Wall clock time and date at job start Tue Mar 31 2020 11:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00305 * 2 1 4 4 C 1.53005 * 109.47200 * 124.99420 * 3 2 1 5 5 C 1.53002 * 109.46841 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.46834 * 179.97438 * 5 4 3 7 7 C 1.46501 * 120.00043 * 269.99920 * 6 5 4 8 8 C 1.34775 * 120.00065 * 90.00079 * 6 5 4 9 9 O 1.21726 * 120.00073 * 359.97438 * 8 6 5 10 10 C 1.46258 * 120.00322 * 179.97438 * 8 6 5 11 11 C 1.35015 * 120.00185 * 179.97438 * 10 8 6 12 12 C 1.46966 * 119.99859 * 179.72327 * 11 10 8 13 13 C 1.40020 * 120.10099 * 359.72646 * 12 11 10 14 14 C 1.37601 * 119.89632 * 179.78802 * 13 12 11 15 15 C 1.39173 * 120.10087 * 0.48795 * 14 13 12 16 16 O 1.35568 * 119.90002 * 179.76457 * 15 14 13 17 17 C 1.34779 * 117.00070 * 174.42258 * 16 15 14 18 18 H 1.07996 * 120.00296 * 5.05680 * 17 16 15 19 19 C 1.38728 * 119.99880 * 185.05920 * 17 16 15 20 20 N 1.31508 * 119.99925 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99891 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46999 * 90.00502 * 21 19 17 23 23 H 1.48502 * 109.46807 * 210.00364 * 21 19 17 24 24 H 1.48497 * 109.47364 * 330.00385 * 21 19 17 25 25 C 1.39182 * 120.20443 * 359.74007 * 15 14 13 26 26 C 1.37597 * 120.10073 * 0.02562 * 25 15 14 27 27 H 1.08002 * 120.00260 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99635 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99635 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47079 * 4.99100 * 3 2 1 31 31 H 1.09001 * 109.47022 * 244.99538 * 3 2 1 32 32 H 1.08997 * 109.46859 * 59.99992 * 4 3 2 33 33 H 1.09001 * 109.47229 * 299.99991 * 4 3 2 34 34 H 1.09004 * 109.47016 * 59.99805 * 5 4 3 35 35 H 1.09001 * 109.47196 * 300.00004 * 5 4 3 36 36 H 1.09003 * 109.47248 * 270.00184 * 7 6 5 37 37 H 1.09000 * 109.47003 * 30.00340 * 7 6 5 38 38 H 1.09001 * 109.47262 * 149.99877 * 7 6 5 39 39 H 1.08007 * 119.99439 * 359.72456 * 10 8 6 40 40 H 1.07994 * 120.00134 * 359.72623 * 11 10 8 41 41 H 1.08001 * 120.05482 * 359.97438 * 13 12 11 42 42 H 1.08000 * 119.94685 * 180.22931 * 14 13 12 43 43 H 0.96995 * 120.00201 * 179.97438 * 20 19 17 44 44 H 1.07995 * 119.94818 * 179.97438 * 25 15 14 45 45 H 1.07996 * 120.05582 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 6 3.7996 2.6583 1.1820 6 7 4.7293 2.6854 2.3139 7 6 4.2937 3.2183 3.6071 8 6 5.9855 2.2201 2.1654 9 8 6.3473 1.7769 1.0910 10 6 6.9139 2.2476 3.2952 11 6 8.1721 1.7810 3.1466 12 6 9.1068 1.8142 4.2802 13 6 8.6965 2.3347 5.5137 14 6 9.5738 2.3598 6.5735 15 6 10.8703 1.8783 6.4179 16 8 11.7327 1.9093 7.4635 17 6 12.9335 1.3243 7.2838 18 1 13.2031 0.9312 6.3147 19 6 13.8232 1.2269 8.3437 20 7 14.9950 0.6565 8.1683 21 14 13.3571 1.9073 10.0198 22 1 12.6820 0.8491 10.8133 23 1 14.5820 2.3536 10.7308 24 1 12.4369 3.0600 9.8477 25 6 11.2840 1.3644 5.1924 26 6 10.4122 1.3308 4.1284 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0894 31 1 2.6214 1.4025 -0.9314 32 1 3.7399 0.5065 1.0922 33 1 2.4772 1.2356 2.1131 34 1 3.0944 3.4847 1.2717 35 1 4.3574 2.7562 0.2507 36 1 4.4997 4.2880 3.6474 37 1 3.2236 3.0497 3.7277 38 1 4.8335 2.7139 4.4085 39 1 6.5941 2.6450 4.2473 40 1 8.4916 1.3833 2.1948 41 1 7.6921 2.7131 5.6339 42 1 9.2570 2.7576 7.5262 43 1 15.6173 0.5887 8.9093 44 1 12.2911 0.9922 5.0762 45 1 10.7342 0.9323 3.1777 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076490552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:56 Heat of formation + Delta-G solvation = -22.883588 kcal Electronic energy + Delta-G solvation = -24130.752991 eV Core-core repulsion = 20500.152442 eV Total energy + Delta-G solvation = -3630.600548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07427 -40.77997 -38.64286 -37.45902 -36.01160 -34.79140 -34.22952 -32.42631 -32.00416 -29.92088 -28.03185 -27.57107 -26.69200 -24.36429 -23.76517 -22.77344 -21.46183 -20.66200 -20.11307 -19.34797 -19.09372 -18.40347 -17.17780 -16.67388 -16.47096 -16.31514 -16.19328 -15.79829 -15.59607 -15.53104 -15.18296 -14.59005 -14.44099 -14.37390 -14.24575 -14.03243 -13.92925 -13.45400 -13.42482 -13.38372 -12.94623 -12.76543 -12.71992 -12.62441 -12.42702 -12.29801 -11.93602 -11.83507 -11.64239 -11.31060 -11.15890 -10.88544 -10.66982 -10.24540 -9.92309 -9.62109 -8.74117 -8.53689 -6.25601 -0.29374 0.54601 1.09447 1.32750 1.37417 1.40292 1.52567 2.11861 2.26346 2.34289 2.80115 3.00077 3.14828 3.61775 3.87712 3.90703 3.98227 4.03714 4.20793 4.23880 4.28430 4.34563 4.44445 4.44885 4.51392 4.58664 4.62460 4.74995 4.75586 4.83148 4.95187 4.99288 5.02330 5.11516 5.15759 5.21355 5.28233 5.31242 5.37753 5.55285 5.66248 5.69973 5.77624 5.79108 5.83061 5.89418 6.13947 6.42030 6.79381 7.21129 7.50387 8.57145 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.032425 B = 0.001851 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.318791 B =15121.777373 C =15377.522002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.168 4.168 3 C -0.087 4.087 4 C -0.121 4.121 5 C 0.113 3.887 6 N -0.614 5.614 7 C 0.068 3.932 8 C 0.543 3.457 9 O -0.595 6.595 10 C -0.242 4.242 11 C 0.010 3.990 12 C -0.160 4.160 13 C -0.039 4.039 14 C -0.192 4.192 15 C 0.136 3.864 16 O -0.232 6.232 17 C -0.405 4.405 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.917 5.917 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.259 1.259 25 C -0.243 4.243 26 C -0.046 4.046 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.158 0.842 40 H 0.119 0.881 41 H 0.166 0.834 42 H 0.141 0.859 43 H 0.286 0.714 44 H 0.113 0.887 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.762 5.549 -9.912 30.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.125 4.125 4 C -0.159 4.159 5 C -0.009 4.009 6 N -0.345 5.345 7 C -0.074 4.074 8 C 0.336 3.664 9 O -0.479 6.479 10 C -0.262 4.262 11 C -0.010 4.010 12 C -0.161 4.161 13 C -0.057 4.057 14 C -0.211 4.211 15 C 0.086 3.914 16 O -0.139 6.139 17 C -0.481 4.481 18 H 0.101 0.899 19 C -0.187 4.187 20 N -0.557 5.557 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.262 4.262 26 C -0.065 4.065 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.175 0.825 40 H 0.137 0.863 41 H 0.184 0.816 42 H 0.159 0.841 43 H 0.096 0.904 44 H 0.131 0.869 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -28.419 5.385 -10.131 30.648 hybrid contribution 0.951 -0.404 0.325 1.083 sum -27.468 4.981 -9.806 29.588 Atomic orbital electron populations 1.24020 0.95654 1.02679 1.00473 1.23020 0.96474 0.98572 1.00565 1.20663 0.97881 0.95926 0.98041 1.21791 0.97560 0.97261 0.99321 1.21581 0.91752 0.98497 0.89104 1.47837 1.11135 1.61651 1.13831 1.22140 1.02291 0.99815 0.83121 1.18662 0.82718 0.76927 0.88141 1.90768 1.78090 1.49022 1.30002 1.22909 0.94327 1.09333 0.99611 1.22181 0.92183 0.90518 0.96104 1.18812 0.94173 1.08293 0.94812 1.21336 0.99514 0.94730 0.90089 1.20497 0.90493 1.08412 1.01713 1.19943 0.90476 0.93800 0.87217 1.83458 1.24771 1.69268 1.36360 1.20759 0.89992 1.37676 0.99648 0.89918 1.25335 0.94142 0.96166 1.03030 1.69702 1.08008 1.42963 1.34988 0.85202 0.78420 0.79648 0.77386 1.18965 1.19289 1.18285 1.21218 1.01582 1.09316 0.94107 1.21280 0.92355 0.95090 0.97730 0.88010 0.87480 0.88229 0.89652 0.91310 0.94215 0.90892 0.87589 0.91900 0.91030 0.88996 0.89804 0.82492 0.86295 0.81633 0.84145 0.90379 0.86911 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 14.32 67.78 0.97 -1.07 16 2 C -0.17 -2.19 9.52 25.64 0.24 -1.94 16 3 C -0.09 -1.05 5.66 29.85 0.17 -0.88 16 4 C -0.12 -1.76 5.52 30.60 0.17 -1.59 16 5 C 0.11 1.69 5.41 86.38 0.47 2.16 16 6 N -0.61 -10.62 2.87 -851.98 -2.45 -13.07 16 7 C 0.07 0.62 10.15 127.77 1.30 1.91 16 8 C 0.54 13.57 7.60 86.33 0.66 14.23 16 9 O -0.60 -19.82 15.81 -4.43 -0.07 -19.89 16 10 C -0.24 -5.38 8.60 23.61 0.20 -5.18 16 11 C 0.01 0.27 9.45 23.82 0.23 0.49 16 12 C -0.16 -4.79 5.87 -20.12 -0.12 -4.91 16 13 C -0.04 -1.08 9.40 22.55 0.21 -0.87 16 14 C -0.19 -6.65 9.97 22.34 0.22 -6.43 16 15 C 0.14 6.04 6.66 22.72 0.15 6.19 16 16 O -0.23 -12.06 8.57 -20.22 -0.17 -12.23 16 17 C -0.40 -23.13 9.94 67.94 0.68 -22.45 16 18 H 0.08 4.97 5.41 -2.91 -0.02 4.96 16 19 C 0.01 0.72 5.49 84.86 0.47 1.19 16 20 N -0.92 -53.50 13.96 21.63 0.30 -53.20 16 21 Si 0.97 43.66 28.62 68.60 1.96 45.62 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 25 C -0.24 -10.35 9.14 22.34 0.20 -10.15 16 26 C -0.05 -1.60 9.78 22.55 0.22 -1.38 16 27 H 0.10 0.94 8.06 -2.91 -0.02 0.92 16 28 H 0.11 0.88 7.84 -2.91 -0.02 0.85 16 29 H 0.10 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.08 0.71 7.79 -2.39 -0.02 0.70 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.92 8.07 -2.38 -0.02 0.90 16 35 H 0.06 1.23 7.42 -2.39 -0.02 1.21 16 36 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.09 0.47 8.07 -2.39 -0.02 0.45 16 38 H 0.08 0.67 6.10 -2.39 -0.01 0.66 16 39 H 0.16 2.47 4.22 -2.91 -0.01 2.45 16 40 H 0.12 3.35 7.52 -2.91 -0.02 3.33 16 41 H 0.17 3.03 6.16 -2.91 -0.02 3.01 16 42 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 43 H 0.29 15.30 8.31 -92.71 -0.77 14.52 16 44 H 0.11 5.30 5.62 -2.91 -0.02 5.28 16 45 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -70.54 380.98 6.99 -63.55 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.98 Total: 19.90 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 6.43 Total: -30.68 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -2.15 Total: -66.27 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.24 Total: -32.12 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.96 Total: 45.62 kcal Total: -70.54 6.99 -63.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076490552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.663 kcal (2) G-P(sol) polarization free energy of solvation -70.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds