Wall clock time and date at job start Tue Mar 31 2020 12:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86808 * 119.99664 * 2 1 4 4 H 1.48503 * 109.46857 * 239.99761 * 3 2 1 5 5 H 1.48500 * 109.47063 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46914 * 119.99486 * 3 2 1 7 7 C 1.38945 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00047 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00382 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00107 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47159 * 173.17350 * 12 10 9 14 14 C 1.46697 * 111.00891 * 297.56848 * 13 12 10 15 15 C 1.53366 * 108.27405 * 174.17217 * 14 13 12 16 16 N 1.46714 * 108.30186 * 293.30744 * 15 14 13 17 17 C 1.46905 * 111.00143 * 174.18217 * 16 15 14 18 18 C 1.53006 * 109.46889 * 290.72881 * 17 16 15 19 19 C 1.52999 * 117.49655 * 243.17436 * 18 17 16 20 20 C 1.52997 * 117.49589 * 174.54955 * 18 17 16 21 21 C 1.39932 * 112.12374 * 49.40285 * 16 15 14 22 22 C 1.39215 * 117.93293 * 162.13114 * 21 16 15 23 23 C 1.38041 * 120.39832 * 179.76419 * 22 21 16 24 24 C 1.38255 * 120.02752 * 359.95459 * 23 22 21 25 25 C 1.38046 * 120.01493 * 0.13537 * 24 23 22 26 26 C 1.38955 * 122.48528 * 342.06943 * 21 16 15 27 27 H 0.97003 * 120.00532 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99837 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47078 * 53.16714 * 12 10 9 30 30 H 1.08999 * 109.46964 * 293.17386 * 12 10 9 31 31 H 1.09005 * 109.66085 * 54.50061 * 14 13 12 32 32 H 1.08998 * 109.73525 * 293.89542 * 14 13 12 33 33 H 1.08997 * 109.70634 * 173.58627 * 15 14 13 34 34 H 1.09004 * 109.70370 * 53.01866 * 15 14 13 35 35 H 1.08999 * 109.47176 * 50.72598 * 17 16 15 36 36 H 1.08994 * 109.47337 * 170.72782 * 17 16 15 37 37 H 1.08999 * 115.55049 * 28.88332 * 18 17 16 38 38 H 1.09000 * 117.49729 * 0.02562 * 19 18 17 39 39 H 1.08999 * 117.49622 * 145.01813 * 19 18 17 40 40 H 1.08996 * 117.49970 * 214.97637 * 20 18 17 41 41 H 1.08995 * 117.50204 * 0.02562 * 20 18 17 42 42 H 1.08004 * 119.80020 * 359.74394 * 22 21 16 43 43 H 1.08002 * 119.98617 * 179.97438 * 23 22 21 44 44 H 1.07997 * 119.99409 * 180.11603 * 24 23 22 45 45 H 1.08005 * 119.79653 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1016 1.6966 1.2126 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0000 13 7 2.1902 -5.9744 -0.1645 14 6 2.8849 -5.8873 -1.4537 15 6 3.9552 -6.9848 -1.4983 16 7 4.9784 -6.6716 -0.4946 17 6 5.9630 -7.7569 -0.3901 18 6 5.3024 -8.9861 0.2374 19 6 5.8420 -9.4670 1.5859 20 6 6.1305 -10.2702 0.3159 21 6 4.4194 -6.3797 0.7545 22 6 5.2498 -6.4382 1.8704 23 6 4.7526 -6.1551 3.1267 24 6 3.4230 -5.8102 3.2829 25 6 2.5910 -5.7512 2.1830 26 6 3.0819 -6.0375 0.9120 27 1 -0.4851 0.8400 -0.0004 28 1 0.3535 -2.3907 0.0005 29 1 0.5291 -4.8694 -0.8229 30 1 0.7117 -4.9756 0.9445 31 1 3.3569 -4.9095 -1.5506 32 1 2.1732 -6.0346 -2.2660 33 1 4.4091 -7.0155 -2.4888 34 1 3.5017 -7.9499 -1.2720 35 1 6.3316 -8.0101 -1.3841 36 1 6.7956 -7.4332 0.2345 37 1 4.2321 -9.0876 0.0580 38 1 6.6673 -8.9074 2.0262 39 1 5.1266 -9.8849 2.2941 40 1 5.6048 -11.2165 0.1888 41 1 7.1459 -10.2393 -0.0790 42 1 6.2892 -6.7069 1.7524 43 1 5.4027 -6.2029 3.9878 44 1 3.0350 -5.5870 4.2658 45 1 1.5529 -5.4809 2.3090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072696291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:06 Heat of formation + Delta-G solvation = 30.699908 kcal Electronic energy + Delta-G solvation = -27325.429535 eV Core-core repulsion = 23729.445292 eV Total energy + Delta-G solvation = -3595.984243 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.18248 -40.18613 -38.58204 -37.53200 -36.44229 -35.70805 -33.31070 -31.46805 -30.93668 -30.51813 -27.94817 -26.34542 -25.47544 -24.64900 -23.36119 -22.86016 -21.71850 -20.87794 -20.33124 -19.86764 -18.62371 -18.03427 -17.38481 -16.91390 -16.80096 -16.34654 -15.90062 -15.85252 -15.52212 -15.34669 -15.11279 -14.83665 -14.70018 -14.28761 -13.77011 -13.69102 -13.61396 -13.33309 -13.08749 -12.88062 -12.77595 -12.64969 -12.54538 -12.45603 -12.31448 -12.15352 -12.01183 -11.69325 -11.50921 -11.33048 -11.07517 -10.86141 -10.59757 -10.20930 -9.97172 -9.00188 -8.48752 -8.12509 -5.95866 0.62306 0.66183 1.36292 1.38567 1.49190 2.02271 2.27694 2.60471 2.81549 3.00635 3.13599 3.18729 3.31423 3.69923 3.84497 3.89465 3.99447 4.09064 4.16473 4.24692 4.27492 4.38788 4.41471 4.45595 4.51339 4.56591 4.57940 4.64086 4.70074 4.81239 4.82947 4.90311 4.99905 5.05129 5.10767 5.16147 5.29029 5.29766 5.39017 5.44296 5.76355 5.80579 5.90310 5.98516 6.14945 6.24026 6.55893 6.58405 7.11360 7.53983 8.09628 8.68945 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021666 B = 0.003691 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.025687 B = 7584.243184 C = 7828.078920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.329 4.329 8 H 0.074 0.926 9 N -0.569 5.569 10 C 0.413 3.587 11 O -0.607 6.607 12 C 0.045 3.955 13 N -0.463 5.463 14 C 0.034 3.966 15 C 0.061 3.939 16 N -0.500 5.500 17 C 0.088 3.912 18 C -0.191 4.191 19 C -0.171 4.171 20 C -0.160 4.160 21 C 0.092 3.908 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.154 4.154 26 C 0.088 3.912 27 H 0.278 0.722 28 H 0.395 0.605 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.133 0.867 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -18.683 0.859 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.200 1.200 7 C -0.459 4.459 8 H 0.092 0.908 9 N -0.207 5.207 10 C 0.199 3.801 11 O -0.493 6.493 12 C -0.084 4.084 13 N -0.177 5.177 14 C -0.093 4.093 15 C -0.065 4.065 16 N -0.214 5.214 17 C -0.037 4.037 18 C -0.211 4.211 19 C -0.208 4.208 20 C -0.197 4.197 21 C -0.008 4.008 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.175 4.175 26 C -0.012 4.012 27 H 0.087 0.913 28 H 0.229 0.771 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.064 0.936 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.150 0.850 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.534 -18.558 0.520 20.036 hybrid contribution -0.497 1.339 0.261 1.452 sum 7.037 -17.219 0.781 18.617 Atomic orbital electron populations 1.69655 1.06716 1.29311 1.50295 1.25967 0.96489 1.02212 0.96358 0.85063 0.77848 0.77049 0.78832 1.19816 1.19317 1.19955 1.19543 0.92447 0.84126 1.49798 0.90779 1.41972 1.09218 1.04715 1.64749 1.21632 0.88847 0.86803 0.82796 1.90557 1.15202 1.87395 1.56128 1.22313 0.95162 0.85110 1.05862 1.59488 1.17504 1.38535 1.02221 1.22543 0.96539 0.99612 0.90590 1.22302 0.90916 0.96928 0.96352 1.58994 1.16893 1.39811 1.05667 1.22000 0.93601 0.85871 1.02228 1.22797 0.98903 0.96694 1.02682 1.22997 1.03195 1.03820 0.90758 1.23001 1.01252 0.94377 1.01076 1.18568 0.90266 1.02019 0.89897 1.20990 0.99323 1.03692 0.91471 1.21043 0.95595 1.01254 0.97371 1.21030 0.94473 1.01700 0.98447 1.21048 1.00442 1.03921 0.92060 1.18641 0.89848 1.01240 0.91431 0.91292 0.77085 0.86291 0.86895 0.93601 0.87749 0.87413 0.92077 0.88429 0.89760 0.89690 0.88251 0.89551 0.88319 0.87379 0.84869 0.84154 0.84951 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 8 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 9 N -0.57 -29.27 5.29 -307.00 -1.62 -30.89 16 10 C 0.41 19.53 6.80 87.66 0.60 20.13 16 11 O -0.61 -33.08 12.54 -3.06 -0.04 -33.12 16 12 C 0.05 1.61 5.43 85.56 0.46 2.08 16 13 N -0.46 -15.97 4.83 -698.77 -3.38 -19.35 16 14 C 0.03 1.11 5.43 86.46 0.47 1.58 16 15 C 0.06 1.67 5.55 86.46 0.48 2.15 16 16 N -0.50 -15.07 4.84 -694.41 -3.36 -18.43 16 17 C 0.09 1.93 5.14 86.30 0.44 2.37 16 18 C -0.19 -3.83 4.34 -10.79 -0.05 -3.88 16 19 C -0.17 -3.06 8.92 30.60 0.27 -2.79 16 20 C -0.16 -2.38 10.25 30.60 0.31 -2.06 16 21 C 0.09 3.16 4.96 38.25 0.19 3.35 16 22 C -0.13 -4.10 7.53 22.46 0.17 -3.93 16 23 C -0.13 -3.93 10.04 22.23 0.22 -3.71 16 24 C -0.14 -4.38 10.04 22.23 0.22 -4.16 16 25 C -0.15 -5.51 8.79 22.46 0.20 -5.31 16 26 C 0.09 3.24 3.91 38.26 0.15 3.39 16 27 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 29 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 30 H 0.11 3.67 5.98 -2.39 -0.01 3.66 16 31 H 0.05 1.95 5.74 -2.38 -0.01 1.93 16 32 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.06 1.55 6.41 -2.38 -0.02 1.53 16 35 H 0.10 1.77 8.09 -2.39 -0.02 1.75 16 36 H 0.08 1.78 6.08 -2.39 -0.01 1.76 16 37 H 0.08 2.05 6.59 -2.39 -0.02 2.04 16 38 H 0.10 1.67 7.52 -2.39 -0.02 1.65 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.13 3.47 5.51 -2.91 -0.02 3.45 16 43 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 44 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 45 H 0.12 4.04 5.98 -2.91 -0.02 4.03 16 Total: -1.00 -69.16 349.95 -0.37 -69.53 By element: Atomic # 1 Polarization: 44.83 SS G_CDS: 0.29 Total: 45.12 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 5.43 Total: -8.94 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -8.08 Total: -118.26 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.04 Total: -33.12 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -69.16 -0.37 -69.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072696291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.231 kcal (2) G-P(sol) polarization free energy of solvation -69.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds