Wall clock time and date at job start Tue Mar 31 2020 11:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35747 * 116.99947 * 2 1 4 4 C 1.39024 * 119.88256 * 179.97438 * 3 2 1 5 5 C 1.37662 * 120.11904 * 180.02562 * 4 3 2 6 6 C 1.40012 * 119.87759 * 359.97438 * 5 4 3 7 7 C 1.46943 * 120.11473 * 179.97438 * 6 5 4 8 8 C 1.35138 * 119.99574 * 180.02562 * 7 6 5 9 9 C 1.41806 * 119.99288 * 180.02562 * 8 7 6 10 10 O 1.21775 * 120.00490 * 359.37790 * 9 8 7 11 11 N 1.34779 * 119.99790 * 179.37497 * 9 8 7 12 12 C 1.36745 * 120.00188 * 186.02377 * 11 9 8 13 13 H 1.07999 * 120.00151 * 47.96357 * 12 11 9 14 14 C 1.39097 * 119.99921 * 227.96804 * 12 11 9 15 15 N 1.31346 * 119.99874 * 352.39146 * 14 12 11 16 16 Si 1.86804 * 120.00022 * 172.39751 * 14 12 11 17 17 H 1.48499 * 109.46956 * 359.97438 * 16 14 12 18 18 H 1.48509 * 109.47019 * 119.99653 * 16 14 12 19 19 H 1.48498 * 109.46840 * 239.99350 * 16 14 12 20 20 C 1.46501 * 119.99790 * 6.02205 * 11 9 8 21 21 C 1.54969 * 110.92483 * 299.41986 * 20 11 9 22 22 C 1.54269 * 104.15842 * 156.29472 * 21 20 11 23 23 C 1.53876 * 106.64150 * 336.44931 * 22 21 20 24 24 C 1.54269 * 106.59687 * 359.97301 * 23 22 21 25 25 C 1.40008 * 119.76673 * 0.25990 * 6 5 4 26 26 C 1.37653 * 119.88393 * 359.48180 * 25 6 5 27 27 H 1.08993 * 109.47263 * 59.99837 * 1 2 3 28 28 H 1.09004 * 109.46742 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46994 * 299.99751 * 1 2 3 30 30 H 1.08000 * 119.94894 * 0.02562 * 4 3 2 31 31 H 1.07990 * 120.06450 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.00099 * 0.02562 * 7 6 5 33 33 H 1.07990 * 120.00562 * 0.02562 * 8 7 6 34 34 H 0.96997 * 119.99767 * 180.02562 * 15 14 12 35 35 H 1.08998 * 110.67258 * 176.11247 * 20 11 9 36 36 H 1.08997 * 110.47441 * 37.64200 * 21 20 11 37 37 H 1.08995 * 110.52868 * 274.97887 * 21 20 11 38 38 H 1.08998 * 110.03083 * 217.13586 * 22 21 20 39 39 H 1.09004 * 110.02771 * 95.75567 * 22 21 20 40 40 H 1.08996 * 110.02900 * 119.26307 * 23 22 21 41 41 H 1.09001 * 110.02965 * 240.64351 * 23 22 21 42 42 H 1.09004 * 110.48054 * 142.29142 * 24 23 22 43 43 H 1.08995 * 110.48529 * 264.79939 * 24 23 22 44 44 H 1.07998 * 120.05846 * 179.75304 * 25 6 5 45 45 H 1.07998 * 119.94326 * 180.25646 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4337 1.2795 0.0005 5 6 4.0637 2.5034 0.0011 6 6 3.3035 3.6792 0.0005 7 6 3.9706 4.9885 0.0017 8 6 3.2345 6.1218 0.0017 9 6 3.8783 7.3853 0.0022 10 8 5.0943 7.4491 0.0141 11 7 3.1443 8.5156 -0.0105 12 6 3.7608 9.7299 -0.1343 13 1 4.5070 9.8810 -0.9003 14 6 3.4270 10.7703 0.7264 15 7 2.4188 10.6371 1.5577 16 14 4.4123 12.3571 0.6999 17 1 5.4882 12.2547 -0.3185 18 1 3.5154 13.4911 0.3609 19 1 5.0168 12.5867 2.0367 20 6 1.6859 8.4432 0.1082 21 6 1.0751 7.6292 -1.0605 22 6 -0.2755 7.1297 -0.5071 23 6 -0.1477 7.1219 1.0263 24 6 1.2768 7.6163 1.3523 25 6 1.9055 3.6030 0.0050 26 6 1.2856 2.3740 -0.0010 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.0193 0.3720 0.0005 31 1 5.1423 2.5567 0.0011 32 1 5.0491 5.0450 0.0025 33 1 2.1560 6.0653 0.0012 34 1 2.1858 11.3627 2.1576 35 1 1.2531 9.4428 0.1495 36 1 1.7181 6.7867 -1.3152 37 1 0.9187 8.2674 -1.9301 38 1 -0.4781 6.1222 -0.8702 39 1 -1.0760 7.8040 -0.8116 40 1 -0.8856 7.7929 1.4658 41 1 -0.2891 6.1106 1.4075 42 1 1.2678 8.2453 2.2425 43 1 1.9516 6.7715 1.4900 44 1 1.3145 4.5069 0.0086 45 1 0.2073 2.3141 -0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078208090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:47 Heat of formation + Delta-G solvation = -32.834529 kcal Electronic energy + Delta-G solvation = -26609.013623 eV Core-core repulsion = 22977.981570 eV Total energy + Delta-G solvation = -3631.032054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.41181 -40.90494 -38.60707 -38.34508 -36.02085 -34.31496 -33.42828 -32.08041 -30.41315 -29.46520 -28.65661 -28.06318 -26.76010 -24.87876 -23.50991 -22.43479 -21.22330 -20.96783 -19.93910 -19.43232 -18.96067 -17.73779 -17.25618 -16.61163 -16.56792 -16.43203 -16.11658 -15.77356 -15.48181 -15.42957 -15.03240 -14.65236 -14.36539 -14.22234 -14.10094 -13.75083 -13.70826 -13.29543 -13.08571 -12.98600 -12.82383 -12.60281 -12.35068 -12.24021 -12.09924 -12.06495 -11.92085 -11.87983 -11.67434 -11.24000 -11.09397 -10.74277 -10.59449 -10.46495 -10.00906 -9.29075 -8.70101 -8.34308 -6.14292 -0.33005 0.41234 1.09814 1.35887 1.40054 1.51565 2.26988 2.38488 2.57853 2.91806 3.08886 3.16915 3.75473 3.82174 3.92833 3.94738 3.98365 4.16142 4.25899 4.34298 4.36104 4.45772 4.46999 4.54924 4.62858 4.71583 4.77777 4.79589 4.84273 4.86918 4.93624 5.04396 5.10302 5.16606 5.20646 5.26340 5.30437 5.34169 5.41248 5.48545 5.57963 5.58791 5.71308 5.74337 5.76756 6.27740 6.44352 6.65223 7.19568 7.46307 8.10496 8.68559 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.003523 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.385134 B = 7945.390117 C = 8916.373933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.127 3.873 4 C -0.160 4.160 5 C -0.063 4.063 6 C -0.117 4.117 7 C -0.041 4.041 8 C -0.217 4.217 9 C 0.477 3.523 10 O -0.641 6.641 11 N -0.441 5.441 12 C -0.346 4.346 13 H 0.058 0.942 14 C 0.010 3.990 15 N -0.880 5.880 16 Si 0.980 3.020 17 H -0.276 1.276 18 H -0.263 1.263 19 H -0.278 1.278 20 C 0.146 3.854 21 C -0.157 4.157 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.136 4.136 25 C -0.069 4.069 26 C -0.205 4.205 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.113 0.887 33 H 0.165 0.835 34 H 0.273 0.727 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.136 0.864 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.345 -18.304 -2.144 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.082 3.918 4 C -0.179 4.179 5 C -0.081 4.081 6 C -0.117 4.117 7 C -0.062 4.062 8 C -0.236 4.236 9 C 0.271 3.729 10 O -0.532 6.532 11 N -0.157 5.157 12 C -0.475 4.475 13 H 0.076 0.924 14 C -0.194 4.194 15 N -0.517 5.517 16 Si 0.804 3.196 17 H -0.200 1.200 18 H -0.188 1.188 19 H -0.204 1.204 20 C 0.041 3.959 21 C -0.195 4.195 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.175 4.175 25 C -0.087 4.087 26 C -0.223 4.223 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.084 0.916 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.131 0.869 33 H 0.182 0.818 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.153 0.847 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.852 -18.283 -1.995 21.355 hybrid contribution 0.767 1.613 0.174 1.795 sum -10.085 -16.670 -1.820 19.568 Atomic orbital electron populations 1.23394 0.76315 1.05704 1.02487 1.86016 1.23601 1.26566 1.88162 1.19400 0.92607 0.84692 0.95148 1.20546 0.91766 0.98788 1.06771 1.21353 1.00684 0.90429 0.95603 1.18989 0.93922 0.92146 1.06672 1.22314 0.99391 0.91174 0.93327 1.22799 1.02457 0.91817 1.06561 1.17901 0.87067 0.86575 0.81332 1.90581 1.16200 1.88763 1.57626 1.43544 1.05831 1.04439 1.61934 1.19331 1.22746 0.89158 1.16223 0.92397 1.26263 0.96625 1.02669 0.93839 1.69872 1.25657 1.34275 1.21874 0.85095 0.78620 0.77836 0.78059 1.20026 1.18769 1.20361 1.22116 0.80020 0.99875 0.93840 1.23268 0.98303 0.99804 0.98094 1.22061 0.95579 1.02348 0.94848 1.22067 0.94884 1.01874 0.96319 1.22911 0.97836 0.98539 0.98174 1.21392 0.93330 0.98335 0.95599 1.21383 1.01434 0.91157 1.08364 0.91515 0.86210 0.91585 0.83397 0.83730 0.86882 0.81810 0.91760 0.89521 0.90870 0.92338 0.89178 0.90753 0.91387 0.89664 0.93448 0.91910 0.84680 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -6.04 10.49 -90.72 -0.95 -6.99 16 3 C 0.13 2.66 6.70 22.65 0.15 2.81 16 4 C -0.16 -3.43 9.97 22.32 0.22 -3.20 16 5 C -0.06 -1.51 9.79 22.56 0.22 -1.29 16 6 C -0.12 -3.33 5.87 -20.14 -0.12 -3.45 16 7 C -0.04 -1.49 9.41 23.84 0.22 -1.27 16 8 C -0.22 -8.86 5.40 22.44 0.12 -8.74 16 9 C 0.48 25.48 6.91 85.12 0.59 26.07 16 10 O -0.64 -39.50 16.08 -4.59 -0.07 -39.58 16 11 N -0.44 -23.83 2.59 -616.08 -1.59 -25.42 16 12 C -0.35 -20.47 8.74 84.13 0.74 -19.74 16 13 H 0.06 3.63 7.84 -2.91 -0.02 3.60 16 14 C 0.01 0.54 5.33 84.97 0.45 0.99 16 15 N -0.88 -47.73 11.17 21.69 0.24 -47.49 16 16 Si 0.98 44.35 29.56 68.60 2.03 46.38 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 C 0.15 6.48 2.31 46.31 0.11 6.59 16 21 C -0.16 -5.43 5.78 31.70 0.18 -5.25 16 22 C -0.11 -2.77 6.68 31.32 0.21 -2.56 16 23 C -0.11 -3.08 6.71 31.32 0.21 -2.87 16 24 C -0.14 -5.31 5.72 31.67 0.18 -5.12 16 25 C -0.07 -1.67 9.40 22.56 0.21 -1.46 16 26 C -0.21 -4.05 9.01 22.32 0.20 -3.85 16 27 H 0.07 0.55 7.65 -2.39 -0.02 0.53 16 28 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.07 0.55 7.65 -2.38 -0.02 0.54 16 30 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.14 3.03 8.06 -2.92 -0.02 3.01 16 32 H 0.11 4.43 7.45 -2.91 -0.02 4.41 16 33 H 0.17 5.72 1.51 -2.92 0.00 5.72 16 34 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.09 4.35 6.31 -2.39 -0.02 4.33 16 36 H 0.07 2.55 4.93 -2.39 -0.01 2.54 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 2.09 8.10 -2.38 -0.02 2.07 16 43 H 0.06 2.48 4.83 -2.39 -0.01 2.47 16 44 H 0.14 3.10 6.16 -2.91 -0.02 3.09 16 45 H 0.16 2.12 6.27 -2.91 -0.02 2.10 16 Total: -1.00 -74.25 356.75 5.67 -68.58 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 1.01 Total: 25.61 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 5.02 Total: -21.09 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.35 Total: -72.92 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.03 Total: -46.57 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -74.25 5.67 -68.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.742 kcal (2) G-P(sol) polarization free energy of solvation -74.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds