Wall clock time and date at job start Tue Mar 31 2020 11:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35747 * 116.99947 * 2 1 4 4 C 1.39024 * 119.88256 * 179.97438 * 3 2 1 5 5 C 1.37662 * 120.11904 * 180.02562 * 4 3 2 6 6 C 1.40012 * 119.87759 * 359.97438 * 5 4 3 7 7 C 1.46943 * 120.11473 * 179.97438 * 6 5 4 8 8 C 1.35138 * 119.99574 * 180.02562 * 7 6 5 9 9 C 1.41806 * 119.99288 * 180.02562 * 8 7 6 10 10 O 1.21775 * 120.00490 * 359.37790 * 9 8 7 11 11 N 1.34779 * 119.99790 * 179.37497 * 9 8 7 12 12 C 1.36745 * 120.00188 * 186.02377 * 11 9 8 13 13 H 1.07999 * 120.00151 * 47.96357 * 12 11 9 14 14 C 1.39097 * 119.99921 * 227.96804 * 12 11 9 15 15 N 1.31346 * 119.99874 * 352.39146 * 14 12 11 16 16 Si 1.86804 * 120.00022 * 172.39751 * 14 12 11 17 17 H 1.48499 * 109.46956 * 359.97438 * 16 14 12 18 18 H 1.48509 * 109.47019 * 119.99653 * 16 14 12 19 19 H 1.48498 * 109.46840 * 239.99350 * 16 14 12 20 20 C 1.46501 * 119.99790 * 6.02205 * 11 9 8 21 21 C 1.54969 * 110.92483 * 299.41986 * 20 11 9 22 22 C 1.54269 * 104.15842 * 156.29472 * 21 20 11 23 23 C 1.53876 * 106.64150 * 336.44931 * 22 21 20 24 24 C 1.54269 * 106.59687 * 359.97301 * 23 22 21 25 25 C 1.40008 * 119.76673 * 0.25990 * 6 5 4 26 26 C 1.37653 * 119.88393 * 359.48180 * 25 6 5 27 27 H 1.08993 * 109.47263 * 59.99837 * 1 2 3 28 28 H 1.09004 * 109.46742 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46994 * 299.99751 * 1 2 3 30 30 H 1.08000 * 119.94894 * 0.02562 * 4 3 2 31 31 H 1.07990 * 120.06450 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.00099 * 0.02562 * 7 6 5 33 33 H 1.07990 * 120.00562 * 0.02562 * 8 7 6 34 34 H 0.96997 * 119.99767 * 180.02562 * 15 14 12 35 35 H 1.08998 * 110.67258 * 176.11247 * 20 11 9 36 36 H 1.08997 * 110.47441 * 37.64200 * 21 20 11 37 37 H 1.08995 * 110.52868 * 274.97887 * 21 20 11 38 38 H 1.08998 * 110.03083 * 217.13586 * 22 21 20 39 39 H 1.09004 * 110.02771 * 95.75567 * 22 21 20 40 40 H 1.08996 * 110.02900 * 119.26307 * 23 22 21 41 41 H 1.09001 * 110.02965 * 240.64351 * 23 22 21 42 42 H 1.09004 * 110.48054 * 142.29142 * 24 23 22 43 43 H 1.08995 * 110.48529 * 264.79939 * 24 23 22 44 44 H 1.07998 * 120.05846 * 179.75304 * 25 6 5 45 45 H 1.07998 * 119.94326 * 180.25646 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4337 1.2795 0.0005 5 6 4.0637 2.5034 0.0011 6 6 3.3035 3.6792 0.0005 7 6 3.9706 4.9885 0.0017 8 6 3.2345 6.1218 0.0017 9 6 3.8783 7.3853 0.0022 10 8 5.0943 7.4491 0.0141 11 7 3.1443 8.5156 -0.0105 12 6 3.7608 9.7299 -0.1343 13 1 4.5070 9.8810 -0.9003 14 6 3.4270 10.7703 0.7264 15 7 2.4188 10.6371 1.5577 16 14 4.4123 12.3571 0.6999 17 1 5.4882 12.2547 -0.3185 18 1 3.5154 13.4911 0.3609 19 1 5.0168 12.5867 2.0367 20 6 1.6859 8.4432 0.1082 21 6 1.0751 7.6292 -1.0605 22 6 -0.2755 7.1297 -0.5071 23 6 -0.1477 7.1219 1.0263 24 6 1.2768 7.6163 1.3523 25 6 1.9055 3.6030 0.0050 26 6 1.2856 2.3740 -0.0010 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.0193 0.3720 0.0005 31 1 5.1423 2.5567 0.0011 32 1 5.0491 5.0450 0.0025 33 1 2.1560 6.0653 0.0012 34 1 2.1858 11.3627 2.1576 35 1 1.2531 9.4428 0.1495 36 1 1.7181 6.7867 -1.3152 37 1 0.9187 8.2674 -1.9301 38 1 -0.4781 6.1222 -0.8702 39 1 -1.0760 7.8040 -0.8116 40 1 -0.8856 7.7929 1.4658 41 1 -0.2891 6.1106 1.4075 42 1 1.2678 8.2453 2.2425 43 1 1.9516 6.7715 1.4900 44 1 1.3145 4.5069 0.0086 45 1 0.2073 2.3141 -0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078208090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:49 Heat of formation + Delta-G solvation = -15.408371 kcal Electronic energy + Delta-G solvation = -26608.257968 eV Core-core repulsion = 22977.981570 eV Total energy + Delta-G solvation = -3630.276399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.19138 -39.51263 -37.60617 -36.68053 -34.23600 -32.89798 -31.50062 -31.11061 -29.24647 -28.08117 -27.44881 -26.91959 -25.04833 -23.48444 -22.42639 -21.13380 -19.75493 -19.62382 -18.43147 -18.20067 -17.42334 -16.36889 -15.88826 -15.75936 -15.10663 -15.00610 -14.78997 -14.35988 -14.03771 -13.77509 -13.61633 -13.51503 -13.08447 -12.95422 -12.78427 -12.53294 -12.30381 -12.11827 -11.61081 -11.48254 -11.40808 -11.16171 -11.10514 -10.82588 -10.74684 -10.63402 -10.50486 -10.27582 -10.21931 -10.02914 -9.50023 -9.33742 -9.04614 -8.81452 -8.46050 -7.58742 -7.28309 -6.34470 -4.04691 0.90402 1.36731 2.42225 3.13561 3.19477 3.28089 3.34580 3.88088 4.15764 4.55043 4.68682 4.79603 4.82205 4.93188 4.93575 5.02126 5.13933 5.21362 5.22525 5.32672 5.37708 5.39492 5.48644 5.63820 5.69869 5.94664 6.01179 6.07651 6.10236 6.19420 6.20970 6.23957 6.33917 6.38731 6.41626 6.48456 6.55184 6.65706 6.72161 6.77175 6.99217 7.05997 7.13766 7.29670 7.36094 7.53442 8.34506 8.59558 9.21671 9.37316 10.05402 10.70919 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.003523 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.385134 B = 7945.390117 C = 8916.373933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.118 3.882 4 C -0.151 4.151 5 C -0.069 4.069 6 C -0.082 4.082 7 C -0.080 4.080 8 C -0.183 4.183 9 C 0.487 3.513 10 O -0.586 6.586 11 N -0.427 5.427 12 C -0.306 4.306 13 H 0.086 0.914 14 C 0.045 3.955 15 N -0.870 5.870 16 Si 0.920 3.080 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.280 1.280 20 C 0.152 3.848 21 C -0.162 4.162 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.073 4.073 26 C -0.205 4.205 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.268 0.732 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.130 0.870 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 -15.458 -2.125 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.073 3.927 4 C -0.170 4.170 5 C -0.087 4.087 6 C -0.082 4.082 7 C -0.100 4.100 8 C -0.203 4.203 9 C 0.279 3.721 10 O -0.472 6.472 11 N -0.144 5.144 12 C -0.435 4.435 13 H 0.104 0.896 14 C -0.160 4.160 15 N -0.507 5.507 16 Si 0.746 3.254 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.206 1.206 20 C 0.047 3.953 21 C -0.200 4.200 22 C -0.159 4.159 23 C -0.161 4.161 24 C -0.178 4.178 25 C -0.091 4.091 26 C -0.224 4.224 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.158 0.842 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.148 0.852 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.003 -15.429 -1.977 17.493 hybrid contribution -0.100 1.006 0.164 1.025 sum -8.103 -14.423 -1.812 16.642 Atomic orbital electron populations 1.23042 0.78544 1.03719 1.01486 1.86006 1.21289 1.27249 1.88780 1.19171 0.92354 0.83968 0.97184 1.20307 0.91179 0.98558 1.06955 1.21181 0.99953 0.90644 0.96929 1.19097 0.92894 0.93425 1.02817 1.22169 1.00080 0.89869 0.97932 1.23127 1.01439 0.94081 1.01654 1.17118 0.87491 0.84841 0.82658 1.90647 1.13899 1.87745 1.54866 1.43321 1.04096 1.05013 1.61982 1.19380 1.21644 0.87202 1.15248 0.89625 1.25600 0.95945 1.00110 0.94385 1.69783 1.25515 1.33413 1.21969 0.85979 0.79989 0.80886 0.78503 1.19157 1.20852 1.20565 1.22050 0.82296 1.00284 0.90626 1.23358 0.96437 1.00467 0.99718 1.22072 0.97784 1.00190 0.95854 1.22098 0.98283 1.00216 0.95545 1.23011 0.94705 0.99528 1.00552 1.21277 0.94037 0.97259 0.96544 1.21128 0.99887 0.92189 1.09149 0.92628 0.88428 0.92603 0.85261 0.84890 0.85222 0.84240 0.92180 0.86493 0.90919 0.91926 0.92660 0.92087 0.92022 0.92740 0.90380 0.91565 0.85218 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.57 10.49 -18.95 -0.20 -3.77 16 3 C 0.12 1.46 6.70 -39.00 -0.26 1.20 16 4 C -0.15 -1.84 9.97 -39.50 -0.39 -2.24 16 5 C -0.07 -0.90 9.79 -39.13 -0.38 -1.28 16 6 C -0.08 -1.23 5.87 -105.04 -0.62 -1.85 16 7 C -0.08 -1.43 9.41 -37.16 -0.35 -1.78 16 8 C -0.18 -3.64 5.40 -39.32 -0.21 -3.86 16 9 C 0.49 12.24 6.91 -14.89 -0.10 12.14 16 10 O -0.59 -16.79 16.08 5.12 0.08 -16.71 16 11 N -0.43 -10.86 2.59 -108.72 -0.28 -11.14 16 12 C -0.31 -8.47 8.74 -15.04 -0.13 -8.61 16 13 H 0.09 2.46 7.84 -52.49 -0.41 2.04 16 14 C 0.04 1.18 5.33 -17.44 -0.09 1.08 16 15 N -0.87 -22.72 11.17 55.50 0.62 -22.10 16 16 Si 0.92 20.82 29.56 -169.99 -5.03 15.80 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.15 3.28 2.31 -65.90 -0.15 3.13 16 21 C -0.16 -2.84 5.78 -25.03 -0.14 -2.99 16 22 C -0.12 -1.72 6.68 -25.61 -0.17 -1.89 16 23 C -0.12 -1.84 6.71 -25.61 -0.17 -2.01 16 24 C -0.14 -2.70 5.72 -25.07 -0.14 -2.84 16 25 C -0.07 -1.00 9.40 -39.13 -0.37 -1.37 16 26 C -0.20 -2.46 9.01 -39.50 -0.36 -2.81 16 27 H 0.06 0.36 7.65 -51.93 -0.40 -0.03 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.13 2.42 7.45 -52.48 -0.39 2.03 16 33 H 0.14 2.47 1.51 -52.49 -0.08 2.39 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.12 2.80 6.31 -51.93 -0.33 2.47 16 36 H 0.07 1.29 4.93 -51.93 -0.26 1.03 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 43 H 0.07 1.30 4.83 -51.93 -0.25 1.05 16 44 H 0.13 1.73 6.16 -52.49 -0.32 1.40 16 45 H 0.13 1.21 6.27 -52.49 -0.33 0.88 16 LS Contribution 356.75 15.07 5.38 5.38 Total: -1.00 -31.33 356.75 -8.59 -39.92 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.10 Total: 7.41 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -3.06 Total: -14.78 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.34 Total: -33.24 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.12 Total: -20.48 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.33 -8.59 -39.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.511 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds