Wall clock time and date at job start Tue Mar 31 2020 12:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00151 * 2 1 4 4 H 1.48497 * 109.46925 * 240.00073 * 3 2 1 5 5 H 1.48491 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46579 * 120.00454 * 3 2 1 7 7 C 1.37880 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00399 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47385 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47585 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47383 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54526 * 68.37497 * 12 11 10 14 14 O 1.42103 * 110.53829 * 291.62433 * 12 11 10 15 15 N 1.65605 * 104.44869 * 180.02562 * 12 11 10 16 16 C 1.47425 * 125.64644 * 269.95321 * 15 12 11 17 17 C 1.54905 * 104.82939 * 155.90966 * 16 15 12 18 18 C 1.55155 * 101.58343 * 37.01295 * 17 16 15 19 19 C 1.47024 * 125.64667 * 90.00130 * 15 12 11 20 20 H 1.09000 * 109.88261 * 300.58727 * 19 15 12 21 21 C 1.52997 * 109.88620 * 61.60608 * 19 15 12 22 22 C 1.54886 * 110.75790 * 61.85666 * 21 19 15 23 23 C 1.54269 * 104.19706 * 156.25984 * 22 21 19 24 24 C 1.53873 * 106.59721 * 336.39106 * 23 22 21 25 25 C 1.54269 * 106.59607 * 0.02562 * 24 23 22 26 26 H 0.97000 * 119.99573 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47016 * 60.00694 * 9 7 2 28 28 H 1.09002 * 109.47574 * 300.00476 * 9 7 2 29 29 H 1.09003 * 109.46787 * 60.00174 * 10 9 7 30 30 H 1.08998 * 109.47165 * 300.00921 * 10 9 7 31 31 H 1.09003 * 109.47002 * 60.00201 * 11 10 9 32 32 H 1.09010 * 109.47139 * 300.00382 * 11 10 9 33 33 H 1.08998 * 110.36517 * 274.74862 * 16 15 12 34 34 H 1.08996 * 110.36315 * 37.07039 * 16 15 12 35 35 H 1.08999 * 111.00465 * 155.08721 * 17 16 15 36 36 H 1.08998 * 111.00570 * 278.93794 * 17 16 15 37 37 H 1.09006 * 110.72258 * 206.13556 * 18 17 16 38 38 H 1.08995 * 110.72000 * 82.86075 * 18 17 16 39 39 H 1.09005 * 110.66978 * 298.42211 * 21 19 15 40 40 H 1.09003 * 110.48666 * 37.57894 * 22 21 19 41 41 H 1.09003 * 110.48673 * 274.93981 * 22 21 19 42 42 H 1.08994 * 110.02854 * 217.10414 * 23 22 21 43 43 H 1.09003 * 110.03261 * 95.67577 * 23 22 21 44 44 H 1.08994 * 110.03395 * 119.28488 * 24 23 22 45 45 H 1.09000 * 110.02931 * 240.67238 * 24 23 22 46 46 H 1.09006 * 110.48514 * 142.29462 * 25 24 23 47 47 H 1.09003 * 110.48481 * 264.79778 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 16 2.6588 -6.3659 -0.0004 13 8 3.3547 -6.4265 1.2370 14 8 3.3564 -6.4262 -1.2370 15 7 1.7083 -7.7221 -0.0019 16 6 1.2148 -8.4266 1.1953 17 6 -0.0558 -9.1743 0.7197 18 6 0.3554 -9.6076 -0.7123 19 6 1.2179 -8.4233 -1.1974 20 1 0.6152 -7.7465 -1.8031 21 6 2.4002 -8.9425 -2.0180 22 6 3.2304 -9.9626 -1.1998 23 6 3.9436 -10.8148 -2.2698 24 6 3.1018 -10.7038 -3.5531 25 6 1.9068 -9.7874 -3.2183 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6245 -2.5571 0.8896 29 1 2.8717 -3.6045 0.8895 30 1 2.8719 -3.6044 -0.8904 31 1 0.8538 -5.0446 -0.8914 32 1 0.8531 -5.0451 0.8886 33 1 1.9611 -9.1361 1.5526 34 1 0.9634 -7.7122 1.9792 35 1 -0.2566 -10.0422 1.3479 36 1 -0.9160 -8.5055 0.6936 37 1 -0.5234 -9.7296 -1.3456 38 1 0.9420 -10.5258 -0.6839 39 1 3.0247 -8.1165 -2.3583 40 1 2.5759 -10.5854 -0.5900 41 1 3.9593 -9.4471 -0.5745 42 1 3.9952 -11.8542 -1.9458 43 1 4.9473 -10.4282 -2.4470 44 1 3.6969 -10.2634 -4.3531 45 1 2.7455 -11.6895 -3.8523 46 1 1.6696 -9.1447 -4.0661 47 1 1.0376 -10.3818 -2.9365 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068897645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:05 Heat of formation + Delta-G solvation = -99.097745 kcal Electronic energy + Delta-G solvation = -25516.997147 eV Core-core repulsion = 22018.535656 eV Total energy + Delta-G solvation = -3498.461491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.84890 -37.05386 -36.71937 -35.71304 -34.66092 -32.18182 -31.10019 -30.78500 -28.76113 -27.79413 -26.57560 -23.75702 -22.70762 -21.98025 -20.61612 -20.36561 -19.67262 -18.52751 -17.33625 -16.78822 -16.39487 -16.00693 -15.75249 -15.39976 -14.72836 -14.48875 -14.25833 -14.01033 -13.84989 -13.62956 -13.46087 -12.77312 -12.58023 -12.28895 -12.00246 -11.93961 -11.90130 -11.75764 -11.65757 -11.43859 -11.36035 -11.25503 -11.23188 -11.16114 -10.90212 -10.89572 -10.86946 -10.75740 -10.47322 -10.40443 -10.12772 -9.94780 -9.48222 -9.22143 -8.84420 -8.40554 -6.05672 -4.08862 0.44615 2.78695 3.32179 3.35900 3.39210 4.02258 4.13475 4.30595 4.42415 4.45422 4.50036 4.61154 4.75483 4.78382 5.10095 5.14003 5.18949 5.22115 5.26906 5.30652 5.31443 5.42657 5.46365 5.54928 5.58333 5.62829 5.65983 5.70969 5.79016 5.81529 5.85600 5.89705 5.98037 6.03723 6.08665 6.18754 6.23116 6.29438 6.43335 6.45232 6.52611 6.87237 7.56581 7.66741 7.92215 8.32756 8.97127 9.55765 11.05555 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.003070 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.604660 B = 9117.698157 C = 9452.877852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.106 4.106 11 C -0.610 4.610 12 S 2.611 3.389 13 O -0.959 6.959 14 O -0.953 6.953 15 N -1.011 6.011 16 C 0.123 3.877 17 C -0.133 4.133 18 C -0.129 4.129 19 C 0.161 3.839 20 H 0.075 0.925 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.118 4.118 26 H 0.262 0.738 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 -24.703 -2.649 24.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.742 4.742 12 S 2.709 3.291 13 O -0.950 6.950 14 O -0.944 6.944 15 N -0.847 5.847 16 C -0.002 4.002 17 C -0.171 4.171 18 C -0.167 4.167 19 C 0.055 3.945 20 H 0.093 0.907 21 C -0.144 4.144 22 C -0.155 4.155 23 C -0.163 4.163 24 C -0.161 4.161 25 C -0.156 4.156 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.511 -24.530 -2.632 24.676 hybrid contribution -0.312 1.230 0.018 1.269 sum 0.199 -23.300 -2.614 23.447 Atomic orbital electron populations 1.69950 1.06100 1.26894 1.50521 1.25021 0.94891 0.99365 0.95074 0.86608 0.79576 0.82792 0.78786 1.20090 1.21230 1.20103 1.21222 0.93225 0.90911 1.51193 0.92417 1.19052 0.93508 0.90423 0.97693 1.21496 0.99392 0.91749 1.01867 1.30606 1.16543 1.15963 1.11060 1.05079 0.75454 0.74327 0.74192 1.93561 1.70110 1.85857 1.45439 1.93518 1.70162 1.85597 1.45119 1.58812 1.70631 1.42759 1.12511 1.21926 0.95278 0.96008 0.87021 1.22805 0.97538 1.00368 0.96437 1.22826 0.99357 0.98174 0.96388 1.21243 0.94228 0.93496 0.85562 0.90738 1.22938 0.96959 0.99418 0.95080 1.22423 0.98673 0.96971 0.97421 1.22130 0.99280 0.99586 0.95291 1.22100 0.96844 0.99345 0.97761 1.22396 0.97834 0.97655 0.97725 0.92834 0.96139 0.96167 0.91687 0.91608 0.85547 0.85627 0.91430 0.90742 0.90220 0.90522 0.90393 0.89800 0.86954 0.91226 0.92112 0.92234 0.91965 0.91937 0.92168 0.91583 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 10 C -0.11 -2.19 5.16 -26.74 -0.14 -2.33 16 11 C -0.61 -9.78 6.18 37.15 0.23 -9.56 16 12 S 2.61 40.14 5.64 -107.50 -0.61 39.53 16 13 O -0.96 -17.43 17.61 -57.54 -1.01 -18.45 16 14 O -0.95 -16.54 15.03 -57.54 -0.86 -17.40 16 15 N -1.01 -11.87 3.04 -104.42 -0.32 -12.19 16 16 C 0.12 1.19 6.89 -2.53 -0.02 1.17 16 17 C -0.13 -0.95 7.08 -24.59 -0.17 -1.12 16 18 C -0.13 -0.94 4.86 -24.89 -0.12 -1.07 16 19 C 0.16 1.62 2.99 -66.95 -0.20 1.42 16 20 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 21 C -0.12 -1.35 2.55 -88.65 -0.23 -1.58 16 22 C -0.12 -1.21 5.82 -25.07 -0.15 -1.36 16 23 C -0.13 -1.14 6.80 -25.61 -0.17 -1.32 16 24 C -0.12 -1.04 6.80 -25.61 -0.17 -1.21 16 25 C -0.12 -1.03 6.14 -25.09 -0.15 -1.18 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.13 1.83 8.14 -51.92 -0.42 1.41 16 32 H 0.13 1.82 8.14 -51.92 -0.42 1.40 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 38 H 0.08 0.58 5.43 -51.93 -0.28 0.30 16 39 H 0.11 1.55 5.74 -51.93 -0.30 1.25 16 40 H 0.07 0.62 5.67 -51.93 -0.29 0.32 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.49 6.72 -51.93 -0.35 0.14 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -33.66 372.43 -11.69 -45.35 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -8.37 Total: -1.92 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: -1.85 Total: -31.21 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.42 Total: -38.20 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.88 Total: -35.85 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 40.14 SS G_CDS: -0.61 Total: 39.53 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.66 -11.69 -45.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068897645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.745 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds