Wall clock time and date at job start Tue Mar 31 2020 11:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35956 * 117.00030 * 2 1 4 4 C 1.38311 * 120.06807 * 359.97438 * 3 2 1 5 5 C 1.38694 * 120.62398 * 179.72640 * 4 3 2 6 6 C 1.37739 * 120.32001 * 0.02562 * 5 4 3 7 7 C 1.39512 * 119.70423 * 359.97438 * 6 5 4 8 8 C 1.46777 * 134.29668 * 180.02562 * 7 6 5 9 9 C 1.34005 * 106.19051 * 179.97438 * 8 7 6 10 10 C 1.50704 * 124.93393 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.46761 * 89.98661 * 10 9 8 12 12 C 1.46902 * 110.99556 * 170.00036 * 11 10 9 13 13 C 1.50699 * 109.47411 * 284.05407 * 12 11 10 14 14 H 1.08003 * 119.99703 * 4.77888 * 13 12 11 15 15 C 1.37876 * 120.00295 * 184.77438 * 13 12 11 16 16 N 1.31509 * 120.00081 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99815 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47488 * 89.99891 * 17 15 13 19 19 H 1.48508 * 109.46929 * 210.00029 * 17 15 13 20 20 H 1.48504 * 109.47007 * 329.99423 * 17 15 13 21 21 C 1.46898 * 111.00433 * 293.95127 * 11 10 9 22 22 C 1.52997 * 109.47417 * 163.92297 * 21 11 10 23 23 C 1.53007 * 117.49586 * 245.32288 * 22 21 11 24 24 C 1.53002 * 117.49621 * 176.66322 * 22 21 11 25 25 O 1.34422 * 110.13346 * 0.02562 * 9 8 7 26 26 C 1.34892 * 110.87303 * 359.97438 * 25 9 8 27 27 H 1.09003 * 109.47602 * 300.00142 * 1 2 3 28 28 H 1.09001 * 109.46996 * 60.00166 * 1 2 3 29 29 H 1.09005 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.68522 * 359.75095 * 4 3 2 31 31 H 1.08000 * 119.83811 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.14162 * 179.97438 * 6 5 4 33 33 H 1.08000 * 126.90816 * 359.96059 * 8 7 6 34 34 H 1.08996 * 109.47344 * 209.98496 * 10 9 8 35 35 H 1.09000 * 109.46971 * 329.99130 * 10 9 8 36 36 H 1.08993 * 109.47293 * 44.05878 * 12 11 10 37 37 H 1.09005 * 109.47037 * 164.05518 * 12 11 10 38 38 H 0.96995 * 120.00060 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.47286 * 283.92702 * 21 11 10 40 40 H 1.09002 * 109.47003 * 43.92061 * 21 11 10 41 41 H 1.08993 * 115.54799 * 30.98883 * 22 21 11 42 42 H 1.08996 * 117.49824 * 359.97438 * 23 22 21 43 43 H 1.08997 * 117.49147 * 145.01941 * 23 22 21 44 44 H 1.08997 * 117.49665 * 214.97586 * 24 22 21 45 45 H 1.08992 * 117.50110 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3722 -0.0005 5 6 1.9119 3.6141 0.0052 6 6 3.2862 3.7072 0.0109 7 6 4.0578 2.5449 0.0115 8 6 5.5000 2.2719 0.0172 9 6 5.6278 0.9380 0.0152 10 6 6.9400 0.1968 0.0189 11 7 7.3610 -0.0464 1.4051 12 6 8.5052 -0.9664 1.4539 13 6 8.0295 -2.3737 1.2010 14 1 6.9961 -2.5567 0.9457 15 6 8.9133 -3.4278 1.2954 16 7 10.1717 -3.2049 1.6056 17 14 8.3235 -5.1721 0.9811 18 1 8.4784 -5.4950 -0.4600 19 1 9.1302 -6.1207 1.7905 20 1 6.8932 -5.2875 1.3633 21 6 7.6706 1.2155 2.0904 22 6 7.7116 0.9787 3.6013 23 6 6.6476 1.6726 4.4543 24 6 8.0977 2.1616 4.4916 25 8 4.4156 0.3570 0.0082 26 6 3.4375 1.2859 0.0060 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2161 2.3111 -0.0050 31 1 1.3124 4.5124 0.0042 32 1 3.7641 4.6756 0.0149 33 1 6.2978 2.9998 0.0219 34 1 6.8206 -0.7559 -0.4970 35 1 7.6960 0.7939 -0.4910 36 1 9.2304 -0.6852 0.6903 37 1 8.9733 -0.9122 2.4369 38 1 10.7933 -3.9465 1.6724 39 1 8.6399 1.5835 1.7538 40 1 6.9018 1.9528 1.8589 41 1 8.0381 -0.0134 3.9129 42 1 5.9187 2.2981 3.9390 43 1 6.2746 1.1370 5.3272 44 1 8.6779 1.9477 5.3891 45 1 8.3221 3.1086 4.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:41 Heat of formation + Delta-G solvation = 8.253499 kcal Electronic energy + Delta-G solvation = -26125.396126 eV Core-core repulsion = 22496.145783 eV Total energy + Delta-G solvation = -3629.250343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.47242 -40.49717 -39.29958 -37.83335 -37.07156 -34.79175 -33.41515 -31.52873 -30.72094 -29.44506 -28.58377 -27.65101 -25.66214 -23.97746 -23.37828 -23.11385 -22.43449 -21.83553 -20.93981 -18.98396 -18.67374 -18.43131 -17.50807 -17.37128 -16.75982 -16.66723 -16.35376 -16.12004 -16.01085 -15.64765 -15.07980 -14.97915 -14.35839 -14.32060 -14.09654 -14.04530 -13.68824 -13.36065 -13.27066 -13.20368 -12.82589 -12.63532 -12.53512 -12.38237 -12.28720 -12.23103 -12.17806 -12.15844 -11.75364 -11.39014 -11.13652 -10.84036 -10.66990 -10.58870 -9.53160 -9.07422 -8.77936 -8.20619 -6.29624 -0.06362 0.36251 1.30697 1.38443 1.39175 1.51423 1.73399 2.28393 2.39292 2.71628 2.90482 3.10914 3.27336 3.43608 3.81584 3.89838 3.91510 4.03784 4.08097 4.18849 4.25258 4.31342 4.39133 4.40174 4.40373 4.42337 4.53800 4.65458 4.69323 4.70938 4.74216 4.77783 4.78738 5.02645 5.13511 5.16168 5.20299 5.22155 5.28086 5.39649 5.41090 5.48600 5.64979 5.74838 6.00963 6.06932 6.27543 6.46539 6.57790 6.84326 7.39303 8.89367 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.011153 B = 0.004094 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.856129 B = 6838.084356 C = 8401.919893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.348 6.348 3 C 0.120 3.880 4 C -0.186 4.186 5 C -0.089 4.089 6 C -0.115 4.115 7 C -0.099 4.099 8 C -0.209 4.209 9 C 0.055 3.945 10 C 0.130 3.870 11 N -0.541 5.541 12 C 0.212 3.788 13 C -0.523 4.523 14 H 0.051 0.949 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.960 3.040 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.274 1.274 21 C 0.083 3.917 22 C -0.166 4.166 23 C -0.170 4.170 24 C -0.159 4.159 25 O -0.210 6.210 26 C -0.018 4.018 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.171 0.829 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.182 0.818 34 H 0.076 0.924 35 H 0.080 0.920 36 H -0.027 1.027 37 H 0.019 0.981 38 H 0.265 0.735 39 H 0.032 0.968 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.517 17.298 -2.042 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.263 6.263 3 C 0.075 3.925 4 C -0.204 4.204 5 C -0.106 4.106 6 C -0.133 4.133 7 C -0.100 4.100 8 C -0.229 4.229 9 C 0.006 3.994 10 C 0.003 3.997 11 N -0.266 5.266 12 C 0.087 3.913 13 C -0.562 4.562 14 H 0.070 0.930 15 C -0.189 4.189 16 N -0.570 5.570 17 Si 0.785 3.215 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.198 1.198 21 C -0.044 4.044 22 C -0.185 4.185 23 C -0.207 4.207 24 C -0.197 4.197 25 O -0.112 6.112 26 C -0.065 4.065 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.130 0.870 30 H 0.188 0.812 31 H 0.190 0.810 32 H 0.174 0.826 33 H 0.199 0.801 34 H 0.095 0.905 35 H 0.098 0.902 36 H -0.009 1.009 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.714 16.485 -1.768 24.262 hybrid contribution 0.775 -1.150 -0.476 1.466 sum -16.939 15.335 -2.244 22.959 Atomic orbital electron populations 1.23408 0.75695 1.05599 1.02920 1.86156 1.24256 1.26894 1.88958 1.18160 0.86468 0.86712 1.01161 1.21347 1.01158 0.90228 1.07712 1.21259 0.93874 0.97910 0.97603 1.20825 0.93684 0.96743 1.02053 1.20005 0.93028 0.93127 1.03848 1.22445 0.95133 0.94293 1.11038 1.22502 0.84648 0.92596 0.99629 1.20493 0.87992 0.99653 0.91562 1.61905 1.38706 1.12643 1.13351 1.19405 0.86364 0.90422 0.95140 1.21432 0.95638 0.92400 1.46702 0.93034 1.25751 0.94898 1.03242 0.95014 1.70049 1.04189 1.33102 1.49621 0.85522 0.78205 0.79305 0.78443 1.19639 1.20339 1.19839 1.21763 0.99227 0.91287 0.92128 1.22159 1.06061 0.97229 0.93035 1.22976 0.92309 1.03458 1.01972 1.23034 0.97490 0.97786 1.01358 1.84027 1.14190 1.36689 1.76250 1.19427 0.88556 0.88163 1.10337 0.90900 0.90643 0.87030 0.81201 0.80985 0.82595 0.80058 0.90508 0.90207 1.00935 0.96296 0.92613 0.94993 0.89525 0.90563 0.88577 0.89021 0.88126 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.35 -10.23 10.50 -93.06 -0.98 -11.21 16 3 C 0.12 3.51 6.70 22.55 0.15 3.66 16 4 C -0.19 -3.62 9.03 22.40 0.20 -3.42 16 5 C -0.09 -1.47 10.03 22.26 0.22 -1.24 16 6 C -0.11 -2.38 10.10 22.46 0.23 -2.15 16 7 C -0.10 -2.90 6.39 -20.22 -0.13 -3.03 16 8 C -0.21 -6.30 9.27 23.54 0.22 -6.09 16 9 C 0.05 2.04 6.21 24.72 0.15 2.20 16 10 C 0.13 5.28 5.29 85.56 0.45 5.73 16 11 N -0.54 -24.37 4.37 -905.36 -3.96 -28.33 16 12 C 0.21 11.40 4.55 85.56 0.39 11.79 16 13 C -0.52 -30.71 8.62 25.60 0.22 -30.49 16 14 H 0.05 3.09 7.67 -2.91 -0.02 3.07 16 15 C 0.01 0.55 5.46 84.66 0.46 1.01 16 16 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 17 Si 0.96 45.97 29.54 68.60 2.03 48.00 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 21 C 0.08 3.08 5.10 86.30 0.44 3.52 16 22 C -0.17 -6.01 5.58 -10.79 -0.06 -6.08 16 23 C -0.17 -5.03 10.18 30.62 0.31 -4.72 16 24 C -0.16 -4.31 10.25 30.62 0.31 -4.00 16 25 O -0.21 -8.77 10.58 -9.51 -0.10 -8.87 16 26 C -0.02 -0.63 7.35 23.05 0.17 -0.46 16 27 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 28 H 0.08 0.87 7.65 -2.39 -0.02 0.85 16 29 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.17 2.00 6.26 -2.91 -0.02 1.99 16 31 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.18 4.28 7.93 -2.91 -0.02 4.25 16 34 H 0.08 3.46 7.34 -2.39 -0.02 3.44 16 35 H 0.08 2.84 8.12 -2.39 -0.02 2.82 16 36 H -0.03 -1.52 8.00 -2.39 -0.02 -1.54 16 37 H 0.02 1.09 6.46 -2.38 -0.02 1.08 16 38 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.03 1.15 8.05 -2.38 -0.02 1.13 16 40 H 0.09 2.84 5.19 -2.39 -0.01 2.82 16 41 H 0.08 3.34 6.88 -2.39 -0.02 3.32 16 42 H 0.10 2.68 8.04 -2.39 -0.02 2.66 16 43 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -74.42 371.75 3.12 -71.29 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.99 Total: 17.40 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 4.86 Total: -32.37 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -3.67 Total: -84.24 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -1.08 Total: -20.09 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.42 3.12 -71.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.547 kcal (2) G-P(sol) polarization free energy of solvation -74.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds