Wall clock time and date at job start Tue Mar 31 2020 11:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35956 * 117.00030 * 2 1 4 4 C 1.38311 * 120.06807 * 359.97438 * 3 2 1 5 5 C 1.38694 * 120.62398 * 179.72640 * 4 3 2 6 6 C 1.37739 * 120.32001 * 0.02562 * 5 4 3 7 7 C 1.39512 * 119.70423 * 359.97438 * 6 5 4 8 8 C 1.46777 * 134.29668 * 180.02562 * 7 6 5 9 9 C 1.34005 * 106.19051 * 179.97438 * 8 7 6 10 10 C 1.50704 * 124.93393 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.46761 * 89.98661 * 10 9 8 12 12 C 1.46902 * 110.99556 * 170.00036 * 11 10 9 13 13 C 1.50699 * 109.47411 * 284.05407 * 12 11 10 14 14 H 1.08003 * 119.99703 * 4.77888 * 13 12 11 15 15 C 1.37876 * 120.00295 * 184.77438 * 13 12 11 16 16 N 1.31509 * 120.00081 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99815 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47488 * 89.99891 * 17 15 13 19 19 H 1.48508 * 109.46929 * 210.00029 * 17 15 13 20 20 H 1.48504 * 109.47007 * 329.99423 * 17 15 13 21 21 C 1.46898 * 111.00433 * 293.95127 * 11 10 9 22 22 C 1.52997 * 109.47417 * 163.92297 * 21 11 10 23 23 C 1.53007 * 117.49586 * 245.32288 * 22 21 11 24 24 C 1.53002 * 117.49621 * 176.66322 * 22 21 11 25 25 O 1.34422 * 110.13346 * 0.02562 * 9 8 7 26 26 C 1.34892 * 110.87303 * 359.97438 * 25 9 8 27 27 H 1.09003 * 109.47602 * 300.00142 * 1 2 3 28 28 H 1.09001 * 109.46996 * 60.00166 * 1 2 3 29 29 H 1.09005 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.68522 * 359.75095 * 4 3 2 31 31 H 1.08000 * 119.83811 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.14162 * 179.97438 * 6 5 4 33 33 H 1.08000 * 126.90816 * 359.96059 * 8 7 6 34 34 H 1.08996 * 109.47344 * 209.98496 * 10 9 8 35 35 H 1.09000 * 109.46971 * 329.99130 * 10 9 8 36 36 H 1.08993 * 109.47293 * 44.05878 * 12 11 10 37 37 H 1.09005 * 109.47037 * 164.05518 * 12 11 10 38 38 H 0.96995 * 120.00060 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.47286 * 283.92702 * 21 11 10 40 40 H 1.09002 * 109.47003 * 43.92061 * 21 11 10 41 41 H 1.08993 * 115.54799 * 30.98883 * 22 21 11 42 42 H 1.08996 * 117.49824 * 359.97438 * 23 22 21 43 43 H 1.08997 * 117.49147 * 145.01941 * 23 22 21 44 44 H 1.08997 * 117.49665 * 214.97586 * 24 22 21 45 45 H 1.08992 * 117.50110 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3722 -0.0005 5 6 1.9119 3.6141 0.0052 6 6 3.2862 3.7072 0.0109 7 6 4.0578 2.5449 0.0115 8 6 5.5000 2.2719 0.0172 9 6 5.6278 0.9380 0.0152 10 6 6.9400 0.1968 0.0189 11 7 7.3610 -0.0464 1.4051 12 6 8.5052 -0.9664 1.4539 13 6 8.0295 -2.3737 1.2010 14 1 6.9961 -2.5567 0.9457 15 6 8.9133 -3.4278 1.2954 16 7 10.1717 -3.2049 1.6056 17 14 8.3235 -5.1721 0.9811 18 1 8.4784 -5.4950 -0.4600 19 1 9.1302 -6.1207 1.7905 20 1 6.8932 -5.2875 1.3633 21 6 7.6706 1.2155 2.0904 22 6 7.7116 0.9787 3.6013 23 6 6.6476 1.6726 4.4543 24 6 8.0977 2.1616 4.4916 25 8 4.4156 0.3570 0.0082 26 6 3.4375 1.2859 0.0060 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2161 2.3111 -0.0050 31 1 1.3124 4.5124 0.0042 32 1 3.7641 4.6756 0.0149 33 1 6.2978 2.9998 0.0219 34 1 6.8206 -0.7559 -0.4970 35 1 7.6960 0.7939 -0.4910 36 1 9.2304 -0.6852 0.6903 37 1 8.9733 -0.9122 2.4369 38 1 10.7933 -3.9465 1.6724 39 1 8.6399 1.5835 1.7538 40 1 6.9018 1.9528 1.8589 41 1 8.0381 -0.0134 3.9129 42 1 5.9187 2.2981 3.9390 43 1 6.2746 1.1370 5.3272 44 1 8.6779 1.9477 5.3891 45 1 8.3221 3.1086 4.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:42 Heat of formation + Delta-G solvation = 26.982511 kcal Electronic energy + Delta-G solvation = -26124.583975 eV Core-core repulsion = 22496.145783 eV Total energy + Delta-G solvation = -3628.438192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.28991 -39.51659 -37.82843 -36.84896 -35.60283 -32.79584 -32.06780 -30.41085 -29.60818 -27.65961 -27.57674 -26.43271 -23.92054 -22.86267 -22.04637 -21.69369 -21.34642 -20.54454 -19.45239 -17.95234 -17.43361 -16.60245 -16.28578 -16.11102 -15.45009 -15.37074 -15.10236 -14.90694 -14.68510 -14.23085 -13.62549 -13.55821 -13.28189 -12.93700 -12.90238 -12.42571 -12.37740 -12.26022 -12.02535 -11.63447 -11.39133 -11.36103 -11.29799 -11.20509 -10.93007 -10.80657 -10.66433 -10.53755 -10.01268 -9.73964 -9.63577 -9.49313 -9.22202 -8.43817 -8.38537 -7.77218 -7.35897 -6.02412 -4.03623 0.99446 1.36299 2.51071 2.87451 3.14729 3.33875 3.40184 3.46381 3.69742 4.19602 4.44658 4.51802 4.70322 4.82429 4.82739 4.95371 4.98460 5.15632 5.22176 5.24939 5.31692 5.33262 5.35032 5.41759 5.49126 5.59796 5.67231 5.83561 5.91893 5.94985 6.05327 6.07984 6.14975 6.22215 6.24903 6.25478 6.41001 6.43992 6.48402 6.69931 6.81130 7.04074 7.15465 7.24799 7.51635 7.80643 8.02986 8.11191 8.48390 9.04442 9.60980 11.07946 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.011153 B = 0.004094 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.856129 B = 6838.084356 C = 8401.919893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.148 3.852 4 C -0.202 4.202 5 C -0.099 4.099 6 C -0.116 4.116 7 C -0.082 4.082 8 C -0.235 4.235 9 C 0.090 3.910 10 C 0.125 3.875 11 N -0.527 5.527 12 C 0.193 3.807 13 C -0.507 4.507 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.076 3.924 22 C -0.129 4.129 23 C -0.179 4.179 24 C -0.188 4.188 25 O -0.170 6.170 26 C 0.022 3.978 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.156 0.844 34 H 0.106 0.894 35 H 0.062 0.938 36 H -0.007 1.007 37 H 0.042 0.958 38 H 0.261 0.739 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.074 14.378 -2.109 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.102 3.898 4 C -0.221 4.221 5 C -0.117 4.117 6 C -0.134 4.134 7 C -0.083 4.083 8 C -0.255 4.255 9 C 0.041 3.959 10 C -0.003 4.003 11 N -0.252 5.252 12 C 0.069 3.931 13 C -0.546 4.546 14 H 0.083 0.917 15 C -0.144 4.144 16 N -0.539 5.539 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.052 4.052 22 C -0.148 4.148 23 C -0.216 4.216 24 C -0.225 4.225 25 O -0.070 6.070 26 C -0.026 4.026 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.174 0.826 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.011 0.989 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.133 0.867 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.255 13.544 -1.832 20.482 hybrid contribution 0.202 -0.343 -0.451 0.602 sum -15.053 13.201 -2.283 20.151 Atomic orbital electron populations 1.23073 0.78338 1.04108 1.01211 1.86208 1.21347 1.26236 1.88658 1.17742 0.86853 0.85421 0.99765 1.20831 0.99572 0.91134 1.10605 1.20689 0.94091 0.96736 1.00230 1.20378 0.92964 0.96727 1.03346 1.19732 0.93265 0.92611 1.02712 1.22146 0.93995 0.95169 1.14172 1.22807 0.85479 0.91793 0.95856 1.20670 0.86245 1.00405 0.92996 1.62048 1.40561 1.11133 1.11441 1.19831 0.85609 0.90282 0.97379 1.21186 0.96153 0.90643 1.46609 0.91743 1.24955 0.94819 0.99249 0.95389 1.69947 1.03208 1.31807 1.48906 0.86527 0.78902 0.84139 0.78083 1.20718 1.21304 1.19701 1.21758 0.98697 0.92575 0.92169 1.22287 1.02384 0.97424 0.92675 1.22923 0.91741 1.04166 1.02742 1.22930 0.98402 0.98856 1.02352 1.84123 1.13164 1.34806 1.74867 1.18733 0.87671 0.87632 1.08519 0.92576 0.92639 0.88126 0.84679 0.85407 0.85585 0.82642 0.87595 0.91995 0.98937 0.93982 0.92926 0.95141 0.91375 0.86747 0.89431 0.89388 0.89215 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.54 10.50 -19.60 -0.21 -4.75 16 3 C 0.15 2.20 6.70 -39.15 -0.26 1.94 16 4 C -0.20 -2.32 9.03 -39.39 -0.36 -2.67 16 5 C -0.10 -1.06 10.03 -39.60 -0.40 -1.46 16 6 C -0.12 -1.41 10.10 -39.29 -0.40 -1.81 16 7 C -0.08 -1.25 6.39 -105.18 -0.67 -1.93 16 8 C -0.23 -3.61 9.27 -37.62 -0.35 -3.96 16 9 C 0.09 1.61 6.21 -35.79 -0.22 1.39 16 10 C 0.12 2.36 5.29 -4.97 -0.03 2.33 16 11 N -0.53 -11.17 4.37 -237.52 -1.04 -12.21 16 12 C 0.19 4.85 4.55 -4.98 -0.02 4.83 16 13 C -0.51 -14.07 8.62 -34.44 -0.30 -14.37 16 14 H 0.06 1.81 7.67 -52.48 -0.40 1.41 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 17 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.08 1.38 5.10 -3.83 -0.02 1.36 16 22 C -0.13 -2.28 5.58 -90.62 -0.51 -2.79 16 23 C -0.18 -2.73 10.18 -26.69 -0.27 -3.00 16 24 C -0.19 -2.69 10.25 -26.69 -0.27 -2.97 16 25 O -0.17 -3.33 10.58 3.75 0.04 -3.29 16 26 C 0.02 0.39 7.35 -38.38 -0.28 0.11 16 27 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.14 1.12 6.26 -52.49 -0.33 0.79 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.16 2.01 7.93 -52.49 -0.42 1.59 16 34 H 0.11 2.16 7.34 -51.93 -0.38 1.78 16 35 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 36 H -0.01 -0.19 8.00 -51.93 -0.42 -0.60 16 37 H 0.04 1.13 6.46 -51.93 -0.34 0.79 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 40 H 0.07 1.13 5.19 -51.93 -0.27 0.86 16 41 H 0.11 2.33 6.88 -51.93 -0.36 1.97 16 42 H 0.09 1.30 8.04 -51.93 -0.42 0.88 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -31.64 371.75 -9.98 -41.62 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.63 Total: 2.11 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -3.46 Total: -20.25 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.30 Total: -37.77 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.17 Total: -8.03 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.64 -9.98 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.599 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds