Wall clock time and date at job start Tue Mar 31 2020 12:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.46844 * 111.00317 * 294.20906 * 11 10 9 13 13 C 1.53042 * 109.52548 * 174.16329 * 12 11 10 14 14 C 1.53118 * 109.27716 * 59.17652 * 13 12 11 15 15 N 1.46501 * 109.52110 * 182.44095 * 14 13 12 16 16 C 1.34643 * 125.81691 * 59.70549 * 15 14 13 17 17 O 1.21684 * 125.16377 * 359.97438 * 16 15 14 18 18 N 1.34635 * 109.67165 * 180.02562 * 16 15 14 19 19 H 0.97007 * 125.81661 * 180.02562 * 18 16 15 20 20 C 1.39278 * 108.36859 * 0.02562 * 18 16 15 21 21 C 1.38653 * 133.33931 * 179.97438 * 20 18 16 22 22 C 1.38124 * 119.85157 * 179.16893 * 21 20 18 23 23 C 1.38438 * 120.27762 * 0.73860 * 22 21 20 24 24 C 1.38110 * 120.28663 * 359.54096 * 23 22 21 25 25 C 1.38669 * 119.84822 * 359.97438 * 24 23 22 26 26 C 1.53113 * 109.16217 * 302.34548 * 14 13 12 27 27 C 1.46848 * 110.99765 * 169.99646 * 11 10 9 28 28 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 30 30 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 31 31 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 32 32 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 33 33 H 1.08998 * 109.45974 * 294.17884 * 12 11 10 34 34 H 1.09003 * 109.46302 * 54.14147 * 12 11 10 35 35 H 1.09005 * 109.49739 * 299.23563 * 13 12 11 36 36 H 1.08995 * 109.53521 * 179.14196 * 13 12 11 37 37 H 1.08998 * 109.52082 * 62.25542 * 14 13 12 38 38 H 1.07998 * 120.07621 * 0.02562 * 21 20 18 39 39 H 1.07997 * 119.86183 * 180.27888 * 22 21 20 40 40 H 1.07996 * 119.85854 * 179.56716 * 23 22 21 41 41 H 1.07991 * 120.07754 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.50807 * 297.71898 * 26 14 13 43 43 H 1.08997 * 109.53546 * 177.61777 * 26 14 13 44 44 H 1.08996 * 109.46418 * 305.85486 * 27 11 10 45 45 H 1.08998 * 109.46343 * 65.82940 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 0.7612 -5.1086 1.2518 13 6 -0.1031 -6.3681 1.1587 14 6 0.7967 -7.5813 0.9078 15 7 -0.0299 -8.7817 0.7598 16 6 -0.9824 -8.9724 -0.1726 17 8 -1.2941 -8.1680 -1.0308 18 7 -1.5384 -10.1879 -0.0105 19 1 -2.2474 -10.5650 -0.5547 20 6 -0.9222 -10.8116 1.0716 21 6 -1.0884 -12.0469 1.6791 22 6 -0.2948 -12.3968 2.7540 23 6 0.6553 -11.5133 3.2370 24 6 0.8243 -10.2784 2.6422 25 6 0.0390 -9.9222 1.5562 26 6 1.6019 -7.3532 -0.3745 27 6 2.4168 -6.0651 -0.2370 28 1 -0.4849 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8719 -3.6044 -0.8895 32 1 2.8719 -3.6043 0.8905 33 1 1.4595 -5.2079 2.0828 34 1 0.1223 -4.2409 1.4162 35 1 -0.8110 -6.2637 0.3364 36 1 -0.6480 -6.5061 2.0926 37 1 1.4788 -7.7090 1.7484 38 1 -1.8273 -12.7395 1.3039 39 1 -0.4211 -13.3607 3.2244 40 1 1.2674 -11.7912 4.0823 41 1 1.5662 -9.5917 3.0220 42 1 0.9209 -7.2643 -1.2209 43 1 2.2756 -8.1946 -0.5363 44 1 2.9803 -5.8923 -1.1539 45 1 3.1073 -6.1600 0.6011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070789121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:28 Heat of formation + Delta-G solvation = 0.645734 kcal Electronic energy + Delta-G solvation = -26110.307916 eV Core-core repulsion = 22513.020427 eV Total energy + Delta-G solvation = -3597.287489 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.54129 -40.17418 -39.24599 -37.01429 -36.64219 -35.22732 -33.52431 -32.02094 -31.30368 -30.55814 -29.64699 -26.96811 -25.24606 -24.32993 -23.62376 -23.34596 -22.61708 -21.69571 -20.60292 -19.11997 -18.67624 -18.55239 -17.36012 -17.18984 -16.95561 -16.55987 -16.13979 -16.06203 -15.40865 -15.26057 -15.23451 -14.89562 -14.86822 -14.49782 -14.30857 -14.07673 -14.00410 -13.27276 -13.23375 -13.14155 -12.86947 -12.70278 -12.49124 -12.36351 -12.26539 -12.08238 -11.89855 -11.84014 -11.76431 -11.38905 -11.34084 -11.20915 -11.08308 -10.54117 -9.36728 -9.15304 -8.82128 -8.19990 -6.31919 0.30148 0.46658 1.22007 1.39527 1.41830 1.52670 1.81125 2.33945 2.39947 2.83253 3.01306 3.13223 3.46541 3.56242 3.68313 3.89669 4.00414 4.08979 4.23230 4.25047 4.29741 4.42616 4.46329 4.46905 4.50922 4.53199 4.63035 4.66959 4.75979 4.90871 4.95381 4.98862 5.07902 5.09074 5.13868 5.22220 5.42942 5.46141 5.58369 5.63262 5.65779 5.78234 5.84898 5.90497 6.09918 6.31212 6.33252 6.34507 6.85984 7.16523 7.37336 8.92384 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.002532 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.396609 B =11055.003566 C =11348.854691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.035 3.965 10 C 0.082 3.918 11 N -0.561 5.561 12 C 0.066 3.934 13 C -0.119 4.119 14 C 0.171 3.829 15 N -0.532 5.532 16 C 0.665 3.335 17 O -0.594 6.594 18 N -0.637 5.637 19 H 0.441 0.559 20 C 0.067 3.933 21 C -0.104 4.104 22 C -0.107 4.107 23 C -0.104 4.104 24 C -0.112 4.112 25 C 0.066 3.934 26 C -0.120 4.120 27 C 0.064 3.936 28 H 0.263 0.737 29 H -0.016 1.016 30 H -0.005 1.005 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -30.819 9.034 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.003 4.003 10 C -0.045 4.045 11 N -0.286 5.286 12 C -0.062 4.062 13 C -0.158 4.158 14 C 0.069 3.931 15 N -0.253 5.253 16 C 0.366 3.634 17 O -0.472 6.472 18 N -0.283 5.283 19 H 0.284 0.716 20 C -0.034 4.034 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.133 4.133 25 C -0.035 4.035 26 C -0.158 4.158 27 C -0.064 4.064 28 H 0.072 0.928 29 H 0.002 0.998 30 H 0.013 0.987 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.142 0.858 38 H 0.170 0.830 39 H 0.181 0.819 40 H 0.178 0.822 41 H 0.159 0.841 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.860 -29.993 8.071 31.116 hybrid contribution -0.089 1.293 -0.186 1.310 sum 1.771 -28.700 7.885 29.816 Atomic orbital electron populations 1.70136 1.07991 1.27751 1.51561 1.26028 0.95747 1.03550 0.94676 0.85388 0.78677 0.78131 0.78466 1.19884 1.20785 1.18358 1.21635 0.93614 0.92114 1.50709 0.91821 1.18943 0.94283 0.92277 0.94786 1.21935 0.95215 0.87845 0.99467 1.61857 1.28519 1.02648 1.35604 1.21923 0.96693 0.97176 0.90423 1.21863 0.98363 0.93400 1.02173 1.21250 0.91006 0.80924 0.99899 1.45321 1.35114 1.15758 1.29132 1.16273 0.81358 0.82819 0.82931 1.91072 1.68689 1.48651 1.38826 1.42902 1.38492 1.15420 1.31490 0.71563 1.18397 0.96579 0.96538 0.91936 1.20463 1.02257 0.92524 0.97261 1.21318 0.94775 1.01092 0.95430 1.21293 0.98807 0.91912 1.00331 1.20420 0.99935 0.99003 0.93970 1.18538 1.00817 0.86578 0.97538 1.21888 0.98869 0.97686 0.97366 1.22031 0.93531 0.89066 1.01816 0.92827 0.99766 0.98688 0.91720 0.95223 0.93194 0.92386 0.92860 0.90276 0.85822 0.82960 0.81856 0.82165 0.84093 0.92637 0.89239 0.90144 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.11 13.29 21.45 0.28 -58.83 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.93 4.90 29.85 0.15 2.07 16 10 C 0.08 3.61 4.90 86.31 0.42 4.03 16 11 N -0.56 -21.61 4.66 -896.35 -4.17 -25.78 16 12 C 0.07 2.35 5.29 86.33 0.46 2.81 16 13 C -0.12 -3.78 5.43 30.65 0.17 -3.61 16 14 C 0.17 4.38 2.83 45.07 0.13 4.50 16 15 N -0.53 -13.56 2.67 -625.46 -1.67 -15.23 16 16 C 0.66 19.90 8.23 179.14 1.47 21.37 16 17 O -0.59 -23.28 15.44 -4.30 -0.07 -23.35 16 18 N -0.64 -13.50 6.15 -317.46 -1.95 -15.45 16 19 H 0.44 7.00 8.96 -92.70 -0.83 6.17 16 20 C 0.07 1.19 7.26 38.39 0.28 1.46 16 21 C -0.10 -1.10 10.07 22.34 0.22 -0.87 16 22 C -0.11 -0.77 10.03 22.29 0.22 -0.55 16 23 C -0.10 -0.86 10.03 22.29 0.22 -0.64 16 24 C -0.11 -1.50 9.85 22.34 0.22 -1.28 16 25 C 0.07 1.29 6.83 38.40 0.26 1.55 16 26 C -0.12 -3.30 5.43 30.65 0.17 -3.13 16 27 C 0.06 1.86 5.46 86.33 0.47 2.33 16 28 H 0.26 15.60 8.31 -92.71 -0.77 14.82 16 29 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 30 H -0.01 -0.31 6.43 -2.39 -0.02 -0.32 16 31 H 0.06 2.76 7.99 -2.39 -0.02 2.74 16 32 H 0.03 1.23 8.12 -2.39 -0.02 1.21 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 2.45 6.21 -2.39 -0.01 2.44 16 35 H 0.05 2.11 6.86 -2.38 -0.02 2.10 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.12 2.40 7.49 -2.39 -0.02 2.39 16 38 H 0.15 0.83 8.06 -2.91 -0.02 0.80 16 39 H 0.16 0.16 8.06 -2.91 -0.02 0.13 16 40 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 41 H 0.14 1.47 7.65 -2.92 -0.02 1.45 16 42 H 0.05 1.96 6.88 -2.39 -0.02 1.94 16 43 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.08 2.31 8.02 -2.39 -0.02 2.29 16 45 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -79.22 359.72 0.18 -79.04 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.17 Total: 13.46 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.56 Total: -1.15 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -7.51 Total: -115.29 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.07 Total: -23.35 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -79.22 0.18 -79.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070789121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.686 kcal (2) G-P(sol) polarization free energy of solvation -79.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds