Wall clock time and date at job start Tue Mar 31 2020 10:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47161 * 2 1 4 4 C 1.36983 * 120.00541 * 259.85467 * 3 2 1 5 5 H 1.07990 * 120.00289 * 198.06373 * 4 3 2 6 6 C 1.38979 * 119.99303 * 18.06488 * 4 3 2 7 7 N 1.31405 * 120.00283 * 15.10127 * 6 4 3 8 8 Si 1.86804 * 119.99414 * 195.10005 * 6 4 3 9 9 H 1.48493 * 109.47220 * 60.00130 * 8 6 4 10 10 H 1.48495 * 109.46747 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46913 * 299.99800 * 8 6 4 12 12 C 1.34781 * 119.99665 * 79.85291 * 3 2 1 13 13 O 1.21636 * 119.99955 * 180.47246 * 12 3 2 14 14 C 1.47356 * 120.00217 * 0.47947 * 12 3 2 15 15 C 1.41324 * 126.41790 * 351.77555 * 14 12 3 16 16 N 1.30444 * 108.02174 * 179.70286 * 15 14 12 17 17 N 1.39928 * 108.91707 * 0.44456 * 16 15 14 18 18 C 1.46502 * 125.75486 * 179.81451 * 17 16 15 19 19 C 1.52998 * 109.47541 * 89.35998 * 18 17 16 20 20 C 1.53002 * 109.47268 * 293.66345 * 19 18 17 21 21 C 1.52999 * 109.47493 * 173.66065 * 19 18 17 22 22 C 1.34288 * 108.49951 * 359.54675 * 17 16 15 23 23 C 1.50699 * 126.30365 * 180.28479 * 22 17 16 24 24 F 1.39905 * 109.46910 * 295.41796 * 23 22 17 25 25 F 1.39903 * 109.46984 * 55.41043 * 23 22 17 26 26 H 1.09004 * 109.47403 * 60.00096 * 1 2 3 27 27 H 1.09004 * 109.46940 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47203 * 299.99668 * 1 2 3 29 29 H 1.09002 * 109.47199 * 239.99813 * 2 1 3 30 30 H 1.08997 * 109.47212 * 120.00220 * 2 1 3 31 31 H 0.97000 * 119.99801 * 180.02562 * 7 6 4 32 32 H 1.07996 * 125.98775 * 359.96076 * 15 14 12 33 33 H 1.09010 * 109.46601 * 329.36529 * 18 17 16 34 34 H 1.08996 * 109.47399 * 209.37057 * 18 17 16 35 35 H 1.09007 * 109.46651 * 53.65659 * 19 18 17 36 36 H 1.08999 * 109.46900 * 175.82512 * 20 19 18 37 37 H 1.08996 * 109.46834 * 295.82132 * 20 19 18 38 38 H 1.09000 * 109.47434 * 55.82234 * 20 19 18 39 39 H 1.08995 * 109.47001 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.46556 * 300.00497 * 21 19 18 41 41 H 1.09000 * 109.46849 * 60.00137 * 21 19 18 42 42 H 1.08994 * 109.47563 * 175.41478 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.4436 1.9573 -1.1677 5 1 3.0633 2.8413 -1.1393 6 6 2.0777 1.4042 -2.3890 7 7 1.1011 0.5268 -2.4467 8 14 2.9742 1.9079 -3.9485 9 1 4.4154 1.5739 -3.8208 10 1 2.3978 1.1804 -5.1077 11 1 2.8215 3.3703 -4.1568 12 6 2.0490 2.0850 1.1490 13 8 2.4464 3.2346 1.1476 14 6 1.6014 1.4618 2.4070 15 6 0.9680 0.2057 2.5422 16 7 0.7347 0.0057 3.8099 17 7 1.1913 1.1117 4.5352 18 6 1.1095 1.2752 5.9888 19 6 2.3650 0.6909 6.6393 20 6 2.3883 -0.8249 6.4324 21 6 2.3547 1.0010 8.1375 22 6 1.7225 1.9956 3.6750 23 6 2.3379 3.3251 4.0283 24 9 1.3569 4.1648 4.5666 25 9 3.3548 3.1328 4.9697 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.8460 0.1405 -3.2991 32 1 0.7239 -0.4718 1.7373 33 1 0.2293 0.7531 6.3641 34 1 1.0342 2.3351 6.2316 35 1 3.2503 1.1336 6.1826 36 1 3.3179 -1.2316 6.8304 37 1 1.5427 -1.2755 6.9519 38 1 2.3209 -1.0473 5.3674 39 1 3.2493 0.5851 8.6008 40 1 2.3381 2.0809 8.2848 41 1 1.4694 0.5583 8.5940 42 1 2.7551 3.7822 3.1311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089621819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:51 Heat of formation + Delta-G solvation = -46.181309 kcal Electronic energy + Delta-G solvation = -28062.918499 eV Core-core repulsion = 23909.370907 eV Total energy + Delta-G solvation = -4153.547592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.25908 -48.22524 -42.66394 -40.16454 -37.46852 -37.18915 -34.27201 -33.11026 -32.24844 -31.45196 -28.35690 -28.08107 -27.00725 -26.54457 -24.15566 -23.23418 -22.43435 -21.15642 -20.63401 -19.02895 -18.66924 -18.53106 -18.20431 -17.83713 -16.69486 -16.54888 -16.21007 -16.02549 -15.76707 -15.63191 -15.48772 -15.11985 -14.69674 -14.60815 -14.41646 -13.93234 -13.87606 -13.67632 -13.39190 -13.21188 -13.01647 -12.96609 -12.84084 -12.81217 -12.54685 -12.36875 -12.11053 -12.07389 -11.97380 -11.79499 -11.75933 -11.72390 -10.89854 -10.58786 -10.42717 -9.76672 -9.62747 -8.26933 -5.88071 0.14835 1.11897 1.17683 1.47572 1.49826 1.56580 2.29484 2.30293 2.46676 2.90937 3.04303 3.18621 3.43737 3.63577 3.66663 3.80860 3.87419 3.99245 4.08298 4.16323 4.34137 4.38846 4.43971 4.56407 4.61175 4.76451 4.82139 4.84615 4.91946 4.95924 5.13074 5.14632 5.29478 5.32463 5.34269 5.43779 5.49627 5.66947 5.95123 6.12438 6.37533 6.55812 7.17047 7.45868 8.02580 8.68497 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.004170 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.750718 B = 6713.202415 C = 7424.982287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.108 3.892 3 N -0.432 5.432 4 C -0.341 4.341 5 H 0.077 0.923 6 C 0.004 3.996 7 N -0.871 5.871 8 Si 0.988 3.012 9 H -0.271 1.271 10 H -0.270 1.270 11 H -0.279 1.279 12 C 0.495 3.505 13 O -0.636 6.636 14 C -0.234 4.234 15 C 0.044 3.956 16 N -0.280 5.280 17 N -0.330 5.330 18 C 0.118 3.882 19 C -0.112 4.112 20 C -0.143 4.143 21 C -0.136 4.136 22 C 0.040 3.960 23 C 0.338 3.662 24 F -0.195 7.195 25 F -0.191 7.191 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.275 0.725 32 H 0.236 0.764 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -4.187 15.507 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.015 4.015 3 N -0.147 5.147 4 C -0.469 4.469 5 H 0.095 0.905 6 C -0.199 4.199 7 N -0.509 5.509 8 Si 0.812 3.188 9 H -0.196 1.196 10 H -0.195 1.195 11 H -0.205 1.205 12 C 0.286 3.714 13 O -0.526 6.526 14 C -0.250 4.250 15 C -0.140 4.140 16 N -0.101 5.101 17 N -0.110 5.110 18 C -0.001 4.001 19 C -0.132 4.132 20 C -0.201 4.201 21 C -0.194 4.194 22 C -0.094 4.094 23 C 0.283 3.717 24 F -0.176 7.176 25 F -0.172 7.172 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.251 0.749 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.887 -4.593 16.375 17.030 hybrid contribution 0.630 0.986 -1.556 1.947 sum -0.257 -3.607 14.819 15.254 Atomic orbital electron populations 1.22280 0.95286 1.02081 1.01678 1.21964 0.95398 0.82482 1.01647 1.43704 1.53226 1.11813 1.05940 1.19663 1.30350 1.13252 0.83642 0.90467 1.25961 0.95951 0.96760 1.01192 1.70085 1.24569 1.28827 1.27431 0.85073 0.78551 0.78146 0.77003 1.19622 1.19452 1.20489 1.17440 0.84681 0.85465 0.83810 1.90445 1.56130 1.19338 1.86716 1.20247 1.13178 0.98940 0.92608 1.25840 0.96696 0.96254 0.95213 1.77128 1.21528 1.06670 1.04764 1.48719 1.42462 1.12022 1.07770 1.22425 1.01926 1.03665 0.72074 1.21568 0.96181 0.97241 0.98173 1.21808 1.02677 0.94241 1.01348 1.21724 1.03539 1.02306 0.91840 1.21723 1.02136 0.94531 0.91031 1.20306 0.77246 0.84590 0.89604 1.92986 1.63936 1.72517 1.88172 1.92984 1.60175 1.95627 1.68455 0.91258 0.90396 0.94193 0.89150 0.91315 0.91477 0.74895 0.86249 0.88197 0.91858 0.91730 0.91156 0.94349 0.91065 0.91923 0.90770 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.02 8.06 71.98 0.58 -5.44 16 2 C 0.11 4.56 4.78 86.38 0.41 4.97 16 3 N -0.43 -21.90 2.65 -639.32 -1.70 -23.60 16 4 C -0.34 -18.69 9.36 84.07 0.79 -17.90 16 5 H 0.08 4.53 7.35 -2.92 -0.02 4.50 16 6 C 0.00 0.22 5.03 84.93 0.43 0.65 16 7 N -0.87 -42.23 8.45 21.67 0.18 -42.05 16 8 Si 0.99 40.55 29.58 68.60 2.03 42.58 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 10 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 C 0.50 24.93 7.52 86.64 0.65 25.58 16 13 O -0.64 -35.20 14.22 -4.14 -0.06 -35.26 16 14 C -0.23 -9.74 5.83 -20.15 -0.12 -9.86 16 15 C 0.04 1.57 8.20 85.66 0.70 2.28 16 16 N -0.28 -9.23 11.41 -56.26 -0.64 -9.87 16 17 N -0.33 -10.29 3.23 -332.92 -1.07 -11.36 16 18 C 0.12 2.68 5.34 86.38 0.46 3.14 16 19 C -0.11 -2.25 3.10 -10.79 -0.03 -2.28 16 20 C -0.14 -2.90 9.13 71.98 0.66 -2.25 16 21 C -0.14 -1.87 9.19 71.98 0.66 -1.21 16 22 C 0.04 1.45 6.45 42.15 0.27 1.72 16 23 C 0.34 11.63 5.12 71.24 0.36 12.00 16 24 F -0.19 -6.39 16.68 44.97 0.75 -5.64 16 25 F -0.19 -5.90 15.69 44.97 0.71 -5.20 16 26 H 0.07 3.15 6.26 -2.38 -0.01 3.14 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.04 1.52 5.69 -2.39 -0.01 1.50 16 29 H 0.09 4.10 5.96 -2.39 -0.01 4.08 16 30 H 0.07 2.57 5.08 -2.39 -0.01 2.55 16 31 H 0.28 12.52 8.31 -92.71 -0.77 11.75 16 32 H 0.24 7.73 3.18 -2.91 -0.01 7.72 16 33 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.10 2.14 7.18 -2.39 -0.02 2.12 16 35 H 0.06 1.54 6.76 -2.38 -0.02 1.53 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 0.99 6.73 -2.39 -0.02 0.97 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.15 5.84 5.66 -2.39 -0.01 5.82 16 Total: -1.00 -61.92 335.49 7.09 -54.83 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 1.07 Total: 24.16 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 5.83 Total: 11.40 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -3.23 Total: -86.88 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.06 Total: -35.26 kcal Atomic # 9 Polarization: -12.29 SS G_CDS: 1.46 Total: -10.84 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -61.92 7.09 -54.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089621819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.652 kcal (2) G-P(sol) polarization free energy of solvation -61.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds