Wall clock time and date at job start Tue Mar 31 2020 10:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46872 * 2 1 4 4 C 1.46496 * 119.99830 * 269.99947 * 3 2 1 5 5 C 1.50703 * 109.46739 * 269.99623 * 4 3 2 6 6 H 1.07997 * 120.00156 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99657 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00270 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99687 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47266 * 90.00106 * 9 7 5 11 11 H 1.48502 * 109.47358 * 210.00155 * 9 7 5 12 12 H 1.48504 * 109.47295 * 330.00148 * 9 7 5 13 13 C 1.34782 * 119.99750 * 89.99642 * 3 2 1 14 14 O 1.21283 * 119.99336 * 180.02562 * 13 3 2 15 15 C 1.50689 * 120.00170 * 359.97438 * 13 3 2 16 16 C 1.50706 * 109.47334 * 180.02562 * 15 13 3 17 17 C 1.39880 * 126.03564 * 270.02957 * 16 15 13 18 18 C 1.50695 * 125.90079 * 359.93654 * 17 16 15 19 19 N 1.30836 * 108.19611 * 179.97438 * 17 16 15 20 20 N 1.40080 * 108.20867 * 359.77857 * 19 17 16 21 21 C 1.46508 * 126.03855 * 180.23079 * 20 19 17 22 22 F 1.39898 * 109.46691 * 30.15545 * 21 20 19 23 23 F 1.39897 * 109.46663 * 150.15068 * 21 20 19 24 24 C 1.34946 * 107.92639 * 0.36494 * 20 19 17 25 25 C 1.50703 * 126.12821 * 179.90663 * 24 20 19 26 26 H 1.09005 * 109.47029 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47687 * 300.00436 * 1 2 3 28 28 H 1.09000 * 109.47003 * 60.00681 * 1 2 3 29 29 H 1.08991 * 109.47363 * 239.99882 * 2 1 3 30 30 H 1.09000 * 109.47003 * 119.99318 * 2 1 3 31 31 H 1.08995 * 109.47452 * 29.99558 * 4 3 2 32 32 H 1.08999 * 109.47280 * 150.00118 * 4 3 2 33 33 H 0.96998 * 119.99853 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47265 * 60.00091 * 15 13 3 35 35 H 1.08996 * 109.47696 * 299.99924 * 15 13 3 36 36 H 1.09003 * 109.46956 * 90.00221 * 18 17 16 37 37 H 1.08999 * 109.47037 * 210.00118 * 18 17 16 38 38 H 1.09003 * 109.47071 * 330.00254 * 18 17 16 39 39 H 1.08997 * 109.47057 * 270.15446 * 21 20 19 40 40 H 1.09002 * 109.47152 * 269.68605 * 25 24 20 41 41 H 1.09001 * 109.46980 * 149.68706 * 25 24 20 42 42 H 1.09004 * 109.47113 * 29.68687 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7036 6 1 4.3426 1.2304 -1.0960 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9131 2.0957 -3.4173 10 1 5.9761 0.8745 -4.2599 11 1 6.3923 3.2628 -4.2007 12 1 6.7735 1.9161 -2.2203 13 6 2.2428 2.0166 1.1673 14 8 2.6466 3.1603 1.1672 15 6 1.9911 1.3065 2.4723 16 6 2.3169 2.2300 3.6178 17 6 3.5614 2.3576 4.2435 18 6 4.8110 1.5934 3.8895 19 7 3.4529 3.2546 5.1897 20 7 2.1354 3.7305 5.1928 21 6 1.5890 4.7493 6.0927 22 9 2.6019 5.6442 6.4535 23 9 0.5630 5.4436 5.4427 24 6 1.4575 3.0825 4.2224 25 6 0.0052 3.2781 3.8707 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6752 3.5161 -4.4440 34 1 2.6209 0.4188 2.5303 35 1 0.9430 1.0127 2.5299 36 1 5.3729 2.1449 3.1356 37 1 5.4252 1.4682 4.7811 38 1 4.5387 0.6142 3.4955 39 1 1.1927 4.2691 6.9873 40 1 -0.6058 2.5888 4.4535 41 1 -0.1407 3.0835 2.8081 42 1 -0.2883 4.3034 4.0960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:14 Heat of formation + Delta-G solvation = -57.350507 kcal Electronic energy + Delta-G solvation = -27195.644854 eV Core-core repulsion = 23041.612929 eV Total energy + Delta-G solvation = -4154.031925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.52512 -47.63890 -41.39458 -38.84928 -35.22677 -33.91149 -33.09797 -32.58778 -30.07660 -29.49697 -29.00064 -27.15977 -25.93624 -24.62766 -22.99502 -22.49297 -20.11166 -19.97096 -18.31833 -18.25332 -17.66181 -17.24440 -16.51854 -16.23739 -15.49081 -15.07898 -14.69891 -14.60222 -14.38183 -14.17927 -14.05451 -13.75518 -13.34651 -13.28529 -13.18117 -13.02593 -12.87793 -12.62110 -12.39264 -12.19145 -12.06527 -11.98616 -11.74762 -11.60119 -11.37463 -11.15636 -10.88442 -10.71719 -10.49932 -10.44944 -10.09427 -9.59475 -9.23502 -8.93041 -8.40681 -8.27433 -7.59931 -6.01271 -4.05591 1.57864 1.90184 2.73425 3.24806 3.31636 3.38660 3.42268 3.52873 3.81252 4.08330 4.24151 4.47821 4.49624 4.79162 5.01121 5.20613 5.23075 5.29759 5.33378 5.37390 5.41650 5.51067 5.64393 5.68428 5.78824 5.81443 5.82228 5.99803 6.04098 6.10426 6.18494 6.25800 6.49796 6.61610 6.76697 7.12911 7.49395 7.61180 7.62866 7.95900 8.27775 8.50181 8.94953 9.19511 9.59626 11.06790 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.003799 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.315486 B = 7368.964147 C = 7911.838716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.600 5.600 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.505 3.495 14 O -0.533 6.533 15 C -0.065 4.065 16 C -0.192 4.192 17 C 0.110 3.890 18 C -0.076 4.076 19 N -0.283 5.283 20 N -0.443 5.443 21 C 0.516 3.484 22 F -0.175 7.175 23 F -0.181 7.181 24 C 0.109 3.891 25 C -0.108 4.108 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.150 0.850 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 -5.725 18.787 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.409 6.409 15 C -0.106 4.106 16 C -0.203 4.203 17 C -0.058 4.058 18 C -0.134 4.134 19 N -0.103 5.103 20 N -0.235 5.235 21 C 0.382 3.618 22 F -0.156 7.156 23 F -0.162 7.162 24 C -0.014 4.014 25 C -0.166 4.166 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.166 0.834 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.510 -4.185 19.626 21.427 hybrid contribution 0.544 -0.298 -1.190 1.342 sum -6.966 -4.483 18.436 20.212 Atomic orbital electron populations 1.22227 0.96962 1.01332 1.02239 1.21403 0.93395 0.84378 1.02629 1.48264 1.64122 1.13172 1.07692 1.19228 0.96151 0.93584 0.78246 1.21444 0.96994 1.31702 1.06104 0.92474 1.24933 0.97757 0.94970 0.96469 1.69933 1.35674 1.33550 1.14334 0.86524 0.84835 0.77631 0.78593 1.20671 1.21163 1.19883 1.20280 0.78764 0.87065 0.84815 1.90686 1.45079 1.18067 1.87080 1.20072 1.02939 0.97318 0.90249 1.19236 0.92915 1.05714 1.02433 1.22342 0.96093 0.94696 0.92675 1.20255 0.92016 0.98894 1.02260 1.77378 0.93308 1.15641 1.23938 1.49437 1.09912 1.33354 1.30845 1.21133 0.75040 0.77779 0.87843 1.93117 1.61928 1.69283 1.91313 1.93045 1.58870 1.80393 1.83931 1.20724 0.96188 0.94129 0.90332 1.20780 0.87919 1.04109 1.03814 0.92239 0.93111 0.92115 0.90062 0.91704 0.95176 0.94073 0.92793 0.88642 0.89035 0.89583 0.90843 0.90217 0.83370 0.90144 0.89279 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.58 16 3 N -0.60 -12.28 2.46 -175.07 -0.43 -12.71 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 5 C -0.52 -14.79 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 13 C 0.50 10.26 7.67 -10.99 -0.08 10.17 16 14 O -0.53 -13.60 15.61 5.56 0.09 -13.51 16 15 C -0.06 -0.94 4.16 -29.04 -0.12 -1.06 16 16 C -0.19 -3.02 4.59 -105.05 -0.48 -3.51 16 17 C 0.11 1.77 7.22 -82.40 -0.59 1.18 16 18 C -0.08 -1.00 10.26 36.00 0.37 -0.64 16 19 N -0.28 -4.69 12.41 33.67 0.42 -4.28 16 20 N -0.44 -6.45 3.97 -62.39 -0.25 -6.70 16 21 C 0.52 5.55 6.57 59.85 0.39 5.94 16 22 F -0.18 -2.26 17.36 2.25 0.04 -2.22 16 23 F -0.18 -2.00 14.49 2.25 0.03 -1.96 16 24 C 0.11 1.58 6.83 -82.27 -0.56 1.02 16 25 C -0.11 -1.20 9.63 36.01 0.35 -0.85 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.58 7.22 -51.93 -0.37 0.21 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 30 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 31 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.10 1.19 6.52 -51.93 -0.34 0.85 16 35 H 0.09 1.08 6.81 -51.93 -0.35 0.72 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.90 7.26 -51.93 -0.38 0.52 16 39 H 0.15 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.08 7.77 -51.93 -0.40 0.68 16 42 H 0.09 0.93 5.58 -51.93 -0.29 0.65 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -36.65 359.68 -5.57 -42.22 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.78 Total: -2.18 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -0.83 Total: 5.03 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.48 Total: -49.72 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.07 Total: -4.18 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.65 -5.57 -42.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.134 kcal (2) G-P(sol) polarization free energy of solvation -36.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds