Wall clock time and date at job start Tue Mar 31 2020 11:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00154 * 2 1 4 4 C 1.53005 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46831 * 66.88449 * 4 3 2 6 6 C 1.46904 * 110.99941 * 53.32467 * 5 4 3 7 7 C 1.50707 * 109.47156 * 66.04267 * 6 5 4 8 8 H 1.07999 * 119.99999 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99947 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00332 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00003 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46977 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47176 * 119.99930 * 11 9 7 14 14 H 1.48504 * 109.46966 * 239.99996 * 11 9 7 15 15 C 1.46898 * 111.00314 * 289.36922 * 5 4 3 16 16 C 1.50704 * 109.46983 * 297.92755 * 15 5 4 17 17 C 1.34728 * 125.66532 * 86.45582 * 16 15 5 18 18 C 1.40937 * 107.02924 * 179.97438 * 17 16 15 19 19 C 1.35954 * 106.73969 * 0.02562 * 18 17 16 20 20 C 1.47790 * 125.92878 * 179.97438 * 19 18 17 21 21 C 1.39594 * 120.14450 * 359.72542 * 20 19 18 22 22 C 1.37956 * 119.84753 * 179.74109 * 21 20 19 23 23 C 1.38364 * 120.14637 * 0.51292 * 22 21 20 24 24 C 1.38353 * 120.29399 * 359.76290 * 23 22 21 25 25 C 1.37953 * 120.15138 * 359.97438 * 24 23 22 26 26 O 1.34307 * 125.65829 * 266.14848 * 16 15 5 27 27 H 1.09001 * 109.47120 * 60.00331 * 1 2 3 28 28 H 1.09000 * 109.47549 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47244 * 300.00302 * 1 2 3 30 30 H 1.08996 * 109.47386 * 59.99385 * 3 2 1 31 31 H 1.08998 * 109.46758 * 299.99683 * 3 2 1 32 32 H 1.09001 * 109.46875 * 306.88964 * 4 3 2 33 33 H 1.08993 * 109.47055 * 186.88515 * 4 3 2 34 34 H 1.08999 * 109.46856 * 186.04027 * 6 5 4 35 35 H 1.09002 * 109.46893 * 306.04633 * 6 5 4 36 36 H 0.96996 * 120.00612 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.46874 * 57.92675 * 15 5 4 38 38 H 1.08993 * 109.46922 * 177.92448 * 15 5 4 39 39 H 1.07997 * 126.48450 * 359.96375 * 17 16 15 40 40 H 1.07999 * 126.62864 * 180.02562 * 18 17 16 41 41 H 1.07997 * 120.07639 * 359.97438 * 21 20 19 42 42 H 1.07996 * 119.92692 * 180.25517 * 22 21 20 43 43 H 1.07994 * 119.85073 * 179.74168 * 23 22 21 44 44 H 1.08009 * 119.92381 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.07705 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9812 0.6037 -1.2729 6 6 3.4426 1.3580 -2.4127 7 6 4.0357 2.7435 -2.4235 8 1 4.7416 3.0346 -1.6598 9 6 3.6762 3.6396 -3.4077 10 7 2.8161 3.2852 -4.3374 11 14 4.4118 5.3566 -3.4215 12 1 5.3461 5.5040 -2.2767 13 1 5.1488 5.5692 -4.6931 14 1 3.3248 6.3617 -3.3053 15 6 3.6146 -0.8161 -1.3609 16 6 4.3042 -1.5819 -0.2613 17 6 3.8401 -1.7447 0.9930 18 6 4.7898 -2.5211 1.6870 19 6 5.7916 -2.7915 0.8087 20 6 7.0078 -3.5805 1.0965 21 6 7.2086 -4.1203 2.3681 22 6 8.3434 -4.8602 2.6285 23 6 9.2865 -5.0588 1.6357 24 6 9.0963 -4.5217 0.3749 25 6 7.9633 -3.7843 0.0996 26 8 5.4807 -2.2204 -0.3707 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8486 0.5412 0.8228 33 1 3.9781 2.1730 0.1238 34 1 3.6983 0.8462 -3.3405 35 1 2.3586 1.4276 -2.3227 36 1 2.5635 3.9155 -5.0300 37 1 2.5349 -0.9198 -1.2540 38 1 3.9236 -1.2118 -2.3283 39 1 2.9154 -1.3540 1.3913 40 1 4.7326 -2.8397 2.7173 41 1 6.4754 -3.9622 3.1451 42 1 8.4981 -5.2819 3.6106 43 1 10.1751 -5.6353 1.8460 44 1 9.8365 -4.6801 -0.3955 45 1 7.8159 -3.3659 -0.8852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093099871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:06 Heat of formation + Delta-G solvation = -9.940821 kcal Electronic energy + Delta-G solvation = -25975.022982 eV Core-core repulsion = 22344.983674 eV Total energy + Delta-G solvation = -3630.039308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.50761 -39.96198 -39.70740 -37.45832 -34.80450 -34.12065 -33.18017 -31.83304 -31.14103 -30.31934 -28.26281 -27.28887 -25.72351 -24.83522 -23.93277 -23.31950 -22.01920 -21.49793 -20.95915 -18.66357 -18.37563 -17.68551 -17.53603 -17.06370 -16.91770 -16.65964 -16.20883 -15.90964 -15.70030 -15.50469 -15.11462 -14.69466 -14.49050 -14.33060 -13.94120 -13.76144 -13.73796 -13.66474 -13.26566 -13.07730 -13.03940 -12.76758 -12.70407 -12.54788 -12.33652 -12.21499 -11.92507 -11.90799 -11.78622 -11.28471 -10.92436 -10.66221 -10.41795 -10.37140 -9.90468 -8.98544 -8.67936 -8.19071 -6.28826 -0.16522 0.46234 1.11464 1.39878 1.41844 1.54516 1.78235 1.92328 2.40780 2.85936 2.93792 3.13356 3.42897 3.61463 3.90733 4.05678 4.10721 4.15661 4.20431 4.29764 4.36179 4.41834 4.43275 4.53014 4.54455 4.57298 4.59937 4.72464 4.79169 4.82756 4.92054 4.96422 5.05055 5.10171 5.13509 5.19194 5.27094 5.34163 5.49895 5.53686 5.57943 5.66425 5.70592 6.03229 6.04273 6.20701 6.26765 6.38281 6.57132 6.86727 7.40498 8.91231 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.003254 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.416932 B = 8601.818447 C = 9962.207937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.031 3.969 4 C 0.065 3.935 5 N -0.540 5.540 6 C 0.207 3.793 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.964 3.036 12 H -0.265 1.265 13 H -0.281 1.281 14 H -0.277 1.277 15 C 0.123 3.877 16 C 0.006 3.994 17 C -0.195 4.195 18 C -0.186 4.186 19 C -0.003 4.003 20 C -0.034 4.034 21 C -0.105 4.105 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.129 4.129 26 O -0.190 6.190 27 H 0.028 0.972 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.079 0.921 34 H -0.004 1.004 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.164 0.836 40 H 0.178 0.822 41 H 0.145 0.855 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.143 0.857 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -15.469 16.134 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.047 4.047 4 C -0.063 4.063 5 N -0.264 5.264 6 C 0.081 3.919 7 C -0.557 4.557 8 H 0.078 0.922 9 C -0.192 4.192 10 N -0.572 5.572 11 Si 0.789 3.211 12 H -0.189 1.189 13 H -0.207 1.207 14 H -0.203 1.203 15 C -0.004 4.004 16 C -0.044 4.044 17 C -0.214 4.214 18 C -0.205 4.205 19 C -0.053 4.053 20 C -0.034 4.034 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.147 4.147 26 O -0.087 6.087 27 H 0.047 0.953 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.014 0.986 35 H 0.008 0.992 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.181 0.819 40 H 0.195 0.805 41 H 0.163 0.837 42 H 0.177 0.823 43 H 0.172 0.828 44 H 0.161 0.839 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.452 -15.550 15.682 22.747 hybrid contribution -1.143 1.414 -0.856 2.010 sum 4.309 -14.136 14.825 20.933 Atomic orbital electron populations 1.22879 0.80593 1.03552 1.00156 1.87836 1.20689 1.27821 1.95075 1.23222 0.95803 0.85037 1.00599 1.22231 0.91006 1.00775 0.92307 1.62166 1.59998 1.00630 1.03614 1.19460 0.92826 0.92344 0.87236 1.21436 1.25237 0.97333 1.11673 0.92158 1.25816 0.95558 1.02895 0.94975 1.70080 1.34535 1.37103 1.15524 0.85406 0.78348 0.79160 0.78145 1.18887 1.20734 1.20253 1.20738 0.98246 0.87627 0.93800 1.22533 0.85024 0.98638 0.98215 1.21723 1.02839 1.04038 0.92834 1.22044 0.93884 1.03026 1.01528 1.20928 0.98071 1.02274 0.84004 1.18029 0.90966 0.98531 0.95881 1.21330 0.99254 0.97310 0.94407 1.21459 0.93014 0.97838 1.00919 1.21673 1.00142 0.99025 0.92549 1.21368 0.96866 0.97211 0.98541 1.21399 0.94945 0.99593 0.98793 1.83995 1.35286 1.54379 1.35086 0.95336 0.88063 0.92699 0.91627 0.94166 0.89696 0.90227 0.98575 0.99208 0.92740 0.88489 0.92061 0.81881 0.80500 0.83741 0.82280 0.82766 0.83890 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 11.01 113.37 1.25 1.86 16 2 O -0.39 -12.67 6.31 -148.98 -0.94 -13.61 16 3 C 0.03 1.11 5.68 71.98 0.41 1.52 16 4 C 0.06 2.54 5.42 86.30 0.47 3.00 16 5 N -0.54 -24.44 4.72 -905.34 -4.28 -28.72 16 6 C 0.21 11.00 4.35 85.56 0.37 11.38 16 7 C -0.52 -29.21 8.60 25.60 0.22 -28.99 16 8 H 0.06 3.37 7.10 -2.91 -0.02 3.35 16 9 C 0.01 0.32 5.46 84.65 0.46 0.78 16 10 N -0.93 -55.50 13.29 21.44 0.28 -55.22 16 11 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 14 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 15 C 0.12 4.96 5.13 85.56 0.44 5.39 16 16 C 0.01 0.24 6.24 24.88 0.16 0.39 16 17 C -0.19 -6.09 8.70 22.13 0.19 -5.90 16 18 C -0.19 -5.16 10.26 22.40 0.23 -4.93 16 19 C 0.00 -0.10 7.03 24.27 0.17 0.07 16 20 C -0.03 -0.90 5.87 -20.10 -0.12 -1.02 16 21 C -0.11 -2.05 9.56 22.53 0.22 -1.83 16 22 C -0.11 -1.69 10.03 22.23 0.22 -1.47 16 23 C -0.12 -1.73 10.04 22.33 0.22 -1.50 16 24 C -0.12 -2.34 10.03 22.23 0.22 -2.11 16 25 C -0.13 -3.34 9.72 22.53 0.22 -3.12 16 26 O -0.19 -7.22 10.41 -6.26 -0.07 -7.29 16 27 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.04 1.73 5.80 -2.39 -0.01 1.71 16 32 H 0.08 3.04 5.35 -2.39 -0.01 3.03 16 33 H 0.08 3.27 7.06 -2.39 -0.02 3.26 16 34 H 0.00 -0.23 7.99 -2.39 -0.02 -0.25 16 35 H -0.01 -0.53 5.71 -2.39 -0.01 -0.54 16 36 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 37 H 0.10 3.79 5.19 -2.39 -0.01 3.78 16 38 H 0.06 2.57 8.01 -2.39 -0.02 2.55 16 39 H 0.16 4.73 6.83 -2.91 -0.02 4.71 16 40 H 0.18 3.53 7.26 -2.91 -0.02 3.51 16 41 H 0.14 2.18 6.99 -2.91 -0.02 2.16 16 42 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 44 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 45 H 0.11 3.13 7.91 -2.91 -0.02 3.11 16 Total: -1.00 -68.16 364.98 3.37 -64.79 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.99 Total: 20.26 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 5.35 Total: -26.47 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -3.99 Total: -83.94 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.00 Total: -20.90 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -68.16 3.37 -64.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093099871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.851 kcal (2) G-P(sol) polarization free energy of solvation -68.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds