3.0413 0.2714 38 1 10.9000 -4.7170 0.7791 39 1 7.5544 -3.1220 2.3319 40 1 10.6201 -3.1581 2.4589 41 1 9.4509 -3.5648 3.7540 42 1 10.6313 -1.0703 3.5093 43 1 9.0213 -1.3235 4.2405 44 1 8.0584 -0.1657 2.5214 45 1 9.6684 0.0875 1.7900 46 1 7.6864 -1.4440 0.6054 47 1 9.4350 -1.7346 0.3445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068897639.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:00 Heat of formation + Delta-G solvation = -119.395969 kcal Electronic energy + Delta-G solvation = -26008.942635 eV Core-core repulsion = 22509.600947 eV Total energy + Delta-G solvation = -3499.341688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.65805 -38.31119 -37.61965 -37.11742 -36.55453 -34.29293 -31.92234 -31.54946 -30.26760 -29.42638 -27.30377 -25.47172 -23.56477 -22.72804 -22.14712 -21.18916 -20.53699 -19.57477 -19.01199 -18.52727 -17.57965 -17.30804 -16.92425 -16.42307 -16.21753 -15.96920 -15.45180 -14.98854 -14.82829 -14.58544 -14.41087 -14.27342 -14.00237 -13.74469 -13.46908 -13.30910 -13.27846 -13.22302 -12.73747 -12.69919 -12.67293 -12.62748 -12.10907 -12.04982 -11.98228 -11.88854 -11.84727 -11.68604 -11.65732 -11.53063 -11.44305 -11.30226 -11.17254 -10.98797 -10.80009 -9.86523 -8.32348 -6.38578 -0.84709 1.34128 1.36963 1.48561 1.64704 2.33951 2.73504 3.01607 3.02764 3.48530 3.65608 3.67950 3.68999 3.80205 3.90889 4.08103 4.19642 4.25382 4.39119 4.46882 4.51248 4.55414 4.61720 4.69817 4.71468 4.74750 4.82890 4.87325 4.89549 4.97317 5.04252 5.08402 5.09220 5.16164 5.16875 5.26384 5.28444 5.31564 5.36469 5.40564 5.48385 5.51203 5.58967 5.60000 5.63649 6.22324 6.69143 7.26098 8.84732 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.004311 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.842398 B = 6493.311684 C = 7620.563669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.545 4.545 8 H 0.029 0.971 9 C -0.002 4.002 10 C -0.101 4.101 11 C -0.611 4.611 12 S 2.627 3.373 13 O -0.990 6.990 14 O -0.988 6.988 15 N -1.006 6.006 16 C 0.100 3.900 17 C -0.121 4.121 18 C -0.119 4.119 19 C 0.155 3.845 20 H 0.067 0.933 21 C -0.128 4.128 22 C -0.110 4.110 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.129 4.129 26 H 0.268 0.732 27 H 0.030 0.970 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.721 -3.561 1.052 30.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.164 1.164 7 C -0.583 4.583 8 H 0.047 0.953 9 C -0.040 4.040 10 C -0.140 4.140 11 C -0.742 4.742 12 S 2.726 3.274 13 O -0.981 6.981 14 O -0.978 6.978 15 N -0.845 5.845 16 C -0.024 4.024 17 C -0.160 4.160 18 C -0.157 4.157 19 C 0.050 3.950 20 H 0.085 0.915 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.162 4.162 24 C -0.167 4.167 25 C -0.167 4.167 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 30.006 -4.322 1.136 30.337 hybrid contribution -1.039 1.111 0.162 1.530 sum 28.967 -3.211 1.298 29.173 Atomic orbital electron populations 1.70085 1.08495 1.28355 1.52224 1.26092 0.95688 1.03814 0.93783 0.85606 0.79632 0.77635 0.79491 1.18725 1.20975 1.16388 1.21533 0.92253 0.93323 1.51214 0.95262 1.19469 0.93766 0.93149 0.97624 1.21166 0.90237 1.00672 1.01947 1.30691 1.05618 1.24500 1.13421 1.04180 0.72695 0.77771 0.72784 1.93518 1.81466 1.72244 1.50850 1.93513 1.85396 1.75991 1.42921 1.58479 1.21555 1.89437 1.14984 1.22385 0.93698 1.02296 0.84046 1.22762 0.94570 1.01482 0.97201 1.22837 0.93657 1.03951 0.95278 1.21433 0.89256 0.97464 0.86858 0.91508 1.22736 0.99957 0.95262 0.96810 1.22375 0.98448 0.96474 0.97486 1.22132 1.01267 0.94999 0.97782 1.22167 1.00408 0.98184 0.95949 1.22668 1.02572 0.93171 0.98245 0.92363 0.95213 0.94967 0.91779 0.92337 0.83550 0.82614 0.91028 0.89428 0.91032 0.87406 0.88206 0.88550 0.92512 0.88798 0.91910 0.90318 0.92846 0.93309 0.90596 0.92286 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 2 C 0.00 0.18 5.47 84.65 0.46 0.65 16 3 Si 0.95 43.63 27.47 68.60 1.88 45.52 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 7 C -0.55 -32.17 9.66 25.60 0.25 -31.92 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 9 C 0.00 -0.07 4.04 29.85 0.12 0.05 16 10 C -0.10 -4.06 5.16 30.59 0.16 -3.91 16 11 C -0.61 -17.80 5.25 71.98 0.38 -17.42 16 12 S 2.63 80.35 5.34 -56.49 -0.30 80.05 16 13 O -0.99 -36.45 17.40 -127.65 -2.22 -38.67 16 14 O -0.99 -36.05 17.06 -127.65 -2.18 -38.22 16 15 N -1.01 -21.41 2.97 -484.27 -1.44 -22.85 16 16 C 0.10 1.54 7.11 86.85 0.62 2.16 16 17 C -0.12 -1.18 7.08 31.98 0.23 -0.95 16 18 C -0.12 -1.12 4.81 31.78 0.15 -0.97 16 19 C 0.16 2.70 2.64 45.34 0.12 2.82 16 20 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 21 C -0.13 -2.27 2.75 -9.51 -0.03 -2.30 16 22 C -0.11 -1.48 6.12 31.67 0.19 -1.28 16 23 C -0.12 -1.70 6.80 31.32 0.21 -1.49 16 24 C -0.13 -1.97 6.80 31.32 0.21 -1.76 16 25 C -0.13 -2.00 5.75 31.66 0.18 -1.81 16 26 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 27 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 28 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 29 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.15 3.78 6.79 -2.39 -0.02 3.76 16 32 H 0.16 3.61 8.14 -2.39 -0.02 3.59 16 33 H 0.07 1.28 7.72 -2.38 -0.02 1.26 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.10 0.67 5.47 -2.39 -0.01 0.66 16 38 H 0.10 0.63 8.13 -2.38 -0.02 0.61 16 39 H 0.06 1.32 7.64 -2.39 -0.02 1.30 16 40 H 0.09 0.84 6.55 -2.39 -0.02 0.82 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.06 1.03 5.68 -2.38 -0.01 1.01 16 47 H 0.10 1.06 5.83 -2.39 -0.01 1.04 16 Total: -1.00 -78.31 366.98 0.18 -78.14 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.87 Total: 14.43 kcal Atomic # 6 Polarization: -61.39 SS G_CDS: 3.26 Total: -58.13 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -1.14 Total: -83.11 kcal Atomic # 8 Polarization: -72.49 SS G_CDS: -4.40 Total: -76.89 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Atomic # 16 Polarization: 80.35 SS G_CDS: -0.30 Total: 80.05 kcal Total: -78.31 0.18 -78.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068897639.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.260 kcal (2) G-P(sol) polarization free energy of solvation -78.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds