Wall clock time and date at job start Tue Mar 31 2020 10:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47161 * 2 1 4 4 C 1.36983 * 120.00541 * 259.85467 * 3 2 1 5 5 H 1.07990 * 120.00289 * 198.06373 * 4 3 2 6 6 C 1.38979 * 119.99303 * 18.06488 * 4 3 2 7 7 N 1.31405 * 120.00283 * 15.10127 * 6 4 3 8 8 Si 1.86804 * 119.99414 * 195.10005 * 6 4 3 9 9 H 1.48493 * 109.47220 * 60.00130 * 8 6 4 10 10 H 1.48495 * 109.46747 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46913 * 299.99800 * 8 6 4 12 12 C 1.34781 * 119.99665 * 79.85291 * 3 2 1 13 13 O 1.21636 * 119.99955 * 180.47246 * 12 3 2 14 14 C 1.47356 * 120.00217 * 0.47947 * 12 3 2 15 15 C 1.41324 * 126.41790 * 351.77555 * 14 12 3 16 16 N 1.30444 * 108.02174 * 179.70286 * 15 14 12 17 17 N 1.39928 * 108.91707 * 0.44456 * 16 15 14 18 18 C 1.46502 * 125.75486 * 179.81451 * 17 16 15 19 19 C 1.52998 * 109.47541 * 89.35998 * 18 17 16 20 20 C 1.53002 * 109.47268 * 293.66345 * 19 18 17 21 21 C 1.52999 * 109.47493 * 173.66065 * 19 18 17 22 22 C 1.34288 * 108.49951 * 359.54675 * 17 16 15 23 23 C 1.50699 * 126.30365 * 180.28479 * 22 17 16 24 24 F 1.39905 * 109.46910 * 295.41796 * 23 22 17 25 25 F 1.39903 * 109.46984 * 55.41043 * 23 22 17 26 26 H 1.09004 * 109.47403 * 60.00096 * 1 2 3 27 27 H 1.09004 * 109.46940 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47203 * 299.99668 * 1 2 3 29 29 H 1.09002 * 109.47199 * 239.99813 * 2 1 3 30 30 H 1.08997 * 109.47212 * 120.00220 * 2 1 3 31 31 H 0.97000 * 119.99801 * 180.02562 * 7 6 4 32 32 H 1.07996 * 125.98775 * 359.96076 * 15 14 12 33 33 H 1.09010 * 109.46601 * 329.36529 * 18 17 16 34 34 H 1.08996 * 109.47399 * 209.37057 * 18 17 16 35 35 H 1.09007 * 109.46651 * 53.65659 * 19 18 17 36 36 H 1.08999 * 109.46900 * 175.82512 * 20 19 18 37 37 H 1.08996 * 109.46834 * 295.82132 * 20 19 18 38 38 H 1.09000 * 109.47434 * 55.82234 * 20 19 18 39 39 H 1.08995 * 109.47001 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.46556 * 300.00497 * 21 19 18 41 41 H 1.09000 * 109.46849 * 60.00137 * 21 19 18 42 42 H 1.08994 * 109.47563 * 175.41478 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.4436 1.9573 -1.1677 5 1 3.0633 2.8413 -1.1393 6 6 2.0777 1.4042 -2.3890 7 7 1.1011 0.5268 -2.4467 8 14 2.9742 1.9079 -3.9485 9 1 4.4154 1.5739 -3.8208 10 1 2.3978 1.1804 -5.1077 11 1 2.8215 3.3703 -4.1568 12 6 2.0490 2.0850 1.1490 13 8 2.4464 3.2346 1.1476 14 6 1.6014 1.4618 2.4070 15 6 0.9680 0.2057 2.5422 16 7 0.7347 0.0057 3.8099 17 7 1.1913 1.1117 4.5352 18 6 1.1095 1.2752 5.9888 19 6 2.3650 0.6909 6.6393 20 6 2.3883 -0.8249 6.4324 21 6 2.3547 1.0010 8.1375 22 6 1.7225 1.9956 3.6750 23 6 2.3379 3.3251 4.0283 24 9 1.3569 4.1648 4.5666 25 9 3.3548 3.1328 4.9697 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.8460 0.1405 -3.2991 32 1 0.7239 -0.4718 1.7373 33 1 0.2293 0.7531 6.3641 34 1 1.0342 2.3351 6.2316 35 1 3.2503 1.1336 6.1826 36 1 3.3179 -1.2316 6.8304 37 1 1.5427 -1.2755 6.9519 38 1 2.3209 -1.0473 5.3674 39 1 3.2493 0.5851 8.6008 40 1 2.3381 2.0809 8.2848 41 1 1.4694 0.5583 8.5940 42 1 2.7551 3.7822 3.1311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089621819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:52 Heat of formation + Delta-G solvation = -31.273174 kcal Electronic energy + Delta-G solvation = -28062.272034 eV Core-core repulsion = 23909.370907 eV Total energy + Delta-G solvation = -4152.901127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.87263 -46.85165 -41.20559 -38.41891 -36.43643 -35.35587 -32.65685 -31.54175 -30.76003 -29.79321 -27.29910 -26.86854 -25.74561 -24.78533 -22.48322 -21.65531 -21.17714 -19.98922 -19.08397 -17.44969 -17.14782 -17.02272 -16.67498 -16.30270 -15.27888 -15.20092 -14.74471 -14.56718 -14.32642 -14.01229 -13.89625 -13.77156 -13.25860 -13.22361 -13.10044 -12.73584 -12.50573 -12.42143 -12.21368 -11.97110 -11.64628 -11.46878 -11.37359 -11.18979 -11.09615 -11.09282 -10.87109 -10.84884 -10.45734 -10.38223 -10.24346 -10.06696 -9.23691 -8.99749 -8.56604 -8.24742 -7.78077 -6.39573 -3.91539 1.63811 2.48553 2.65547 3.18515 3.21159 3.24838 3.72849 4.04147 4.25716 4.37749 4.43913 4.58547 4.77471 4.85176 5.03513 5.07892 5.14781 5.20960 5.26983 5.38851 5.45361 5.52358 5.65613 5.67802 5.73028 5.80336 5.90860 6.00317 6.07520 6.13182 6.23343 6.45718 6.48831 6.67173 6.79045 6.98502 7.19262 7.39527 7.68678 7.81957 8.03552 8.42663 9.07927 9.32068 9.89285 10.58254 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.004170 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.750718 B = 6713.202415 C = 7424.982287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.420 5.420 4 C -0.299 4.299 5 H 0.104 0.896 6 C 0.029 3.971 7 N -0.869 5.869 8 Si 0.929 3.071 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.505 3.495 13 O -0.601 6.601 14 C -0.204 4.204 15 C 0.041 3.959 16 N -0.287 5.287 17 N -0.344 5.344 18 C 0.131 3.869 19 C -0.117 4.117 20 C -0.146 4.146 21 C -0.142 4.142 22 C 0.036 3.964 23 C 0.327 3.673 24 F -0.200 7.200 25 F -0.202 7.202 26 H 0.099 0.901 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.106 0.894 30 H 0.046 0.954 31 H 0.269 0.731 32 H 0.227 0.773 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -2.918 13.894 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.135 5.135 4 C -0.427 4.427 5 H 0.122 0.878 6 C -0.174 4.174 7 N -0.509 5.509 8 Si 0.756 3.244 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.295 3.705 13 O -0.489 6.489 14 C -0.219 4.219 15 C -0.144 4.144 16 N -0.108 5.108 17 N -0.125 5.125 18 C 0.010 3.990 19 C -0.136 4.136 20 C -0.203 4.203 21 C -0.200 4.200 22 C -0.095 4.095 23 C 0.272 3.728 24 F -0.181 7.181 25 F -0.183 7.183 26 H 0.118 0.882 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.124 0.876 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.242 0.758 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.281 -3.279 14.735 15.098 hybrid contribution 0.468 0.593 -1.187 1.407 sum 0.187 -2.685 13.548 13.813 Atomic orbital electron populations 1.22444 0.96488 1.00464 1.03206 1.21877 0.94499 0.84056 1.01355 1.43514 1.53079 1.10665 1.06266 1.19745 1.28418 1.12524 0.81968 0.87792 1.25328 0.95700 0.96973 0.99378 1.70000 1.24980 1.29290 1.26587 0.85941 0.79517 0.78926 0.80033 1.19878 1.20912 1.19765 1.16910 0.85286 0.85619 0.82706 1.90487 1.54734 1.17812 1.85877 1.20497 1.10664 0.97383 0.93378 1.25844 0.96931 0.97024 0.94584 1.77137 1.21810 1.06557 1.05296 1.48359 1.44465 1.13140 1.06540 1.21949 1.00149 1.02506 0.74427 1.21593 0.97982 0.97548 0.96475 1.21831 1.01413 0.94096 1.02995 1.21751 1.02275 1.01780 0.94191 1.21633 1.02701 0.94085 0.91096 1.20689 0.77120 0.85110 0.89858 1.92977 1.64121 1.72709 1.88319 1.92961 1.60663 1.95711 1.69003 0.88200 0.93677 0.94359 0.87588 0.93645 0.92011 0.75764 0.88419 0.89031 0.89841 0.92757 0.92610 0.91620 0.91941 0.92321 0.92386 0.81505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 8.06 37.16 0.30 -3.01 16 2 C 0.11 2.23 4.78 -4.05 -0.02 2.21 16 3 N -0.42 -10.32 2.65 -116.05 -0.31 -10.62 16 4 C -0.30 -7.86 9.36 -14.98 -0.14 -8.00 16 5 H 0.10 2.86 7.35 -52.49 -0.39 2.48 16 6 C 0.03 0.72 5.03 -17.46 -0.09 0.64 16 7 N -0.87 -21.04 8.45 55.50 0.47 -20.57 16 8 Si 0.93 19.61 29.58 -169.99 -5.03 14.58 16 9 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 10 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 12 C 0.51 12.27 7.52 -12.55 -0.09 12.18 16 13 O -0.60 -15.84 14.22 5.25 0.07 -15.77 16 14 C -0.20 -4.21 5.83 -105.06 -0.61 -4.82 16 15 C 0.04 0.75 8.20 -16.97 -0.14 0.61 16 16 N -0.29 -4.99 11.41 30.87 0.35 -4.64 16 17 N -0.34 -5.65 3.23 -56.58 -0.18 -5.83 16 18 C 0.13 1.65 5.34 -4.04 -0.02 1.63 16 19 C -0.12 -1.31 3.10 -90.62 -0.28 -1.60 16 20 C -0.15 -1.66 9.13 37.16 0.34 -1.32 16 21 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 22 C 0.04 0.67 6.45 -81.57 -0.53 0.15 16 23 C 0.33 5.65 5.12 36.01 0.18 5.83 16 24 F -0.20 -3.36 16.68 2.25 0.04 -3.32 16 25 F -0.20 -3.20 15.69 2.25 0.04 -3.16 16 26 H 0.10 2.27 6.26 -51.93 -0.32 1.95 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.74 5.69 -51.93 -0.30 0.44 16 29 H 0.11 2.39 5.96 -51.93 -0.31 2.08 16 30 H 0.05 0.86 5.08 -51.93 -0.26 0.60 16 31 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 32 H 0.23 3.87 3.18 -52.49 -0.17 3.71 16 33 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.09 1.10 7.18 -51.93 -0.37 0.73 16 35 H 0.08 1.09 6.76 -51.93 -0.35 0.74 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.91 6.73 -51.93 -0.35 0.56 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.17 3.14 5.66 -51.93 -0.29 2.84 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -28.02 335.49 -5.46 -33.48 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.21 Total: 7.16 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.76 Total: 3.63 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.33 Total: -41.66 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.07 Total: -15.77 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.07 Total: -6.48 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.02 -5.46 -33.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089621819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.211 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds