Wall clock time and date at job start Tue Mar 31 2020 11:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00305 * 2 1 4 4 C 1.53005 * 109.47200 * 124.99420 * 3 2 1 5 5 C 1.53002 * 109.46841 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.46834 * 179.97438 * 5 4 3 7 7 C 1.46501 * 120.00043 * 269.99920 * 6 5 4 8 8 C 1.34775 * 120.00065 * 90.00079 * 6 5 4 9 9 O 1.21726 * 120.00073 * 359.97438 * 8 6 5 10 10 C 1.46258 * 120.00322 * 179.97438 * 8 6 5 11 11 C 1.35015 * 120.00185 * 179.97438 * 10 8 6 12 12 C 1.46966 * 119.99859 * 179.72327 * 11 10 8 13 13 C 1.40020 * 120.10099 * 359.72646 * 12 11 10 14 14 C 1.37601 * 119.89632 * 179.78802 * 13 12 11 15 15 C 1.39173 * 120.10087 * 0.48795 * 14 13 12 16 16 O 1.35568 * 119.90002 * 179.76457 * 15 14 13 17 17 C 1.34779 * 117.00070 * 174.42258 * 16 15 14 18 18 H 1.07996 * 120.00296 * 5.05680 * 17 16 15 19 19 C 1.38728 * 119.99880 * 185.05920 * 17 16 15 20 20 N 1.31508 * 119.99925 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99891 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46999 * 90.00502 * 21 19 17 23 23 H 1.48502 * 109.46807 * 210.00364 * 21 19 17 24 24 H 1.48497 * 109.47364 * 330.00385 * 21 19 17 25 25 C 1.39182 * 120.20443 * 359.74007 * 15 14 13 26 26 C 1.37597 * 120.10073 * 0.02562 * 25 15 14 27 27 H 1.08002 * 120.00260 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99635 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99635 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47079 * 4.99100 * 3 2 1 31 31 H 1.09001 * 109.47022 * 244.99538 * 3 2 1 32 32 H 1.08997 * 109.46859 * 59.99992 * 4 3 2 33 33 H 1.09001 * 109.47229 * 299.99991 * 4 3 2 34 34 H 1.09004 * 109.47016 * 59.99805 * 5 4 3 35 35 H 1.09001 * 109.47196 * 300.00004 * 5 4 3 36 36 H 1.09003 * 109.47248 * 270.00184 * 7 6 5 37 37 H 1.09000 * 109.47003 * 30.00340 * 7 6 5 38 38 H 1.09001 * 109.47262 * 149.99877 * 7 6 5 39 39 H 1.08007 * 119.99439 * 359.72456 * 10 8 6 40 40 H 1.07994 * 120.00134 * 359.72623 * 11 10 8 41 41 H 1.08001 * 120.05482 * 359.97438 * 13 12 11 42 42 H 1.08000 * 119.94685 * 180.22931 * 14 13 12 43 43 H 0.96995 * 120.00201 * 179.97438 * 20 19 17 44 44 H 1.07995 * 119.94818 * 179.97438 * 25 15 14 45 45 H 1.07996 * 120.05582 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 6 3.7996 2.6583 1.1820 6 7 4.7293 2.6854 2.3139 7 6 4.2937 3.2183 3.6071 8 6 5.9855 2.2201 2.1654 9 8 6.3473 1.7769 1.0910 10 6 6.9139 2.2476 3.2952 11 6 8.1721 1.7810 3.1466 12 6 9.1068 1.8142 4.2802 13 6 8.6965 2.3347 5.5137 14 6 9.5738 2.3598 6.5735 15 6 10.8703 1.8783 6.4179 16 8 11.7327 1.9093 7.4635 17 6 12.9335 1.3243 7.2838 18 1 13.2031 0.9312 6.3147 19 6 13.8232 1.2269 8.3437 20 7 14.9950 0.6565 8.1683 21 14 13.3571 1.9073 10.0198 22 1 12.6820 0.8491 10.8133 23 1 14.5820 2.3536 10.7308 24 1 12.4369 3.0600 9.8477 25 6 11.2840 1.3644 5.1924 26 6 10.4122 1.3308 4.1284 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0894 31 1 2.6214 1.4025 -0.9314 32 1 3.7399 0.5065 1.0922 33 1 2.4772 1.2356 2.1131 34 1 3.0944 3.4847 1.2717 35 1 4.3574 2.7562 0.2507 36 1 4.4997 4.2880 3.6474 37 1 3.2236 3.0497 3.7277 38 1 4.8335 2.7139 4.4085 39 1 6.5941 2.6450 4.2473 40 1 8.4916 1.3833 2.1948 41 1 7.6921 2.7131 5.6339 42 1 9.2570 2.7576 7.5262 43 1 15.6173 0.5887 8.9093 44 1 12.2911 0.9922 5.0762 45 1 10.7342 0.9323 3.1777 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076490552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:57 Heat of formation + Delta-G solvation = -7.511367 kcal Electronic energy + Delta-G solvation = -24130.086401 eV Core-core repulsion = 20500.152442 eV Total energy + Delta-G solvation = -3629.933959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.92076 -39.31442 -37.15502 -36.62756 -35.24367 -33.32999 -32.51109 -31.69247 -30.53637 -28.57823 -27.36304 -26.19854 -25.41248 -23.22136 -22.31376 -21.80169 -20.34967 -19.98717 -18.71074 -17.95909 -17.51039 -17.23921 -16.22709 -15.73037 -15.44814 -15.09027 -14.96235 -14.52716 -14.11002 -13.99947 -13.91832 -13.75149 -13.49148 -13.15469 -12.87532 -12.82214 -12.77425 -12.48176 -12.40551 -12.17458 -11.88708 -11.85917 -11.62326 -11.29318 -11.19504 -11.02856 -10.96291 -10.76086 -10.28270 -9.81280 -9.66672 -9.65091 -9.55334 -8.94708 -8.75750 -8.47691 -7.24642 -6.60834 -4.24636 0.98214 1.92951 2.02712 2.46491 2.95690 3.11270 3.15156 3.28342 3.50732 4.08283 4.42065 4.44809 4.54854 4.62415 4.73531 4.85688 4.93306 4.93427 4.98801 5.10388 5.13329 5.17125 5.28530 5.39871 5.41684 5.45521 5.52119 5.57342 5.59287 5.60863 5.81599 5.93565 5.97194 6.02266 6.25419 6.29119 6.31446 6.41906 6.50334 6.54644 6.67001 6.92055 7.08326 7.15208 7.35587 7.41134 7.62302 7.83622 8.25940 8.72444 9.32681 10.45432 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.032425 B = 0.001851 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.318791 B =15121.777373 C =15377.522002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.092 4.092 4 C -0.130 4.130 5 C 0.117 3.883 6 N -0.621 5.621 7 C 0.079 3.921 8 C 0.555 3.445 9 O -0.555 6.555 10 C -0.280 4.280 11 C 0.035 3.965 12 C -0.189 4.189 13 C -0.045 4.045 14 C -0.199 4.199 15 C 0.173 3.827 16 O -0.202 6.202 17 C -0.392 4.392 18 H 0.111 0.889 19 C 0.066 3.934 20 N -0.867 5.867 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.258 1.258 25 C -0.229 4.229 26 C -0.037 4.037 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.283 0.717 44 H 0.137 0.863 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.726 3.676 -10.029 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.167 4.167 3 C -0.130 4.130 4 C -0.169 4.169 5 C -0.006 4.006 6 N -0.354 5.354 7 C -0.064 4.064 8 C 0.349 3.651 9 O -0.435 6.435 10 C -0.301 4.301 11 C 0.015 3.985 12 C -0.190 4.190 13 C -0.064 4.064 14 C -0.218 4.218 15 C 0.119 3.881 16 O -0.105 6.105 17 C -0.467 4.467 18 H 0.128 0.872 19 C -0.139 4.139 20 N -0.502 5.502 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.182 1.182 25 C -0.248 4.248 26 C -0.055 4.055 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.093 0.907 44 H 0.155 0.845 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -23.300 3.491 -10.223 25.682 hybrid contribution -0.044 0.131 0.803 0.815 sum -23.344 3.622 -9.420 25.432 Atomic orbital electron populations 1.23840 0.95937 1.01756 1.02107 1.22988 0.96003 0.98674 0.99048 1.20703 0.97966 0.95372 0.98963 1.21902 0.97995 0.98746 0.98221 1.21424 0.91772 0.97049 0.90363 1.47691 1.12170 1.63461 1.12104 1.21817 1.00594 0.98985 0.85008 1.18438 0.81394 0.76680 0.88595 1.90770 1.77060 1.47203 1.28517 1.22577 0.95503 1.13195 0.98805 1.22322 0.91560 0.87908 0.96661 1.18531 0.94870 1.11514 0.94088 1.20868 0.98003 0.95977 0.91516 1.20141 0.91924 1.09794 0.99985 1.19362 0.89188 0.92236 0.87348 1.83502 1.25047 1.66830 1.35135 1.20880 0.88570 1.36895 1.00361 0.87194 1.24539 0.94234 0.95647 0.99483 1.69614 1.06702 1.40146 1.33775 0.86158 0.78496 0.80413 0.81766 1.19646 1.20512 1.18207 1.21223 1.01880 1.08656 0.93091 1.21046 0.91970 0.94796 0.97710 0.88616 0.88674 0.87398 0.91493 0.90671 0.91213 0.91858 0.90882 0.89863 0.92608 0.91388 0.90460 0.85624 0.85818 0.86335 0.86116 0.90653 0.84496 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.30 14.32 29.01 0.42 -0.89 16 2 C -0.15 -1.09 9.52 -36.03 -0.34 -1.43 16 3 C -0.09 -0.65 5.66 -27.88 -0.16 -0.81 16 4 C -0.13 -1.10 5.52 -26.73 -0.15 -1.24 16 5 C 0.12 1.05 5.41 -4.04 -0.02 1.03 16 6 N -0.62 -6.58 2.87 -183.28 -0.53 -7.11 16 7 C 0.08 0.58 10.15 59.85 0.61 1.19 16 8 C 0.56 7.77 7.60 -13.04 -0.10 7.67 16 9 O -0.56 -9.57 15.81 5.17 0.08 -9.49 16 10 C -0.28 -3.73 8.60 -37.51 -0.32 -4.05 16 11 C 0.04 0.52 9.45 -37.19 -0.35 0.17 16 12 C -0.19 -3.09 5.87 -105.02 -0.62 -3.71 16 13 C -0.05 -0.72 9.40 -39.15 -0.37 -1.09 16 14 C -0.20 -3.66 9.97 -39.47 -0.39 -4.05 16 15 C 0.17 3.76 6.66 -38.88 -0.26 3.50 16 16 O -0.20 -5.04 8.57 0.75 0.01 -5.03 16 17 C -0.39 -10.49 9.94 30.91 0.31 -10.18 16 18 H 0.11 3.00 5.41 -52.49 -0.28 2.71 16 19 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 20 N -0.87 -23.87 13.96 55.48 0.77 -23.10 16 21 Si 0.91 20.54 28.62 -169.99 -4.86 15.67 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 25 C -0.23 -4.68 9.14 -39.47 -0.36 -5.04 16 26 C -0.04 -0.64 9.78 -39.14 -0.38 -1.03 16 27 H 0.10 0.55 8.06 -52.49 -0.42 0.12 16 28 H 0.09 0.54 7.84 -52.48 -0.41 0.13 16 29 H 0.11 0.79 8.06 -52.48 -0.42 0.37 16 30 H 0.07 0.40 7.79 -51.93 -0.40 -0.01 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 35 H 0.08 0.88 7.42 -51.93 -0.39 0.49 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 38 H 0.08 0.55 6.10 -51.93 -0.32 0.24 16 39 H 0.13 1.41 4.22 -52.48 -0.22 1.19 16 40 H 0.12 1.84 7.52 -52.49 -0.39 1.45 16 41 H 0.12 1.49 6.16 -52.49 -0.32 1.17 16 42 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 43 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.14 2.92 5.62 -52.49 -0.29 2.62 16 45 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -29.89 380.98 -7.77 -37.66 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.39 Total: 3.94 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -2.59 Total: -18.28 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 0.25 Total: -30.21 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.09 Total: -14.52 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.86 Total: 15.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.89 -7.77 -37.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076490552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.146 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds