Wall clock time and date at job start Tue Mar 31 2020 12:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99878 * 2 1 4 4 H 1.48501 * 109.47091 * 240.00312 * 3 2 1 5 5 H 1.48498 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46620 * 120.00602 * 3 2 1 7 7 C 1.37876 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99701 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46948 * 179.97438 * 9 7 2 11 11 C 1.35036 * 125.92781 * 124.99754 * 10 9 7 12 12 C 1.35082 * 107.98287 * 179.74522 * 11 10 9 13 13 C 1.50698 * 126.08157 * 180.24726 * 12 11 10 14 14 N 1.46906 * 109.47076 * 256.70902 * 13 12 11 15 15 C 1.46899 * 110.99583 * 184.65319 * 14 13 12 16 16 C 1.53007 * 109.46812 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47215 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47108 * 180.02562 * 17 16 15 19 19 C 1.40856 * 107.84323 * 0.37382 * 12 11 10 20 20 C 1.48419 * 126.03498 * 179.88739 * 19 12 11 21 21 C 1.39328 * 120.12195 * 42.63760 * 20 19 12 22 22 C 1.38018 * 119.88052 * 179.97438 * 21 20 19 23 23 C 1.38325 * 120.11942 * 359.97438 * 22 21 20 24 24 C 1.38316 * 120.23951 * 0.02562 * 23 22 21 25 25 C 1.38024 * 120.12202 * 359.97438 * 24 23 22 26 26 N 1.31615 * 107.92478 * 359.62429 * 19 12 11 27 27 H 0.97002 * 119.99705 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47491 * 60.00556 * 9 7 2 29 29 H 1.09001 * 109.47371 * 300.00031 * 9 7 2 30 30 H 1.08004 * 126.01209 * 0.02562 * 11 10 9 31 31 H 1.08997 * 109.47010 * 16.70820 * 13 12 11 32 32 H 1.09004 * 109.47022 * 136.71214 * 13 12 11 33 33 H 1.00899 * 111.00161 * 308.60707 * 14 13 12 34 34 H 1.08999 * 109.47259 * 299.99852 * 15 14 13 35 35 H 1.09001 * 109.47052 * 60.00671 * 15 14 13 36 36 H 1.08999 * 109.47519 * 300.00593 * 16 15 14 37 37 H 1.09005 * 109.47003 * 60.00044 * 16 15 14 38 38 H 1.09006 * 109.47108 * 300.00210 * 17 16 15 39 39 H 1.08992 * 109.47157 * 60.00320 * 17 16 15 40 40 H 0.96701 * 114.00121 * 180.02562 * 18 17 16 41 41 H 1.08002 * 120.05679 * 359.95814 * 21 20 19 42 42 H 1.07995 * 119.94070 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.87886 * 179.74813 * 23 22 21 44 44 H 1.08005 * 119.93775 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.05845 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.2420 -4.6228 0.8935 12 6 3.2547 -5.4473 0.5481 13 6 3.6573 -6.7085 1.2682 14 7 4.8648 -6.4532 2.0650 15 6 5.3509 -7.6883 2.6945 16 6 6.6061 -7.3829 3.5143 17 6 7.1129 -8.6693 4.1695 18 8 8.2848 -8.3840 4.9357 19 6 3.8694 -4.9173 -0.6030 20 6 5.0285 -5.5025 -1.3219 21 6 5.0906 -6.8760 -1.5473 22 6 6.1706 -7.4148 -2.2167 23 6 7.1900 -6.5938 -2.6641 24 6 7.1334 -5.2296 -2.4430 25 6 6.0580 -4.6802 -1.7746 26 7 3.2307 -3.8145 -0.9319 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 1.5772 -4.7516 1.7349 31 1 2.8481 -7.0252 1.9261 32 1 3.8618 -7.4932 0.5398 33 1 5.5855 -6.0260 1.5027 34 1 4.5783 -8.0905 3.3498 35 1 5.5898 -8.4198 1.9225 36 1 7.3789 -6.9803 2.8595 37 1 6.3669 -6.6514 4.2863 38 1 6.3402 -9.0723 4.8244 39 1 7.3522 -9.4004 3.3973 40 1 8.6618 -9.1557 5.3800 41 1 4.2951 -7.5179 -1.1985 42 1 6.2195 -8.4793 -2.3923 43 1 8.0352 -7.0201 -3.1839 44 1 7.9323 -4.5931 -2.7941 45 1 6.0147 -3.6148 -1.6030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072713082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:01 Heat of formation + Delta-G solvation = 39.491834 kcal Electronic energy + Delta-G solvation = -25343.721550 eV Core-core repulsion = 21748.118554 eV Total energy + Delta-G solvation = -3595.602996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62770 -38.68743 -37.59480 -36.16764 -33.88694 -32.53317 -32.00523 -30.80782 -30.22600 -29.40456 -27.19905 -25.29480 -23.72680 -23.30931 -22.37874 -21.68424 -21.48870 -19.91473 -19.20003 -17.61873 -16.78122 -16.54915 -16.19736 -15.93320 -15.23184 -15.09905 -14.91400 -14.68037 -14.27820 -13.97399 -13.80292 -13.44974 -13.36771 -13.25756 -12.93387 -12.59039 -12.29137 -12.23775 -12.05703 -11.72727 -11.45446 -11.31353 -11.23473 -11.05106 -11.01755 -10.84701 -10.79908 -10.26373 -10.22177 -10.05271 -9.61892 -9.08876 -8.84300 -8.63418 -8.37194 -8.17427 -7.57777 -6.26326 -4.31467 1.29754 1.50916 2.71639 3.18091 3.25862 3.28796 3.32760 3.48194 3.86105 4.02558 4.30667 4.60944 4.77869 4.88059 4.99682 5.01742 5.03417 5.09162 5.11826 5.20169 5.21941 5.28301 5.38491 5.51990 5.55691 5.59070 5.66799 5.72997 5.86870 5.99070 6.04446 6.08836 6.11827 6.23956 6.47261 6.59097 6.62711 6.70420 6.92808 7.00305 7.07640 7.12767 7.30400 7.34373 7.49854 7.67228 7.84068 7.95794 8.51872 8.76582 9.34423 10.82661 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.003378 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.919110 B = 8286.450939 C = 9540.266873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.256 3.744 10 N -0.321 5.321 11 C 0.068 3.932 12 C -0.249 4.249 13 C 0.145 3.855 14 N -0.683 5.683 15 C 0.063 3.937 16 C -0.120 4.120 17 C 0.078 3.922 18 O -0.575 6.575 19 C 0.076 3.924 20 C 0.011 3.989 21 C -0.108 4.108 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.096 4.096 26 N -0.262 5.262 27 H 0.268 0.732 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.166 0.834 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.344 0.656 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.378 0.622 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.032 -19.371 2.764 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.139 3.861 10 N -0.101 5.101 11 C -0.083 4.083 12 C -0.262 4.262 13 C 0.016 3.984 14 N -0.315 5.315 15 C -0.067 4.067 16 C -0.158 4.158 17 C 0.000 4.000 18 O -0.380 6.380 19 C -0.088 4.088 20 C 0.010 3.990 21 C -0.128 4.128 22 C -0.141 4.141 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.115 4.115 26 N -0.086 5.086 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.183 0.817 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.224 0.776 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.138 -17.285 2.278 20.689 hybrid contribution 0.725 -0.662 0.059 0.983 sum 11.862 -17.947 2.337 21.640 Atomic orbital electron populations 1.69908 1.06059 1.27793 1.49589 1.24935 0.94983 0.99558 0.94484 0.86382 0.79406 0.81712 0.79011 1.19872 1.21014 1.19956 1.21189 0.93951 0.89299 1.52350 0.91326 1.19768 0.85713 0.81313 0.99292 1.49403 1.23475 1.19201 1.18002 1.22217 1.00002 0.89865 0.96175 1.19577 1.02763 1.02651 1.01175 1.20079 0.92162 0.92704 0.93433 1.60536 1.08483 1.24865 1.37596 1.21800 0.96067 0.91731 0.97100 1.21478 0.97002 0.97228 1.00093 1.22131 0.86797 0.97321 0.93777 1.86500 1.44364 1.38732 1.68410 1.20438 0.97187 0.94861 0.96289 1.17879 0.91857 0.92510 0.96801 1.21182 0.98350 0.94093 0.99152 1.20986 0.94417 0.99527 0.99207 1.21127 0.98832 0.93842 1.00613 1.21079 0.98268 0.95166 0.99273 1.21332 0.93026 1.00229 0.96882 1.77647 1.01073 1.15789 1.14047 0.92234 0.93648 0.92619 0.81661 0.91016 0.94900 0.83811 0.91070 0.95478 0.91393 0.90261 0.93613 0.93852 0.77571 0.85880 0.86267 0.86419 0.86069 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 13.29 55.43 0.74 -24.61 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.72 9.23 -34.44 -0.32 -15.04 16 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 9 C 0.26 6.47 6.26 -5.19 -0.03 6.43 16 10 N -0.32 -7.28 3.67 -62.58 -0.23 -7.51 16 11 C 0.07 1.27 11.32 -17.26 -0.20 1.08 16 12 C -0.25 -4.29 5.55 -104.76 -0.58 -4.87 16 13 C 0.15 1.95 5.72 -4.97 -0.03 1.92 16 14 N -0.68 -8.96 6.52 -115.05 -0.75 -9.71 16 15 C 0.06 0.64 5.68 -3.82 -0.02 0.62 16 16 C -0.12 -1.24 5.84 -26.73 -0.16 -1.39 16 17 C 0.08 0.65 7.05 37.16 0.26 0.91 16 18 O -0.57 -5.35 13.66 -35.23 -0.48 -5.83 16 19 C 0.08 1.44 6.67 -82.78 -0.55 0.89 16 20 C 0.01 0.18 5.74 -104.90 -0.60 -0.42 16 21 C -0.11 -1.43 8.86 -39.26 -0.35 -1.78 16 22 C -0.12 -1.38 10.03 -39.63 -0.40 -1.78 16 23 C -0.13 -1.39 10.04 -39.52 -0.40 -1.78 16 24 C -0.12 -1.49 10.03 -39.63 -0.40 -1.88 16 25 C -0.10 -1.46 9.78 -39.26 -0.38 -1.85 16 26 N -0.26 -5.96 12.44 33.43 0.42 -5.55 16 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.17 2.61 8.06 -52.48 -0.42 2.19 16 31 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 32 H 0.03 0.40 5.63 -51.93 -0.29 0.11 16 33 H 0.34 4.84 8.66 -39.29 -0.34 4.50 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.38 1.64 9.12 45.56 0.42 2.06 16 41 H 0.12 1.51 6.19 -52.49 -0.33 1.18 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 45 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -31.71 382.93 -9.81 -41.52 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.00 Total: 6.77 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -4.25 Total: -17.31 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.17 Total: -47.38 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.48 Total: -5.83 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.71 -9.81 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072713082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.012 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds