Wall clock time and date at job start Tue Mar 31 2020 12:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00151 * 2 1 4 4 H 1.48497 * 109.46925 * 240.00073 * 3 2 1 5 5 H 1.48491 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46579 * 120.00454 * 3 2 1 7 7 C 1.37880 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00399 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47385 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47585 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47383 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54526 * 68.37497 * 12 11 10 14 14 O 1.42103 * 110.53829 * 291.62433 * 12 11 10 15 15 N 1.65605 * 104.44869 * 180.02562 * 12 11 10 16 16 C 1.47425 * 125.64644 * 269.95321 * 15 12 11 17 17 C 1.54905 * 104.82939 * 155.90966 * 16 15 12 18 18 C 1.55155 * 101.58343 * 37.01295 * 17 16 15 19 19 C 1.47024 * 125.64667 * 90.00130 * 15 12 11 20 20 H 1.09000 * 109.88261 * 300.58727 * 19 15 12 21 21 C 1.52997 * 109.88620 * 61.60608 * 19 15 12 22 22 C 1.54886 * 110.75790 * 61.85666 * 21 19 15 23 23 C 1.54269 * 104.19706 * 156.25984 * 22 21 19 24 24 C 1.53873 * 106.59721 * 336.39106 * 23 22 21 25 25 C 1.54269 * 106.59607 * 0.02562 * 24 23 22 26 26 H 0.97000 * 119.99573 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47016 * 60.00694 * 9 7 2 28 28 H 1.09002 * 109.47574 * 300.00476 * 9 7 2 29 29 H 1.09003 * 109.46787 * 60.00174 * 10 9 7 30 30 H 1.08998 * 109.47165 * 300.00921 * 10 9 7 31 31 H 1.09003 * 109.47002 * 60.00201 * 11 10 9 32 32 H 1.09010 * 109.47139 * 300.00382 * 11 10 9 33 33 H 1.08998 * 110.36517 * 274.74862 * 16 15 12 34 34 H 1.08996 * 110.36315 * 37.07039 * 16 15 12 35 35 H 1.08999 * 111.00465 * 155.08721 * 17 16 15 36 36 H 1.08998 * 111.00570 * 278.93794 * 17 16 15 37 37 H 1.09006 * 110.72258 * 206.13556 * 18 17 16 38 38 H 1.08995 * 110.72000 * 82.86075 * 18 17 16 39 39 H 1.09005 * 110.66978 * 298.42211 * 21 19 15 40 40 H 1.09003 * 110.48666 * 37.57894 * 22 21 19 41 41 H 1.09003 * 110.48673 * 274.93981 * 22 21 19 42 42 H 1.08994 * 110.02854 * 217.10414 * 23 22 21 43 43 H 1.09003 * 110.03261 * 95.67577 * 23 22 21 44 44 H 1.08994 * 110.03395 * 119.28488 * 24 23 22 45 45 H 1.09000 * 110.02931 * 240.67238 * 24 23 22 46 46 H 1.09006 * 110.48514 * 142.29462 * 25 24 23 47 47 H 1.09003 * 110.48481 * 264.79778 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 16 2.6588 -6.3659 -0.0004 13 8 3.3547 -6.4265 1.2370 14 8 3.3564 -6.4262 -1.2370 15 7 1.7083 -7.7221 -0.0019 16 6 1.2148 -8.4266 1.1953 17 6 -0.0558 -9.1743 0.7197 18 6 0.3554 -9.6076 -0.7123 19 6 1.2179 -8.4233 -1.1974 20 1 0.6152 -7.7465 -1.8031 21 6 2.4002 -8.9425 -2.0180 22 6 3.2304 -9.9626 -1.1998 23 6 3.9436 -10.8148 -2.2698 24 6 3.1018 -10.7038 -3.5531 25 6 1.9068 -9.7874 -3.2183 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6245 -2.5571 0.8896 29 1 2.8717 -3.6045 0.8895 30 1 2.8719 -3.6044 -0.8904 31 1 0.8538 -5.0446 -0.8914 32 1 0.8531 -5.0451 0.8886 33 1 1.9611 -9.1361 1.5526 34 1 0.9634 -7.7122 1.9792 35 1 -0.2566 -10.0422 1.3479 36 1 -0.9160 -8.5055 0.6936 37 1 -0.5234 -9.7296 -1.3456 38 1 0.9420 -10.5258 -0.6839 39 1 3.0247 -8.1165 -2.3583 40 1 2.5759 -10.5854 -0.5900 41 1 3.9593 -9.4471 -0.5745 42 1 3.9952 -11.8542 -1.9458 43 1 4.9473 -10.4282 -2.4470 44 1 3.6969 -10.2634 -4.3531 45 1 2.7455 -11.6895 -3.8523 46 1 1.6696 -9.1447 -4.0661 47 1 1.0376 -10.3818 -2.9365 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068897645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:04 Heat of formation + Delta-G solvation = -119.704559 kcal Electronic energy + Delta-G solvation = -25517.890725 eV Core-core repulsion = 22018.535656 eV Total energy + Delta-G solvation = -3499.355069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.61048 -38.26706 -37.59313 -37.06546 -36.51096 -34.19949 -31.87189 -31.52649 -29.70629 -29.46342 -27.30758 -25.66358 -23.59551 -22.72656 -22.24905 -21.14787 -20.54636 -19.67612 -18.64302 -18.32846 -17.52683 -17.14216 -16.92315 -16.56763 -16.36743 -15.88175 -15.40277 -14.84441 -14.68056 -14.49495 -14.37347 -14.27846 -14.09661 -13.57547 -13.46526 -13.21267 -13.15903 -13.02561 -12.75890 -12.73758 -12.67005 -12.62480 -12.18631 -12.07433 -12.05317 -11.98237 -11.88080 -11.80712 -11.59747 -11.50309 -11.42351 -11.16392 -11.07548 -10.90107 -10.59954 -9.85266 -8.25165 -6.36848 -0.81098 1.38392 1.41279 1.49306 1.68214 2.37936 2.77963 3.04867 3.08108 3.53005 3.69429 3.71351 3.75955 3.82614 3.92427 4.08690 4.18927 4.32937 4.38571 4.45150 4.57552 4.61414 4.62150 4.70361 4.75523 4.82715 4.86714 4.89663 4.95094 4.99032 5.05199 5.08582 5.11620 5.14533 5.17679 5.28775 5.32499 5.35181 5.40698 5.50945 5.53907 5.57694 5.62547 5.70110 5.75523 6.16163 6.78056 7.32564 8.86262 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.003070 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.604660 B = 9117.698157 C = 9452.877852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.106 4.106 11 C -0.611 4.611 12 S 2.634 3.366 13 O -0.989 6.989 14 O -0.976 6.976 15 N -1.006 6.006 16 C 0.109 3.891 17 C -0.123 4.123 18 C -0.121 4.121 19 C 0.150 3.850 20 H 0.078 0.922 21 C -0.131 4.131 22 C -0.118 4.118 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.113 4.113 26 H 0.266 0.734 27 H 0.003 0.997 28 H 0.002 0.998 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.033 0.967 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.229 -26.471 -2.776 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.731 3.269 13 O -0.980 6.980 14 O -0.967 6.967 15 N -0.845 5.845 16 C -0.016 4.016 17 C -0.162 4.162 18 C -0.159 4.159 19 C 0.045 3.955 20 H 0.096 0.904 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.164 4.164 24 C -0.160 4.160 25 C -0.151 4.151 26 H 0.075 0.925 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.358 -26.289 -2.760 26.436 hybrid contribution -0.055 1.720 0.057 1.722 sum -0.413 -24.569 -2.702 24.721 Atomic orbital electron populations 1.70065 1.07653 1.28054 1.51142 1.25950 0.95843 1.03271 0.94422 0.85517 0.78381 0.78058 0.79248 1.19178 1.20428 1.19203 1.21706 0.93726 0.92520 1.51444 0.92208 1.18940 0.93931 0.91781 0.95857 1.21306 0.98707 0.92600 1.01861 1.30575 1.16853 1.14035 1.12649 1.04127 0.75203 0.74573 0.72953 1.93515 1.71263 1.86497 1.46698 1.93499 1.71158 1.86091 1.45924 1.58496 1.70306 1.41295 1.14355 1.22245 0.96798 0.96238 0.86292 1.22809 0.96000 1.00904 0.96474 1.22846 0.99551 0.96854 0.96673 1.21542 0.94384 0.94706 0.84889 0.90363 1.22895 0.97046 0.98806 0.96361 1.22441 0.98430 0.97077 0.97573 1.22151 0.98583 1.00232 0.95450 1.22116 0.96558 1.00300 0.97041 1.22397 0.98650 0.97474 0.96560 0.92531 0.97897 0.97942 0.91807 0.91650 0.84030 0.84116 0.91150 0.90671 0.87848 0.90102 0.88225 0.88909 0.90550 0.89237 0.94847 0.90499 0.93391 0.92727 0.90168 0.91821 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.56 -32.27 9.11 25.60 0.23 -32.04 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.76 4.97 29.85 0.15 1.90 16 10 C -0.11 -4.50 5.16 30.59 0.16 -4.34 16 11 C -0.61 -19.72 6.18 71.98 0.44 -19.27 16 12 S 2.63 82.10 5.64 -56.49 -0.32 81.78 16 13 O -0.99 -36.60 17.61 -127.65 -2.25 -38.84 16 14 O -0.98 -34.99 15.03 -127.65 -1.92 -36.91 16 15 N -1.01 -22.78 3.04 -484.28 -1.47 -24.25 16 16 C 0.11 1.91 6.89 86.85 0.60 2.51 16 17 C -0.12 -1.34 7.08 31.98 0.23 -1.11 16 18 C -0.12 -1.33 4.86 31.78 0.15 -1.18 16 19 C 0.15 2.78 2.99 45.34 0.14 2.91 16 20 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 21 C -0.13 -2.76 2.55 -9.52 -0.02 -2.78 16 22 C -0.12 -2.33 5.82 31.67 0.18 -2.14 16 23 C -0.13 -2.17 6.80 31.32 0.21 -1.96 16 24 C -0.12 -1.85 6.80 31.32 0.21 -1.64 16 25 C -0.11 -1.74 6.14 31.66 0.19 -1.54 16 26 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 27 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.14 4.08 8.14 -2.39 -0.02 4.07 16 32 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.75 8.13 -2.38 -0.02 0.73 16 38 H 0.09 0.89 5.43 -2.39 -0.01 0.88 16 39 H 0.08 2.18 5.74 -2.38 -0.01 2.17 16 40 H 0.09 1.37 5.67 -2.39 -0.01 1.36 16 41 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.09 0.98 6.72 -2.39 -0.02 0.96 16 Total: -1.00 -74.13 372.43 0.62 -73.51 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.92 Total: 14.08 kcal Atomic # 6 Polarization: -63.35 SS G_CDS: 3.34 Total: -60.01 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -1.19 Total: -80.24 kcal Atomic # 8 Polarization: -71.59 SS G_CDS: -4.17 Total: -75.75 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 82.10 SS G_CDS: -0.32 Total: 81.78 kcal Total: -74.13 0.62 -73.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068897645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.198 kcal (2) G-P(sol) polarization free energy of solvation -74.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds