Wall clock time and date at job start Tue Mar 31 2020 12:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86808 * 119.99664 * 2 1 4 4 H 1.48503 * 109.46857 * 239.99761 * 3 2 1 5 5 H 1.48500 * 109.47063 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46914 * 119.99486 * 3 2 1 7 7 C 1.38945 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00047 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00382 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00107 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47159 * 173.17350 * 12 10 9 14 14 C 1.46697 * 111.00891 * 297.56848 * 13 12 10 15 15 C 1.53366 * 108.27405 * 174.17217 * 14 13 12 16 16 N 1.46714 * 108.30186 * 293.30744 * 15 14 13 17 17 C 1.46905 * 111.00143 * 174.18217 * 16 15 14 18 18 C 1.53006 * 109.46889 * 290.72881 * 17 16 15 19 19 C 1.52999 * 117.49655 * 243.17436 * 18 17 16 20 20 C 1.52997 * 117.49589 * 174.54955 * 18 17 16 21 21 C 1.39932 * 112.12374 * 49.40285 * 16 15 14 22 22 C 1.39215 * 117.93293 * 162.13114 * 21 16 15 23 23 C 1.38041 * 120.39832 * 179.76419 * 22 21 16 24 24 C 1.38255 * 120.02752 * 359.95459 * 23 22 21 25 25 C 1.38046 * 120.01493 * 0.13537 * 24 23 22 26 26 C 1.38955 * 122.48528 * 342.06943 * 21 16 15 27 27 H 0.97003 * 120.00532 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99837 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47078 * 53.16714 * 12 10 9 30 30 H 1.08999 * 109.46964 * 293.17386 * 12 10 9 31 31 H 1.09005 * 109.66085 * 54.50061 * 14 13 12 32 32 H 1.08998 * 109.73525 * 293.89542 * 14 13 12 33 33 H 1.08997 * 109.70634 * 173.58627 * 15 14 13 34 34 H 1.09004 * 109.70370 * 53.01866 * 15 14 13 35 35 H 1.08999 * 109.47176 * 50.72598 * 17 16 15 36 36 H 1.08994 * 109.47337 * 170.72782 * 17 16 15 37 37 H 1.08999 * 115.55049 * 28.88332 * 18 17 16 38 38 H 1.09000 * 117.49729 * 0.02562 * 19 18 17 39 39 H 1.08999 * 117.49622 * 145.01813 * 19 18 17 40 40 H 1.08996 * 117.49970 * 214.97637 * 20 18 17 41 41 H 1.08995 * 117.50204 * 0.02562 * 20 18 17 42 42 H 1.08004 * 119.80020 * 359.74394 * 22 21 16 43 43 H 1.08002 * 119.98617 * 179.97438 * 23 22 21 44 44 H 1.07997 * 119.99409 * 180.11603 * 24 23 22 45 45 H 1.08005 * 119.79653 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1016 1.6966 1.2126 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0000 13 7 2.1902 -5.9744 -0.1645 14 6 2.8849 -5.8873 -1.4537 15 6 3.9552 -6.9848 -1.4983 16 7 4.9784 -6.6716 -0.4946 17 6 5.9630 -7.7569 -0.3901 18 6 5.3024 -8.9861 0.2374 19 6 5.8420 -9.4670 1.5859 20 6 6.1305 -10.2702 0.3159 21 6 4.4194 -6.3797 0.7545 22 6 5.2498 -6.4382 1.8704 23 6 4.7526 -6.1551 3.1267 24 6 3.4230 -5.8102 3.2829 25 6 2.5910 -5.7512 2.1830 26 6 3.0819 -6.0375 0.9120 27 1 -0.4851 0.8400 -0.0004 28 1 0.3535 -2.3907 0.0005 29 1 0.5291 -4.8694 -0.8229 30 1 0.7117 -4.9756 0.9445 31 1 3.3569 -4.9095 -1.5506 32 1 2.1732 -6.0346 -2.2660 33 1 4.4091 -7.0155 -2.4888 34 1 3.5017 -7.9499 -1.2720 35 1 6.3316 -8.0101 -1.3841 36 1 6.7956 -7.4332 0.2345 37 1 4.2321 -9.0876 0.0580 38 1 6.6673 -8.9074 2.0262 39 1 5.1266 -9.8849 2.2941 40 1 5.6048 -11.2165 0.1888 41 1 7.1459 -10.2393 -0.0790 42 1 6.2892 -6.7069 1.7524 43 1 5.4027 -6.2029 3.9878 44 1 3.0350 -5.5870 4.2658 45 1 1.5529 -5.4809 2.3090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072696291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:07 Heat of formation + Delta-G solvation = 51.436446 kcal Electronic energy + Delta-G solvation = -27324.530331 eV Core-core repulsion = 23729.445292 eV Total energy + Delta-G solvation = -3595.085039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91711 -38.64924 -37.40769 -36.24632 -35.21722 -33.79081 -31.30677 -30.23921 -29.68771 -29.21159 -26.50299 -24.83502 -24.01078 -23.42364 -22.53530 -21.78278 -20.51887 -19.29241 -19.04208 -17.91695 -17.38960 -16.41983 -16.19695 -15.65238 -15.46156 -14.67787 -14.52168 -14.45944 -14.33122 -13.95920 -13.74842 -13.37216 -13.09001 -13.05919 -12.66799 -12.59159 -12.08184 -11.77479 -11.72859 -11.66181 -11.50630 -11.43048 -11.31720 -10.99969 -10.79315 -10.56893 -10.45346 -10.37204 -10.22638 -10.06145 -9.75188 -9.50533 -9.33350 -8.52635 -7.97379 -7.70041 -6.84254 -6.43044 -3.84230 1.89703 1.92350 3.18530 3.24681 3.29535 3.62550 3.84502 3.85817 4.08041 4.16695 4.45808 4.62587 4.79072 4.84591 4.93640 5.04713 5.09901 5.18318 5.26822 5.32094 5.43413 5.48877 5.52575 5.57603 5.63736 5.71899 5.75933 5.77490 5.80141 5.85030 5.97310 5.98724 6.07531 6.15936 6.22495 6.27712 6.40114 6.45272 6.67149 7.01293 7.08527 7.10627 7.39470 7.45951 7.53407 7.82310 8.02212 8.57485 9.15240 9.50393 10.01199 10.73413 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021666 B = 0.003691 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.025687 B = 7584.243184 C = 7828.078920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.557 5.557 10 C 0.408 3.592 11 O -0.574 6.574 12 C 0.037 3.963 13 N -0.472 5.472 14 C 0.036 3.964 15 C 0.056 3.944 16 N -0.480 5.480 17 C 0.086 3.914 18 C -0.182 4.182 19 C -0.166 4.166 20 C -0.180 4.180 21 C 0.100 3.900 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.133 4.133 26 C 0.120 3.880 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.119 -17.496 0.851 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.193 5.193 10 C 0.192 3.808 11 O -0.459 6.459 12 C -0.093 4.093 13 N -0.186 5.186 14 C -0.091 4.091 15 C -0.071 4.071 16 N -0.194 5.194 17 C -0.040 4.040 18 C -0.202 4.202 19 C -0.203 4.203 20 C -0.218 4.218 21 C 0.001 3.999 22 C -0.146 4.146 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.154 4.154 26 C 0.020 3.980 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.744 -17.341 0.514 18.613 hybrid contribution -0.327 1.052 0.253 1.130 sum 6.417 -16.289 0.767 17.524 Atomic orbital electron populations 1.69597 1.05928 1.28319 1.50318 1.25253 0.95606 0.99714 0.97199 0.85940 0.78807 0.80509 0.79118 1.19907 1.20938 1.19870 1.19651 0.93322 0.82278 1.47590 0.88048 1.41918 1.09152 1.04693 1.63539 1.20684 0.89002 0.85715 0.85366 1.90579 1.13305 1.86530 1.55500 1.22278 0.95131 0.87952 1.03964 1.59345 1.17511 1.39692 1.02043 1.22526 0.95407 1.01014 0.90137 1.22278 0.91590 0.97667 0.95554 1.58986 1.16211 1.38035 1.06163 1.21938 0.94518 0.86532 1.01049 1.23001 0.99749 0.95842 1.01599 1.22962 1.03188 1.03415 0.90769 1.22923 1.00942 0.95162 1.02750 1.18282 0.90354 1.02578 0.88707 1.20695 0.98516 1.03835 0.91564 1.20655 0.95538 1.02707 0.96454 1.20711 0.93972 1.01558 0.97912 1.20816 0.99932 1.03220 0.91419 1.18369 0.88879 0.99657 0.91088 0.91778 0.77487 0.88841 0.88465 0.89128 0.90000 0.89547 0.93074 0.90092 0.89969 0.87834 0.88740 0.89071 0.89133 0.88871 0.86666 0.86970 0.86833 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -13.95 5.29 -10.97 -0.06 -14.01 16 10 C 0.41 9.42 6.80 -10.99 -0.07 9.34 16 11 O -0.57 -15.14 12.54 5.55 0.07 -15.07 16 12 C 0.04 0.65 5.43 -4.98 -0.03 0.63 16 13 N -0.47 -8.18 4.83 -172.22 -0.83 -9.01 16 14 C 0.04 0.59 5.43 -3.75 -0.02 0.57 16 15 C 0.06 0.79 5.55 -3.74 -0.02 0.77 16 16 N -0.48 -7.42 4.84 -170.84 -0.83 -8.24 16 17 C 0.09 1.01 5.14 -3.82 -0.02 0.99 16 18 C -0.18 -1.98 4.34 -90.62 -0.39 -2.38 16 19 C -0.17 -1.65 8.92 -26.73 -0.24 -1.89 16 20 C -0.18 -1.58 10.25 -26.73 -0.27 -1.85 16 21 C 0.10 1.73 4.96 -83.53 -0.41 1.31 16 22 C -0.13 -1.98 7.53 -39.29 -0.30 -2.27 16 23 C -0.13 -2.06 10.04 -39.65 -0.40 -2.45 16 24 C -0.12 -1.98 10.04 -39.65 -0.40 -2.38 16 25 C -0.13 -2.37 8.79 -39.29 -0.35 -2.71 16 26 C 0.12 2.20 3.91 -83.53 -0.33 1.88 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.10 1.60 5.98 -51.93 -0.31 1.29 16 31 H 0.09 1.88 5.74 -51.93 -0.30 1.58 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.68 6.41 -51.93 -0.33 0.35 16 35 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.08 0.95 6.08 -51.93 -0.32 0.63 16 37 H 0.10 1.30 6.59 -51.93 -0.34 0.96 16 38 H 0.09 0.90 7.52 -51.93 -0.39 0.51 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.12 1.59 5.51 -52.48 -0.29 1.30 16 43 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.12 1.99 5.98 -52.48 -0.31 1.67 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -31.37 349.95 -10.39 -41.76 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -6.23 Total: 15.15 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -3.49 Total: -8.35 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.99 Total: -54.96 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.07 Total: -15.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.37 -10.39 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072696291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.194 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds