Wall clock time and date at job start Tue Mar 31 2020 10:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.47260 * 2 1 4 4 C 1.46901 * 110.99743 * 299.10676 * 3 2 1 5 5 C 1.50708 * 109.47172 * 288.75348 * 4 3 2 6 6 H 1.07995 * 119.99849 * 1.45763 * 5 4 3 7 7 C 1.37872 * 119.99703 * 181.45753 * 5 4 3 8 8 N 1.31519 * 119.99766 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00451 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47031 * 89.99982 * 9 7 5 11 11 H 1.48500 * 109.47206 * 209.99996 * 9 7 5 12 12 H 1.48496 * 109.47418 * 330.00020 * 9 7 5 13 13 C 1.46895 * 111.00149 * 63.05682 * 3 2 1 14 14 C 1.50698 * 109.46919 * 66.04768 * 13 3 2 15 15 C 1.35713 * 120.91682 * 260.02170 * 14 13 3 16 16 C 1.41179 * 119.80048 * 179.97438 * 15 14 13 17 17 O 1.21778 * 119.15636 * 180.02562 * 16 15 14 18 18 O 1.34190 * 121.68452 * 359.97438 * 16 15 14 19 19 C 1.35006 * 121.47227 * 0.02562 * 18 16 15 20 20 C 1.38920 * 120.79461 * 179.97438 * 19 18 16 21 21 C 1.37914 * 119.81778 * 179.77227 * 20 19 18 22 22 C 1.50702 * 119.66199 * 180.27109 * 21 20 19 23 23 C 1.38756 * 120.67413 * 0.50238 * 21 20 19 24 24 C 1.50699 * 119.75437 * 179.74373 * 23 21 20 25 25 C 1.36661 * 120.49536 * 359.47232 * 23 21 20 26 26 C 1.39827 * 119.71708 * 0.27341 * 25 23 21 27 27 H 1.09003 * 109.46955 * 302.05862 * 1 2 3 28 28 H 1.09002 * 109.47161 * 62.05838 * 1 2 3 29 29 H 1.09004 * 109.47200 * 182.06398 * 1 2 3 30 30 H 1.08999 * 109.46859 * 239.99860 * 2 1 3 31 31 H 1.08995 * 109.46874 * 120.00055 * 2 1 3 32 32 H 1.08997 * 109.47782 * 48.75254 * 4 3 2 33 33 H 1.08998 * 109.47273 * 168.75731 * 4 3 2 34 34 H 0.96993 * 120.00215 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47422 * 306.04640 * 13 3 2 36 36 H 1.09000 * 109.47531 * 186.04550 * 13 3 2 37 37 H 1.08009 * 120.09543 * 0.02562 * 15 14 13 38 38 H 1.07998 * 120.08609 * 0.02562 * 20 19 18 39 39 H 1.08993 * 109.47211 * 270.23458 * 22 21 20 40 40 H 1.09004 * 109.46813 * 30.23536 * 22 21 20 41 41 H 1.09000 * 109.46878 * 150.22965 * 22 21 20 42 42 H 1.09006 * 109.47066 * 269.73273 * 24 23 21 43 43 H 1.08995 * 109.47790 * 149.73081 * 24 23 21 44 44 H 1.08998 * 109.47008 * 29.72888 * 24 23 21 45 45 H 1.07995 * 120.13959 * 180.24895 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5662 2.1036 -1.1983 5 6 2.3022 1.5820 -2.4055 6 1 3.0164 0.7792 -2.2973 7 6 2.0636 2.1297 -3.6481 8 7 2.7055 1.6741 -4.7018 9 14 0.8276 3.5177 -3.8354 10 1 1.5185 4.8216 -3.6681 11 1 0.2119 3.4534 -5.1852 12 1 -0.2300 3.3817 -2.8020 13 6 1.6094 2.0884 1.2225 14 6 2.2926 1.4666 2.4132 15 6 1.6387 0.5836 3.2097 16 6 2.3017 0.0148 4.3188 17 8 1.7040 -0.7767 5.0254 18 8 3.5740 0.3233 4.6136 19 6 4.2804 1.1942 3.8619 20 6 5.5967 1.5038 4.1804 21 6 6.3012 2.3927 3.3958 22 6 7.7309 2.7214 3.7410 23 6 5.7056 2.9912 2.2947 24 6 6.4929 3.9639 1.4551 25 6 4.4121 2.7009 1.9627 26 6 3.6822 1.7983 2.7423 27 1 -0.3633 0.5455 0.8710 28 1 -0.3633 0.4815 -0.9079 29 1 -0.3634 -1.0270 0.0370 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4954 1.9495 -1.3310 33 1 1.7683 3.1683 -1.0816 34 1 2.5379 2.0596 -5.5759 35 1 0.5287 2.0099 1.3417 36 1 1.8914 3.1388 1.1494 37 1 0.6145 0.3161 2.9952 38 1 6.0683 1.0465 5.0377 39 1 7.7541 3.5746 4.4188 40 1 8.1951 1.8613 4.2235 41 1 8.2775 2.9659 2.8302 42 1 6.3570 4.9729 1.8445 43 1 6.1411 3.9219 0.4243 44 1 7.5500 3.7006 1.4892 45 1 3.9555 3.1670 1.1021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:36 Heat of formation + Delta-G solvation = -28.351639 kcal Electronic energy + Delta-G solvation = -26680.585065 eV Core-core repulsion = 23049.747404 eV Total energy + Delta-G solvation = -3630.837661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87425 -39.32300 -38.09721 -37.37630 -34.92138 -32.61692 -32.29526 -31.89406 -30.00092 -28.55087 -27.74569 -26.62290 -25.57202 -23.31218 -23.17884 -22.52425 -21.60616 -19.41762 -18.65197 -17.80371 -17.27331 -16.82700 -16.68179 -15.57134 -15.19085 -15.05802 -14.80696 -14.57390 -14.43417 -14.25679 -13.82484 -13.66949 -13.17638 -13.03808 -12.95299 -12.84192 -12.66464 -12.51742 -12.14755 -12.12167 -11.80088 -11.66234 -11.55051 -11.31445 -11.23341 -11.14466 -10.79057 -10.63967 -10.31189 -10.12212 -10.04004 -9.91873 -9.41036 -8.70024 -8.65077 -8.24215 -7.55910 -6.13264 -4.11110 0.24273 1.03780 1.55478 2.45112 2.83560 3.19662 3.28095 3.29114 3.64552 4.14432 4.26402 4.32827 4.39600 4.61510 4.67669 4.82790 4.94057 4.96834 5.18722 5.24945 5.30523 5.35372 5.40906 5.51442 5.56290 5.59964 5.61322 5.69364 5.70490 5.81245 5.90682 5.91543 5.94371 6.00835 6.08014 6.21050 6.29697 6.36913 6.47878 6.62840 6.64201 6.78127 6.91820 7.22800 7.44614 7.52101 7.69251 7.82746 8.54012 8.96294 9.47492 10.99792 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.004685 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.320674 B = 5975.616511 C = 7783.577715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 N -0.514 5.514 4 C 0.158 3.842 5 C -0.507 4.507 6 H 0.081 0.919 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.068 3.932 14 C 0.064 3.936 15 C -0.267 4.267 16 C 0.514 3.486 17 O -0.478 6.478 18 O -0.275 6.275 19 C 0.140 3.860 20 C -0.141 4.141 21 C -0.033 4.033 22 C -0.121 4.121 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.029 4.029 26 C -0.141 4.141 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.001 0.999 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.158 0.842 38 H 0.139 0.861 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 4.767 15.644 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.074 4.074 3 N -0.237 5.237 4 C 0.032 3.968 5 C -0.545 4.545 6 H 0.099 0.901 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.060 4.060 14 C 0.062 3.938 15 C -0.287 4.287 16 C 0.365 3.635 17 O -0.367 6.367 18 O -0.187 6.187 19 C 0.096 3.904 20 C -0.159 4.159 21 C -0.034 4.034 22 C -0.177 4.177 23 C -0.111 4.111 24 C -0.174 4.174 25 C -0.046 4.046 26 C -0.142 4.142 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.018 0.982 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.176 0.824 38 H 0.157 0.843 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.939 4.321 15.906 17.520 hybrid contribution -1.796 0.673 -0.385 1.956 sum 4.143 4.993 15.522 16.823 Atomic orbital electron populations 1.22411 0.99084 1.01617 1.01827 1.22089 0.92308 0.90575 1.02438 1.62304 1.59002 1.02087 1.00302 1.20304 0.94838 0.93600 0.88021 1.20947 1.23930 1.20350 0.89301 0.90106 1.24868 0.95772 0.96674 0.95819 1.69882 1.42128 1.42396 0.99262 0.86929 0.82265 0.83207 0.77730 1.20148 1.21177 1.19317 1.21313 0.97250 0.98690 0.88707 1.21643 0.90734 0.89106 0.92289 1.22384 1.03638 1.04172 0.98544 1.19182 0.78079 0.81113 0.85163 1.90946 1.59868 1.33749 1.52148 1.83490 1.27887 1.54417 1.52867 1.19033 0.91445 0.89899 0.90054 1.20263 0.91026 1.01965 1.02646 1.19729 0.96186 0.94057 0.93380 1.20951 0.91596 1.02420 1.02736 1.19539 0.94770 1.00096 0.96704 1.20883 0.99623 0.97261 0.99624 1.20970 0.92966 0.93572 0.97132 1.18952 0.94759 1.02887 0.97573 0.93570 0.91418 0.92694 0.89189 0.92466 0.98158 0.95948 0.92594 0.92778 0.89188 0.82404 0.84314 0.90508 0.91134 0.90318 0.91141 0.90568 0.91048 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 9.27 37.16 0.34 -2.69 16 2 C 0.05 0.96 5.68 -3.82 -0.02 0.94 16 3 N -0.51 -9.46 4.65 -237.52 -1.11 -10.56 16 4 C 0.16 3.42 3.64 -4.97 -0.02 3.40 16 5 C -0.51 -13.34 9.15 -34.44 -0.31 -13.66 16 6 H 0.08 2.36 7.66 -52.49 -0.40 1.96 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -26.33 13.96 55.43 0.77 -25.56 16 9 Si 0.87 20.21 27.44 -169.99 -4.66 15.54 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -5.95 6.58 56.52 0.37 -5.58 16 13 C 0.07 1.01 4.29 -4.98 -0.02 0.99 16 14 C 0.06 0.92 4.78 -102.15 -0.49 0.43 16 15 C -0.27 -3.87 8.58 -39.37 -0.34 -4.21 16 16 C 0.51 8.36 7.89 31.85 0.25 8.61 16 17 O -0.48 -8.94 17.91 -19.59 -0.35 -9.29 16 18 O -0.27 -4.26 9.82 -20.66 -0.20 -4.46 16 19 C 0.14 1.95 6.76 -38.45 -0.26 1.69 16 20 C -0.14 -1.61 9.64 -39.45 -0.38 -1.99 16 21 C -0.03 -0.34 5.88 -104.55 -0.61 -0.96 16 22 C -0.12 -0.85 9.58 36.01 0.34 -0.51 16 23 C -0.11 -1.26 5.84 -105.00 -0.61 -1.88 16 24 C -0.12 -1.09 9.58 36.01 0.35 -0.74 16 25 C -0.03 -0.38 9.01 -39.56 -0.36 -0.73 16 26 C -0.14 -1.99 5.87 -105.04 -0.62 -2.61 16 27 H 0.05 0.66 6.06 -51.93 -0.31 0.34 16 28 H 0.07 1.20 6.30 -51.93 -0.33 0.87 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.81 7.18 -51.93 -0.37 1.44 16 31 H 0.06 0.95 6.48 -51.93 -0.34 0.62 16 32 H 0.00 0.02 5.01 -51.93 -0.26 -0.24 16 33 H 0.02 0.48 7.17 -51.93 -0.37 0.10 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.05 0.76 5.95 -51.93 -0.31 0.45 16 36 H 0.09 1.24 6.90 -51.93 -0.36 0.88 16 37 H 0.16 2.10 7.86 -52.48 -0.41 1.69 16 38 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 41 H 0.08 0.50 5.90 -51.93 -0.31 0.19 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.07 0.55 5.89 -51.93 -0.31 0.25 16 45 H 0.15 2.01 6.77 -52.49 -0.36 1.65 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -30.67 357.57 -9.14 -39.81 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.13 Total: 1.22 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -2.86 Total: -12.09 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.33 Total: -36.12 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.55 Total: -13.75 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.66 Total: 15.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.67 -9.14 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.459 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds