Wall clock time and date at job start Tue Mar 31 2020 10:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.47260 * 2 1 4 4 C 1.46901 * 110.99743 * 299.10676 * 3 2 1 5 5 C 1.50708 * 109.47172 * 288.75348 * 4 3 2 6 6 H 1.07995 * 119.99849 * 1.45763 * 5 4 3 7 7 C 1.37872 * 119.99703 * 181.45753 * 5 4 3 8 8 N 1.31519 * 119.99766 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00451 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47031 * 89.99982 * 9 7 5 11 11 H 1.48500 * 109.47206 * 209.99996 * 9 7 5 12 12 H 1.48496 * 109.47418 * 330.00020 * 9 7 5 13 13 C 1.46895 * 111.00149 * 63.05682 * 3 2 1 14 14 C 1.50698 * 109.46919 * 66.04768 * 13 3 2 15 15 C 1.35713 * 120.91682 * 260.02170 * 14 13 3 16 16 C 1.41179 * 119.80048 * 179.97438 * 15 14 13 17 17 O 1.21778 * 119.15636 * 180.02562 * 16 15 14 18 18 O 1.34190 * 121.68452 * 359.97438 * 16 15 14 19 19 C 1.35006 * 121.47227 * 0.02562 * 18 16 15 20 20 C 1.38920 * 120.79461 * 179.97438 * 19 18 16 21 21 C 1.37914 * 119.81778 * 179.77227 * 20 19 18 22 22 C 1.50702 * 119.66199 * 180.27109 * 21 20 19 23 23 C 1.38756 * 120.67413 * 0.50238 * 21 20 19 24 24 C 1.50699 * 119.75437 * 179.74373 * 23 21 20 25 25 C 1.36661 * 120.49536 * 359.47232 * 23 21 20 26 26 C 1.39827 * 119.71708 * 0.27341 * 25 23 21 27 27 H 1.09003 * 109.46955 * 302.05862 * 1 2 3 28 28 H 1.09002 * 109.47161 * 62.05838 * 1 2 3 29 29 H 1.09004 * 109.47200 * 182.06398 * 1 2 3 30 30 H 1.08999 * 109.46859 * 239.99860 * 2 1 3 31 31 H 1.08995 * 109.46874 * 120.00055 * 2 1 3 32 32 H 1.08997 * 109.47782 * 48.75254 * 4 3 2 33 33 H 1.08998 * 109.47273 * 168.75731 * 4 3 2 34 34 H 0.96993 * 120.00215 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47422 * 306.04640 * 13 3 2 36 36 H 1.09000 * 109.47531 * 186.04550 * 13 3 2 37 37 H 1.08009 * 120.09543 * 0.02562 * 15 14 13 38 38 H 1.07998 * 120.08609 * 0.02562 * 20 19 18 39 39 H 1.08993 * 109.47211 * 270.23458 * 22 21 20 40 40 H 1.09004 * 109.46813 * 30.23536 * 22 21 20 41 41 H 1.09000 * 109.46878 * 150.22965 * 22 21 20 42 42 H 1.09006 * 109.47066 * 269.73273 * 24 23 21 43 43 H 1.08995 * 109.47790 * 149.73081 * 24 23 21 44 44 H 1.08998 * 109.47008 * 29.72888 * 24 23 21 45 45 H 1.07995 * 120.13959 * 180.24895 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5662 2.1036 -1.1983 5 6 2.3022 1.5820 -2.4055 6 1 3.0164 0.7792 -2.2973 7 6 2.0636 2.1297 -3.6481 8 7 2.7055 1.6741 -4.7018 9 14 0.8276 3.5177 -3.8354 10 1 1.5185 4.8216 -3.6681 11 1 0.2119 3.4534 -5.1852 12 1 -0.2300 3.3817 -2.8020 13 6 1.6094 2.0884 1.2225 14 6 2.2926 1.4666 2.4132 15 6 1.6387 0.5836 3.2097 16 6 2.3017 0.0148 4.3188 17 8 1.7040 -0.7767 5.0254 18 8 3.5740 0.3233 4.6136 19 6 4.2804 1.1942 3.8619 20 6 5.5967 1.5038 4.1804 21 6 6.3012 2.3927 3.3958 22 6 7.7309 2.7214 3.7410 23 6 5.7056 2.9912 2.2947 24 6 6.4929 3.9639 1.4551 25 6 4.4121 2.7009 1.9627 26 6 3.6822 1.7983 2.7423 27 1 -0.3633 0.5455 0.8710 28 1 -0.3633 0.4815 -0.9079 29 1 -0.3634 -1.0270 0.0370 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4954 1.9495 -1.3310 33 1 1.7683 3.1683 -1.0816 34 1 2.5379 2.0596 -5.5759 35 1 0.5287 2.0099 1.3417 36 1 1.8914 3.1388 1.1494 37 1 0.6145 0.3161 2.9952 38 1 6.0683 1.0465 5.0377 39 1 7.7541 3.5746 4.4188 40 1 8.1951 1.8613 4.2235 41 1 8.2775 2.9659 2.8302 42 1 6.3570 4.9729 1.8445 43 1 6.1411 3.9219 0.4243 44 1 7.5500 3.7006 1.4892 45 1 3.9555 3.1670 1.1021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:36 Heat of formation + Delta-G solvation = -45.312557 kcal Electronic energy + Delta-G solvation = -26681.320545 eV Core-core repulsion = 23049.747404 eV Total energy + Delta-G solvation = -3631.573141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.00748 -40.36546 -39.47473 -38.57348 -36.15652 -34.56660 -33.22241 -32.85509 -31.43259 -30.17434 -28.61146 -27.62560 -26.93789 -24.84496 -24.23679 -23.55539 -22.94498 -20.87765 -19.72674 -18.92577 -18.79588 -18.34246 -17.90893 -16.85472 -16.70098 -16.36044 -16.07595 -15.80611 -15.47440 -15.22202 -14.98487 -14.87753 -14.53310 -14.50221 -14.15452 -13.87948 -13.61863 -13.54453 -13.37469 -13.32030 -13.02513 -12.91974 -12.73598 -12.47256 -12.43458 -12.29414 -12.21325 -12.10533 -11.91051 -11.60997 -11.47911 -11.29680 -11.10061 -10.72544 -9.67505 -9.25870 -9.02478 -8.23153 -6.25743 -0.84242 0.01507 0.51873 1.32727 1.38160 1.40292 1.49380 1.71464 2.37690 2.61914 3.01235 3.10801 3.15626 3.29395 3.41063 3.78481 3.90325 3.99956 4.10970 4.16956 4.20545 4.32731 4.40025 4.43796 4.54531 4.57799 4.70213 4.73084 4.75687 4.78953 4.85969 4.91611 4.96839 5.00501 5.06226 5.08985 5.19887 5.21913 5.22639 5.34736 5.41008 5.57656 5.59754 5.75313 5.95999 6.06251 6.27870 6.33814 6.61525 6.81058 7.37061 8.93681 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.004685 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.320674 B = 5975.616511 C = 7783.577715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.057 3.943 3 N -0.526 5.526 4 C 0.168 3.832 5 C -0.506 4.506 6 H 0.034 0.966 7 C 0.010 3.990 8 N -0.951 5.951 9 Si 0.942 3.058 10 H -0.263 1.263 11 H -0.290 1.290 12 H -0.247 1.247 13 C 0.071 3.929 14 C 0.071 3.929 15 C -0.269 4.269 16 C 0.512 3.488 17 O -0.513 6.513 18 O -0.281 6.281 19 C 0.119 3.881 20 C -0.141 4.141 21 C -0.024 4.024 22 C -0.121 4.121 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.044 4.044 26 C -0.158 4.158 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.006 0.994 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.160 0.840 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.788 6.878 17.220 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.071 4.071 3 N -0.250 5.250 4 C 0.042 3.958 5 C -0.545 4.545 6 H 0.052 0.948 7 C -0.187 4.187 8 N -0.592 5.592 9 Si 0.765 3.235 10 H -0.188 1.188 11 H -0.216 1.216 12 H -0.170 1.170 13 C -0.056 4.056 14 C 0.069 3.931 15 C -0.289 4.289 16 C 0.365 3.635 17 O -0.405 6.405 18 O -0.193 6.193 19 C 0.075 3.925 20 C -0.159 4.159 21 C -0.024 4.024 22 C -0.176 4.176 23 C -0.112 4.112 24 C -0.173 4.173 25 C -0.062 4.062 26 C -0.159 4.159 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.023 0.977 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.188 0.812 38 H 0.177 0.823 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.136 6.442 17.508 19.638 hybrid contribution -1.635 -0.007 -0.843 1.840 sum 4.501 6.435 16.664 18.422 Atomic orbital electron populations 1.22326 0.97220 1.02815 1.01820 1.21982 0.93829 0.90147 1.01154 1.62091 1.59811 1.02327 1.00743 1.20053 0.94165 0.94116 0.87480 1.21174 1.22953 1.18824 0.91514 0.94783 1.25775 0.97977 0.99655 0.95317 1.70055 1.44572 1.44595 0.99965 0.85801 0.79982 0.79796 0.77881 1.18801 1.21604 1.17005 1.21345 0.98258 0.99027 0.86953 1.21609 0.90953 0.88678 0.91841 1.22376 1.04133 1.04253 0.98135 1.19381 0.78235 0.80716 0.85173 1.90920 1.60823 1.35433 1.53350 1.83442 1.27714 1.54822 1.53333 1.19378 0.92342 0.90360 0.90395 1.20623 0.90078 1.01870 1.03346 1.20137 0.97677 0.92471 0.92160 1.21072 0.89066 1.03726 1.03785 1.19873 0.94251 1.00027 0.97067 1.20944 1.00306 0.97715 0.98338 1.21005 0.93986 0.94059 0.97122 1.19055 0.94889 1.03744 0.98217 0.91317 0.93259 0.91223 0.92771 0.91440 0.97683 0.94666 0.92642 0.91108 0.87785 0.81193 0.82263 0.88586 0.89866 0.89294 0.89320 0.92090 0.89118 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.58 9.27 71.98 0.67 -4.91 16 2 C 0.06 2.03 5.68 86.30 0.49 2.52 16 3 N -0.53 -19.14 4.65 -905.38 -4.21 -23.36 16 4 C 0.17 7.14 3.64 85.56 0.31 7.45 16 5 C -0.51 -27.33 9.15 25.60 0.23 -27.10 16 6 H 0.03 2.10 7.66 -2.91 -0.02 2.08 16 7 C 0.01 0.54 5.47 84.65 0.46 1.00 16 8 N -0.95 -57.57 13.96 21.45 0.30 -57.27 16 9 Si 0.94 41.23 27.44 68.60 1.88 43.12 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.25 -9.85 6.58 99.48 0.65 -9.19 16 13 C 0.07 2.00 4.29 85.56 0.37 2.36 16 14 C 0.07 1.97 4.78 -18.26 -0.09 1.88 16 15 C -0.27 -7.57 8.58 22.41 0.19 -7.38 16 16 C 0.51 16.65 7.89 68.54 0.54 17.20 16 17 O -0.51 -19.39 17.91 19.02 0.34 -19.05 16 18 O -0.28 -8.68 9.82 15.18 0.15 -8.53 16 19 C 0.12 3.23 6.76 23.01 0.16 3.38 16 20 C -0.14 -2.96 9.64 22.36 0.22 -2.75 16 21 C -0.02 -0.44 5.88 -19.82 -0.12 -0.55 16 22 C -0.12 -1.24 9.58 71.24 0.68 -0.55 16 23 C -0.11 -2.34 5.84 -20.11 -0.12 -2.46 16 24 C -0.12 -1.90 9.58 71.24 0.68 -1.21 16 25 C -0.04 -1.12 9.01 22.29 0.20 -0.92 16 26 C -0.16 -4.37 5.87 -20.14 -0.12 -4.49 16 27 H 0.07 1.77 6.06 -2.39 -0.01 1.76 16 28 H 0.05 1.68 6.30 -2.39 -0.02 1.67 16 29 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.05 2.29 7.18 -2.39 -0.02 2.27 16 31 H 0.07 2.24 6.48 -2.39 -0.02 2.23 16 32 H 0.01 0.23 5.01 -2.39 -0.01 0.22 16 33 H 0.04 1.42 7.17 -2.39 -0.02 1.40 16 34 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.07 1.78 5.95 -2.39 -0.01 1.77 16 36 H 0.10 2.64 6.90 -2.39 -0.02 2.62 16 37 H 0.17 4.26 7.86 -2.91 -0.02 4.24 16 38 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 41 H 0.09 0.77 5.90 -2.39 -0.01 0.76 16 42 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 44 H 0.09 1.12 5.89 -2.39 -0.01 1.10 16 45 H 0.14 3.73 6.77 -2.91 -0.02 3.71 16 Total: -1.00 -69.14 357.57 4.19 -64.95 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.96 Total: 16.66 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.76 Total: -16.54 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.91 Total: -80.62 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: 0.49 Total: -27.57 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.88 Total: 43.12 kcal Total: -69.14 4.19 -64.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.642 kcal (2) G-P(sol) polarization free energy of solvation -69.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds