Wall clock time and date at job start Tue Mar 31 2020 12:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99878 * 2 1 4 4 H 1.48501 * 109.47091 * 240.00312 * 3 2 1 5 5 H 1.48498 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46620 * 120.00602 * 3 2 1 7 7 C 1.37876 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99701 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46948 * 179.97438 * 9 7 2 11 11 C 1.35036 * 125.92781 * 124.99754 * 10 9 7 12 12 C 1.35082 * 107.98287 * 179.74522 * 11 10 9 13 13 C 1.50698 * 126.08157 * 180.24726 * 12 11 10 14 14 N 1.46906 * 109.47076 * 256.70902 * 13 12 11 15 15 C 1.46899 * 110.99583 * 184.65319 * 14 13 12 16 16 C 1.53007 * 109.46812 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47215 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47108 * 180.02562 * 17 16 15 19 19 C 1.40856 * 107.84323 * 0.37382 * 12 11 10 20 20 C 1.48419 * 126.03498 * 179.88739 * 19 12 11 21 21 C 1.39328 * 120.12195 * 42.63760 * 20 19 12 22 22 C 1.38018 * 119.88052 * 179.97438 * 21 20 19 23 23 C 1.38325 * 120.11942 * 359.97438 * 22 21 20 24 24 C 1.38316 * 120.23951 * 0.02562 * 23 22 21 25 25 C 1.38024 * 120.12202 * 359.97438 * 24 23 22 26 26 N 1.31615 * 107.92478 * 359.62429 * 19 12 11 27 27 H 0.97002 * 119.99705 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47491 * 60.00556 * 9 7 2 29 29 H 1.09001 * 109.47371 * 300.00031 * 9 7 2 30 30 H 1.08004 * 126.01209 * 0.02562 * 11 10 9 31 31 H 1.08997 * 109.47010 * 16.70820 * 13 12 11 32 32 H 1.09004 * 109.47022 * 136.71214 * 13 12 11 33 33 H 1.00899 * 111.00161 * 308.60707 * 14 13 12 34 34 H 1.08999 * 109.47259 * 299.99852 * 15 14 13 35 35 H 1.09001 * 109.47052 * 60.00671 * 15 14 13 36 36 H 1.08999 * 109.47519 * 300.00593 * 16 15 14 37 37 H 1.09005 * 109.47003 * 60.00044 * 16 15 14 38 38 H 1.09006 * 109.47108 * 300.00210 * 17 16 15 39 39 H 1.08992 * 109.47157 * 60.00320 * 17 16 15 40 40 H 0.96701 * 114.00121 * 180.02562 * 18 17 16 41 41 H 1.08002 * 120.05679 * 359.95814 * 21 20 19 42 42 H 1.07995 * 119.94070 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.87886 * 179.74813 * 23 22 21 44 44 H 1.08005 * 119.93775 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.05845 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.2420 -4.6228 0.8935 12 6 3.2547 -5.4473 0.5481 13 6 3.6573 -6.7085 1.2682 14 7 4.8648 -6.4532 2.0650 15 6 5.3509 -7.6883 2.6945 16 6 6.6061 -7.3829 3.5143 17 6 7.1129 -8.6693 4.1695 18 8 8.2848 -8.3840 4.9357 19 6 3.8694 -4.9173 -0.6030 20 6 5.0285 -5.5025 -1.3219 21 6 5.0906 -6.8760 -1.5473 22 6 6.1706 -7.4148 -2.2167 23 6 7.1900 -6.5938 -2.6641 24 6 7.1334 -5.2296 -2.4430 25 6 6.0580 -4.6802 -1.7746 26 7 3.2307 -3.8145 -0.9319 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 1.5772 -4.7516 1.7349 31 1 2.8481 -7.0252 1.9261 32 1 3.8618 -7.4932 0.5398 33 1 5.5855 -6.0260 1.5027 34 1 4.5783 -8.0905 3.3498 35 1 5.5898 -8.4198 1.9225 36 1 7.3789 -6.9803 2.8595 37 1 6.3669 -6.6514 4.2863 38 1 6.3402 -9.0723 4.8244 39 1 7.3522 -9.4004 3.3973 40 1 8.6618 -9.1557 5.3800 41 1 4.2951 -7.5179 -1.1985 42 1 6.2195 -8.4793 -2.3923 43 1 8.0352 -7.0201 -3.1839 44 1 7.9323 -4.5931 -2.7941 45 1 6.0147 -3.6148 -1.6030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072713082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:00 Heat of formation + Delta-G solvation = 17.235512 kcal Electronic energy + Delta-G solvation = -25344.686657 eV Core-core repulsion = 21748.118554 eV Total energy + Delta-G solvation = -3596.568103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.10537 -39.75037 -38.33355 -37.08633 -35.72553 -34.07394 -33.10952 -31.80320 -31.66395 -30.67524 -28.85953 -26.47897 -25.34731 -24.29428 -23.46834 -22.98152 -22.31812 -21.34403 -20.56890 -18.68247 -18.29891 -17.92050 -17.34083 -17.02684 -16.51457 -16.24819 -16.08097 -15.79586 -15.59406 -15.40793 -14.98405 -14.49151 -14.44301 -14.32683 -14.14835 -13.93267 -13.78925 -13.49820 -13.35018 -13.17056 -12.88227 -12.72956 -12.43225 -12.28064 -12.13288 -12.03270 -11.98652 -11.89989 -11.80998 -11.25661 -10.83773 -10.79701 -10.47940 -9.83915 -9.63416 -9.31508 -8.98727 -8.37539 -6.51794 0.21703 0.51147 1.19824 1.34374 1.36381 1.45276 1.82529 1.90924 2.31423 2.93934 2.94819 3.17118 3.61924 3.76777 3.88299 4.04446 4.06318 4.13443 4.24822 4.32303 4.34900 4.38851 4.42844 4.56370 4.60108 4.63254 4.68723 4.71339 4.78474 4.80824 4.87944 5.03410 5.10566 5.19649 5.21546 5.26440 5.29419 5.49795 5.52013 5.61575 5.68584 5.78191 5.87324 6.10177 6.19378 6.27134 6.44415 6.59777 6.94916 6.98865 7.18249 8.70146 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.003378 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.919110 B = 8286.450939 C = 9540.266873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.049 0.951 9 C 0.273 3.727 10 N -0.351 5.351 11 C 0.056 3.944 12 C -0.240 4.240 13 C 0.152 3.848 14 N -0.698 5.698 15 C 0.068 3.932 16 C -0.118 4.118 17 C 0.080 3.920 18 O -0.600 6.600 19 C 0.084 3.916 20 C -0.019 4.019 21 C -0.107 4.107 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.120 4.120 26 N -0.321 5.321 27 H 0.274 0.726 28 H 0.018 0.982 29 H 0.055 0.945 30 H 0.192 0.808 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.335 0.665 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.398 0.602 41 H 0.133 0.867 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.141 0.859 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.990 -22.253 2.838 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.067 0.933 9 C 0.154 3.846 10 N -0.131 5.131 11 C -0.092 4.092 12 C -0.252 4.252 13 C 0.023 3.977 14 N -0.329 5.329 15 C -0.061 4.061 16 C -0.156 4.156 17 C 0.002 3.998 18 O -0.409 6.409 19 C -0.080 4.080 20 C -0.021 4.021 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.139 4.139 26 N -0.144 5.144 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.209 0.791 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.153 0.847 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.248 0.752 41 H 0.151 0.849 42 H 0.174 0.826 43 H 0.172 0.828 44 H 0.159 0.841 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.102 -20.208 2.375 24.201 hybrid contribution 0.252 0.081 0.005 0.265 sum 13.354 -20.127 2.380 24.271 Atomic orbital electron populations 1.69984 1.07169 1.28890 1.49779 1.25730 0.95868 1.02691 0.93779 0.85431 0.78374 0.77932 0.78906 1.19981 1.19427 1.19434 1.21339 0.93209 0.91104 1.53073 0.93306 1.19265 0.85831 0.81730 0.97779 1.49094 1.24189 1.19974 1.19806 1.22824 1.01035 0.89096 0.96263 1.20040 1.01389 1.03419 1.00317 1.20111 0.92846 0.90815 0.93900 1.60513 1.08267 1.26745 1.37407 1.21814 0.96170 0.90679 0.97398 1.21435 0.96827 0.97989 0.99361 1.22120 0.86988 0.96242 0.94423 1.86442 1.44853 1.40727 1.68888 1.21085 0.96983 0.93478 0.96438 1.17966 0.91325 0.93994 0.98781 1.21317 0.99478 0.92609 0.99238 1.21415 0.93077 1.01402 0.97301 1.21580 0.99593 0.92900 0.99153 1.21323 0.97604 0.96561 0.98394 1.21266 0.94734 0.99067 0.98837 1.77562 1.02549 1.18572 1.15757 0.91744 0.96375 0.92693 0.79138 0.89476 0.93067 0.84736 0.89910 0.93755 0.92753 0.92432 0.92163 0.92081 0.75209 0.84886 0.82560 0.82754 0.84135 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.36 13.29 21.45 0.28 -53.07 16 2 C 0.02 1.13 5.46 84.65 0.46 1.59 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.55 -32.14 9.23 25.60 0.24 -31.91 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 9 C 0.27 14.65 6.26 85.63 0.54 15.19 16 10 N -0.35 -16.87 3.67 -351.91 -1.29 -18.16 16 11 C 0.06 2.18 11.32 83.47 0.95 3.12 16 12 C -0.24 -8.31 5.55 -19.95 -0.11 -8.42 16 13 C 0.15 3.80 5.72 85.56 0.49 4.29 16 14 N -0.70 -17.39 6.52 -517.91 -3.38 -20.77 16 15 C 0.07 1.22 5.68 86.31 0.49 1.71 16 16 C -0.12 -2.27 5.84 30.60 0.18 -2.09 16 17 C 0.08 1.13 7.05 71.98 0.51 1.64 16 18 O -0.60 -10.06 13.66 -148.98 -2.03 -12.10 16 19 C 0.08 3.32 6.67 42.53 0.28 3.60 16 20 C -0.02 -0.60 5.74 -20.04 -0.12 -0.72 16 21 C -0.11 -2.60 8.86 22.48 0.20 -2.40 16 22 C -0.11 -2.09 10.03 22.24 0.22 -1.86 16 23 C -0.11 -2.07 10.04 22.31 0.22 -1.84 16 24 C -0.12 -2.81 10.03 22.24 0.22 -2.59 16 25 C -0.12 -3.76 9.78 22.48 0.22 -3.54 16 26 N -0.32 -15.60 12.44 -48.15 -0.60 -16.20 16 27 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 2.89 8.07 -2.39 -0.02 2.87 16 30 H 0.19 6.08 8.06 -2.91 -0.02 6.05 16 31 H 0.09 1.93 8.13 -2.39 -0.02 1.91 16 32 H 0.05 1.10 5.63 -2.38 -0.01 1.09 16 33 H 0.34 9.29 8.66 -89.69 -0.78 8.51 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.40 2.60 9.12 -74.06 -0.68 1.93 16 41 H 0.13 2.89 6.19 -2.91 -0.02 2.87 16 42 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.10 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -73.08 382.93 -0.45 -73.53 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.45 Total: 23.97 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.99 Total: -24.21 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -4.98 Total: -108.20 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -2.03 Total: -12.10 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.08 -0.45 -73.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072713082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.766 kcal (2) G-P(sol) polarization free energy of solvation -73.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds