Wall clock time and date at job start Tue Mar 31 2020 11:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00154 * 2 1 4 4 C 1.53005 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46831 * 66.88449 * 4 3 2 6 6 C 1.46904 * 110.99941 * 53.32467 * 5 4 3 7 7 C 1.50707 * 109.47156 * 66.04267 * 6 5 4 8 8 H 1.07999 * 119.99999 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99947 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00332 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00003 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46977 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47176 * 119.99930 * 11 9 7 14 14 H 1.48504 * 109.46966 * 239.99996 * 11 9 7 15 15 C 1.46898 * 111.00314 * 289.36922 * 5 4 3 16 16 C 1.50704 * 109.46983 * 297.92755 * 15 5 4 17 17 C 1.34728 * 125.66532 * 86.45582 * 16 15 5 18 18 C 1.40937 * 107.02924 * 179.97438 * 17 16 15 19 19 C 1.35954 * 106.73969 * 0.02562 * 18 17 16 20 20 C 1.47790 * 125.92878 * 179.97438 * 19 18 17 21 21 C 1.39594 * 120.14450 * 359.72542 * 20 19 18 22 22 C 1.37956 * 119.84753 * 179.74109 * 21 20 19 23 23 C 1.38364 * 120.14637 * 0.51292 * 22 21 20 24 24 C 1.38353 * 120.29399 * 359.76290 * 23 22 21 25 25 C 1.37953 * 120.15138 * 359.97438 * 24 23 22 26 26 O 1.34307 * 125.65829 * 266.14848 * 16 15 5 27 27 H 1.09001 * 109.47120 * 60.00331 * 1 2 3 28 28 H 1.09000 * 109.47549 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47244 * 300.00302 * 1 2 3 30 30 H 1.08996 * 109.47386 * 59.99385 * 3 2 1 31 31 H 1.08998 * 109.46758 * 299.99683 * 3 2 1 32 32 H 1.09001 * 109.46875 * 306.88964 * 4 3 2 33 33 H 1.08993 * 109.47055 * 186.88515 * 4 3 2 34 34 H 1.08999 * 109.46856 * 186.04027 * 6 5 4 35 35 H 1.09002 * 109.46893 * 306.04633 * 6 5 4 36 36 H 0.96996 * 120.00612 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.46874 * 57.92675 * 15 5 4 38 38 H 1.08993 * 109.46922 * 177.92448 * 15 5 4 39 39 H 1.07997 * 126.48450 * 359.96375 * 17 16 15 40 40 H 1.07999 * 126.62864 * 180.02562 * 18 17 16 41 41 H 1.07997 * 120.07639 * 359.97438 * 21 20 19 42 42 H 1.07996 * 119.92692 * 180.25517 * 22 21 20 43 43 H 1.07994 * 119.85073 * 179.74168 * 23 22 21 44 44 H 1.08009 * 119.92381 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.07705 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9812 0.6037 -1.2729 6 6 3.4426 1.3580 -2.4127 7 6 4.0357 2.7435 -2.4235 8 1 4.7416 3.0346 -1.6598 9 6 3.6762 3.6396 -3.4077 10 7 2.8161 3.2852 -4.3374 11 14 4.4118 5.3566 -3.4215 12 1 5.3461 5.5040 -2.2767 13 1 5.1488 5.5692 -4.6931 14 1 3.3248 6.3617 -3.3053 15 6 3.6146 -0.8161 -1.3609 16 6 4.3042 -1.5819 -0.2613 17 6 3.8401 -1.7447 0.9930 18 6 4.7898 -2.5211 1.6870 19 6 5.7916 -2.7915 0.8087 20 6 7.0078 -3.5805 1.0965 21 6 7.2086 -4.1203 2.3681 22 6 8.3434 -4.8602 2.6285 23 6 9.2865 -5.0588 1.6357 24 6 9.0963 -4.5217 0.3749 25 6 7.9633 -3.7843 0.0996 26 8 5.4807 -2.2204 -0.3707 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8486 0.5412 0.8228 33 1 3.9781 2.1730 0.1238 34 1 3.6983 0.8462 -3.3405 35 1 2.3586 1.4276 -2.3227 36 1 2.5635 3.9155 -5.0300 37 1 2.5349 -0.9198 -1.2540 38 1 3.9236 -1.2118 -2.3283 39 1 2.9154 -1.3540 1.3913 40 1 4.7326 -2.8397 2.7173 41 1 6.4754 -3.9622 3.1451 42 1 8.4981 -5.2819 3.6106 43 1 10.1751 -5.6353 1.8460 44 1 9.8365 -4.6801 -0.3955 45 1 7.8159 -3.3659 -0.8852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093099871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:06 Heat of formation + Delta-G solvation = 7.131770 kcal Electronic energy + Delta-G solvation = -25974.282658 eV Core-core repulsion = 22344.983674 eV Total energy + Delta-G solvation = -3629.298985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.24412 -39.03338 -38.32167 -35.96076 -32.98246 -32.78965 -31.95961 -31.00997 -29.81046 -28.68893 -26.62921 -26.10902 -24.25732 -23.19707 -22.89963 -22.21758 -20.87247 -20.07376 -19.52893 -17.62924 -16.38972 -16.21685 -16.16726 -15.95103 -15.70677 -15.17711 -14.93754 -14.65261 -14.48438 -13.96290 -13.81912 -13.59684 -13.36771 -12.90388 -12.84745 -12.67110 -12.48068 -12.23051 -11.71976 -11.58524 -11.43467 -11.37772 -11.22847 -11.12035 -10.93245 -10.69389 -10.66129 -10.39445 -9.93629 -9.81835 -9.29891 -9.27299 -9.09690 -9.05115 -8.46533 -7.63362 -7.16314 -6.06422 -4.07837 0.79329 1.26953 2.29087 2.94230 3.12689 3.28401 3.36594 3.41501 3.80175 4.14876 4.40400 4.65915 4.77598 4.82223 4.97693 5.08381 5.28218 5.29020 5.30512 5.33125 5.43936 5.50629 5.57640 5.71647 5.77471 5.84159 5.85222 5.87956 5.94839 5.97788 6.04731 6.15332 6.28756 6.33325 6.34286 6.38396 6.50428 6.56957 6.69204 6.81554 6.88109 7.21961 7.31660 7.52110 7.54794 7.76774 8.03898 8.15620 8.48841 9.00304 9.56730 11.04036 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.003254 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.416932 B = 8601.818447 C = 9962.207937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.386 6.386 3 C 0.018 3.982 4 C 0.062 3.938 5 N -0.527 5.527 6 C 0.189 3.811 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.286 1.286 15 C 0.114 3.886 16 C 0.041 3.959 17 C -0.211 4.211 18 C -0.184 4.184 19 C -0.001 4.001 20 C 0.000 4.000 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.106 4.106 26 O -0.164 6.164 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.030 0.970 35 H 0.004 0.996 36 H 0.261 0.739 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.651 -14.453 13.001 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.306 6.306 3 C -0.060 4.060 4 C -0.067 4.067 5 N -0.251 5.251 6 C 0.064 3.936 7 C -0.545 4.545 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.724 3.276 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.212 1.212 15 C -0.013 4.013 16 C -0.010 4.010 17 C -0.231 4.231 18 C -0.203 4.203 19 C -0.051 4.051 20 C 0.000 4.000 21 C -0.123 4.123 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.124 4.124 26 O -0.060 6.060 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.048 0.952 35 H 0.021 0.979 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.172 0.828 40 H 0.161 0.839 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.377 -14.523 12.532 19.675 hybrid contribution -0.894 1.275 0.052 1.558 sum 3.483 -13.248 12.584 18.601 Atomic orbital electron populations 1.22679 0.82475 1.01858 0.99773 1.87877 1.18752 1.28889 1.95049 1.23543 0.96903 0.84394 1.01147 1.22279 0.89752 1.01397 0.93249 1.62302 1.59598 0.99457 1.03737 1.19850 0.93746 0.92862 0.87106 1.21183 1.25321 0.96290 1.11676 0.91818 1.24968 0.95257 0.98830 0.95462 1.69961 1.33326 1.35611 1.14845 0.86473 0.78974 0.84104 0.78081 1.19627 1.20990 1.21178 1.20921 0.97754 0.88987 0.93626 1.22818 0.84024 0.96414 0.97748 1.21588 1.02703 1.05030 0.93746 1.21717 0.94936 1.03422 1.00231 1.20256 0.97066 1.03026 0.84742 1.17816 0.91147 0.96795 0.94264 1.21038 0.98166 0.97858 0.95286 1.21011 0.94095 0.99025 0.99406 1.21219 0.99301 1.00252 0.93474 1.21097 0.97443 0.97785 0.97081 1.21352 0.93531 0.98213 0.99341 1.84033 1.34960 1.53645 1.33396 0.94123 0.90359 0.94733 0.94235 0.90657 0.91211 0.88937 0.95158 0.97860 0.92969 0.88862 0.90464 0.82816 0.83886 0.85568 0.85701 0.86031 0.85725 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.39 -6.27 6.31 -35.23 -0.22 -6.50 16 3 C 0.02 0.31 5.68 37.16 0.21 0.52 16 4 C 0.06 1.19 5.42 -3.82 -0.02 1.17 16 5 N -0.53 -11.35 4.72 -237.51 -1.12 -12.47 16 6 C 0.19 4.73 4.35 -4.97 -0.02 4.71 16 7 C -0.51 -13.76 8.60 -34.44 -0.30 -14.06 16 8 H 0.06 1.73 7.10 -52.49 -0.37 1.36 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 11 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.11 2.18 5.13 -4.98 -0.03 2.16 16 16 C 0.04 0.74 6.24 -35.55 -0.22 0.52 16 17 C -0.21 -3.38 8.70 -39.80 -0.35 -3.72 16 18 C -0.18 -2.69 10.26 -39.38 -0.40 -3.09 16 19 C 0.00 -0.02 7.03 -36.50 -0.26 -0.27 16 20 C 0.00 0.00 5.87 -104.98 -0.62 -0.62 16 21 C -0.11 -1.16 9.56 -39.18 -0.37 -1.54 16 22 C -0.12 -1.09 10.03 -39.64 -0.40 -1.49 16 23 C -0.12 -1.15 10.04 -39.49 -0.40 -1.54 16 24 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 25 C -0.11 -1.36 9.72 -39.18 -0.38 -1.74 16 26 O -0.16 -2.98 10.41 4.66 0.05 -2.94 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.55 5.80 -51.93 -0.30 1.25 16 32 H 0.07 1.26 5.35 -51.93 -0.28 0.98 16 33 H 0.09 1.86 7.06 -51.93 -0.37 1.49 16 34 H 0.03 0.83 7.99 -51.93 -0.41 0.41 16 35 H 0.00 0.10 5.71 -51.93 -0.30 -0.20 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.09 1.74 5.19 -51.93 -0.27 1.47 16 38 H 0.08 1.48 8.01 -51.93 -0.42 1.07 16 39 H 0.15 2.36 6.83 -52.49 -0.36 2.00 16 40 H 0.14 1.66 7.26 -52.49 -0.38 1.28 16 41 H 0.13 1.17 6.99 -52.49 -0.37 0.81 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.13 1.68 7.91 -52.48 -0.42 1.26 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -30.15 364.98 -9.34 -39.50 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.33 Total: 3.53 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -2.93 Total: -17.65 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.39 Total: -37.70 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.17 Total: -9.43 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.15 -9.34 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093099871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.627 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds