Wall clock time and date at job start Tue Mar 31 2020 12:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.46844 * 111.00317 * 294.20906 * 11 10 9 13 13 C 1.53042 * 109.52548 * 174.16329 * 12 11 10 14 14 C 1.53118 * 109.27716 * 59.17652 * 13 12 11 15 15 N 1.46501 * 109.52110 * 182.44095 * 14 13 12 16 16 C 1.34643 * 125.81691 * 59.70549 * 15 14 13 17 17 O 1.21684 * 125.16377 * 359.97438 * 16 15 14 18 18 N 1.34635 * 109.67165 * 180.02562 * 16 15 14 19 19 H 0.97007 * 125.81661 * 180.02562 * 18 16 15 20 20 C 1.39278 * 108.36859 * 0.02562 * 18 16 15 21 21 C 1.38653 * 133.33931 * 179.97438 * 20 18 16 22 22 C 1.38124 * 119.85157 * 179.16893 * 21 20 18 23 23 C 1.38438 * 120.27762 * 0.73860 * 22 21 20 24 24 C 1.38110 * 120.28663 * 359.54096 * 23 22 21 25 25 C 1.38669 * 119.84822 * 359.97438 * 24 23 22 26 26 C 1.53113 * 109.16217 * 302.34548 * 14 13 12 27 27 C 1.46848 * 110.99765 * 169.99646 * 11 10 9 28 28 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 30 30 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 31 31 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 32 32 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 33 33 H 1.08998 * 109.45974 * 294.17884 * 12 11 10 34 34 H 1.09003 * 109.46302 * 54.14147 * 12 11 10 35 35 H 1.09005 * 109.49739 * 299.23563 * 13 12 11 36 36 H 1.08995 * 109.53521 * 179.14196 * 13 12 11 37 37 H 1.08998 * 109.52082 * 62.25542 * 14 13 12 38 38 H 1.07998 * 120.07621 * 0.02562 * 21 20 18 39 39 H 1.07997 * 119.86183 * 180.27888 * 22 21 20 40 40 H 1.07996 * 119.85854 * 179.56716 * 23 22 21 41 41 H 1.07991 * 120.07754 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.50807 * 297.71898 * 26 14 13 43 43 H 1.08997 * 109.53546 * 177.61777 * 26 14 13 44 44 H 1.08996 * 109.46418 * 305.85486 * 27 11 10 45 45 H 1.08998 * 109.46343 * 65.82940 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 0.7612 -5.1086 1.2518 13 6 -0.1031 -6.3681 1.1587 14 6 0.7967 -7.5813 0.9078 15 7 -0.0299 -8.7817 0.7598 16 6 -0.9824 -8.9724 -0.1726 17 8 -1.2941 -8.1680 -1.0308 18 7 -1.5384 -10.1879 -0.0105 19 1 -2.2474 -10.5650 -0.5547 20 6 -0.9222 -10.8116 1.0716 21 6 -1.0884 -12.0469 1.6791 22 6 -0.2948 -12.3968 2.7540 23 6 0.6553 -11.5133 3.2370 24 6 0.8243 -10.2784 2.6422 25 6 0.0390 -9.9222 1.5562 26 6 1.6019 -7.3532 -0.3745 27 6 2.4168 -6.0651 -0.2370 28 1 -0.4849 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8719 -3.6044 -0.8895 32 1 2.8719 -3.6043 0.8905 33 1 1.4595 -5.2079 2.0828 34 1 0.1223 -4.2409 1.4162 35 1 -0.8110 -6.2637 0.3364 36 1 -0.6480 -6.5061 2.0926 37 1 1.4788 -7.7090 1.7484 38 1 -1.8273 -12.7395 1.3039 39 1 -0.4211 -13.3607 3.2244 40 1 1.2674 -11.7912 4.0823 41 1 1.5662 -9.5917 3.0220 42 1 0.9209 -7.2643 -1.2209 43 1 2.2756 -8.1946 -0.5363 44 1 2.9803 -5.8923 -1.1539 45 1 3.1073 -6.1600 0.6011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070789121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:29 Heat of formation + Delta-G solvation = 22.969982 kcal Electronic energy + Delta-G solvation = -26109.339864 eV Core-core repulsion = 22513.020427 eV Total energy + Delta-G solvation = -3596.319437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.69932 -38.99594 -38.30658 -36.03543 -35.50477 -33.37872 -32.07118 -30.74484 -30.41245 -29.27469 -28.64271 -25.37229 -23.65105 -23.06645 -22.85863 -22.62727 -21.35635 -20.05590 -19.43944 -18.35537 -17.88611 -16.56674 -16.38789 -16.15886 -15.94370 -14.85501 -14.70218 -14.59643 -14.52477 -14.37015 -14.30808 -13.91409 -13.60637 -13.21108 -13.12364 -12.72088 -12.55035 -12.25908 -11.88676 -11.60413 -11.52014 -11.37383 -11.16313 -11.07194 -10.91749 -10.87900 -10.60306 -10.47696 -10.26515 -10.19125 -9.77170 -9.32319 -9.08639 -8.74518 -8.30038 -8.02400 -7.69224 -5.96439 -3.98976 0.88372 1.06505 2.11111 2.82612 3.09630 3.34058 3.38996 3.40060 3.42901 4.17530 4.35649 4.49193 4.57221 4.60483 4.82592 4.85046 4.92993 5.00808 5.09992 5.13006 5.35546 5.39029 5.40342 5.53933 5.61706 5.67555 5.72328 5.83571 5.87968 5.96058 6.06885 6.14358 6.22475 6.25654 6.34570 6.40422 6.45060 6.52334 6.57837 6.68444 6.99409 7.12464 7.52896 7.60153 7.82574 7.93261 8.12138 8.12796 8.46372 9.08424 9.64434 11.14890 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.002532 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.396609 B =11055.003566 C =11348.854691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.064 3.936 11 N -0.538 5.538 12 C 0.062 3.938 13 C -0.130 4.130 14 C 0.165 3.835 15 N -0.532 5.532 16 C 0.680 3.320 17 O -0.539 6.539 18 N -0.648 5.648 19 H 0.432 0.568 20 C 0.086 3.914 21 C -0.107 4.107 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.107 4.107 25 C 0.097 3.903 26 C -0.129 4.129 27 C 0.062 3.938 28 H 0.260 0.740 29 H 0.025 0.975 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.020 0.980 33 H 0.027 0.973 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 -28.243 6.772 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.062 4.062 11 N -0.263 5.263 12 C -0.067 4.067 13 C -0.168 4.168 14 C 0.064 3.936 15 N -0.253 5.253 16 C 0.381 3.619 17 O -0.413 6.413 18 N -0.294 5.294 19 H 0.274 0.726 20 C -0.017 4.017 21 C -0.128 4.128 22 C -0.136 4.136 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.005 4.005 26 C -0.168 4.168 27 C -0.067 4.067 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.408 -27.334 5.770 27.939 hybrid contribution 0.665 0.678 0.429 1.042 sum 0.257 -26.656 6.199 27.369 Atomic orbital electron populations 1.69978 1.06007 1.26544 1.50629 1.24999 0.94829 0.99166 0.95365 0.86600 0.79769 0.83541 0.78100 1.20651 1.21254 1.19964 1.21189 0.92948 0.91071 1.50853 0.92817 1.19110 0.93983 0.90064 0.97866 1.22322 0.96711 0.88200 0.98975 1.62000 1.27446 1.02431 1.34379 1.22028 0.96735 0.97683 0.90246 1.22032 0.98871 0.92878 1.03058 1.21347 0.91297 0.81542 0.99390 1.45491 1.35591 1.15257 1.29008 1.16034 0.80713 0.82220 0.82916 1.91122 1.66868 1.46727 1.36556 1.43058 1.38700 1.16490 1.31122 0.72635 1.18052 0.96285 0.95429 0.91894 1.20071 1.01844 0.93436 0.97456 1.20838 0.96174 1.00028 0.96532 1.20861 0.98982 0.92935 1.00203 1.20117 1.00110 0.97895 0.94743 1.18179 0.98959 0.87130 0.96213 1.22004 0.99213 0.97424 0.98122 1.21972 0.93729 0.90320 1.00724 0.93009 0.95625 0.96478 0.91985 0.96206 0.95494 0.88774 0.89036 0.91602 0.88941 0.85337 0.85130 0.85083 0.85313 0.89098 0.91763 0.90392 0.95484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 10 C 0.06 1.38 4.90 -3.82 -0.02 1.36 16 11 N -0.54 -10.06 4.66 -234.67 -1.09 -11.16 16 12 C 0.06 1.06 5.29 -3.83 -0.02 1.04 16 13 C -0.13 -1.97 5.43 -26.65 -0.14 -2.12 16 14 C 0.17 2.16 2.83 -67.81 -0.19 1.97 16 15 N -0.53 -6.80 2.67 -111.66 -0.30 -7.10 16 16 C 0.68 9.69 8.23 -87.16 -0.72 8.97 16 17 O -0.54 -9.70 15.44 5.20 0.08 -9.62 16 18 N -0.65 -6.77 6.15 -14.30 -0.09 -6.86 16 19 H 0.43 3.32 8.96 -40.82 -0.37 2.96 16 20 C 0.09 0.82 7.26 -83.80 -0.61 0.22 16 21 C -0.11 -0.73 10.07 -39.47 -0.40 -1.13 16 22 C -0.12 -0.68 10.03 -39.55 -0.40 -1.08 16 23 C -0.11 -0.70 10.03 -39.55 -0.40 -1.10 16 24 C -0.11 -0.89 9.85 -39.47 -0.39 -1.28 16 25 C 0.10 1.03 6.83 -83.80 -0.57 0.46 16 26 C -0.13 -1.79 5.43 -26.65 -0.14 -1.94 16 27 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 31 H 0.06 1.31 7.99 -51.93 -0.41 0.90 16 32 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 1.84 6.21 -51.93 -0.32 1.52 16 35 H 0.09 1.66 6.86 -51.93 -0.36 1.30 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.03 7.49 -51.93 -0.39 0.64 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.91 7.65 -52.49 -0.40 0.51 16 42 H 0.09 1.52 6.88 -51.93 -0.36 1.16 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 45 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -33.94 359.72 -11.53 -45.47 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.70 Total: 0.33 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -4.57 Total: -6.83 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.74 Total: -51.67 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.94 -11.53 -45.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070789121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.442 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds