Wall clock time and date at job start Tue Mar 31 2020 10:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46872 * 2 1 4 4 C 1.46496 * 119.99830 * 269.99947 * 3 2 1 5 5 C 1.50703 * 109.46739 * 269.99623 * 4 3 2 6 6 H 1.07997 * 120.00156 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99657 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00270 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99687 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47266 * 90.00106 * 9 7 5 11 11 H 1.48502 * 109.47358 * 210.00155 * 9 7 5 12 12 H 1.48504 * 109.47295 * 330.00148 * 9 7 5 13 13 C 1.34782 * 119.99750 * 89.99642 * 3 2 1 14 14 O 1.21283 * 119.99336 * 180.02562 * 13 3 2 15 15 C 1.50689 * 120.00170 * 359.97438 * 13 3 2 16 16 C 1.50706 * 109.47334 * 180.02562 * 15 13 3 17 17 C 1.39880 * 126.03564 * 270.02957 * 16 15 13 18 18 C 1.50695 * 125.90079 * 359.93654 * 17 16 15 19 19 N 1.30836 * 108.19611 * 179.97438 * 17 16 15 20 20 N 1.40080 * 108.20867 * 359.77857 * 19 17 16 21 21 C 1.46508 * 126.03855 * 180.23079 * 20 19 17 22 22 F 1.39898 * 109.46691 * 30.15545 * 21 20 19 23 23 F 1.39897 * 109.46663 * 150.15068 * 21 20 19 24 24 C 1.34946 * 107.92639 * 0.36494 * 20 19 17 25 25 C 1.50703 * 126.12821 * 179.90663 * 24 20 19 26 26 H 1.09005 * 109.47029 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47687 * 300.00436 * 1 2 3 28 28 H 1.09000 * 109.47003 * 60.00681 * 1 2 3 29 29 H 1.08991 * 109.47363 * 239.99882 * 2 1 3 30 30 H 1.09000 * 109.47003 * 119.99318 * 2 1 3 31 31 H 1.08995 * 109.47452 * 29.99558 * 4 3 2 32 32 H 1.08999 * 109.47280 * 150.00118 * 4 3 2 33 33 H 0.96998 * 119.99853 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47265 * 60.00091 * 15 13 3 35 35 H 1.08996 * 109.47696 * 299.99924 * 15 13 3 36 36 H 1.09003 * 109.46956 * 90.00221 * 18 17 16 37 37 H 1.08999 * 109.47037 * 210.00118 * 18 17 16 38 38 H 1.09003 * 109.47071 * 330.00254 * 18 17 16 39 39 H 1.08997 * 109.47057 * 270.15446 * 21 20 19 40 40 H 1.09002 * 109.47152 * 269.68605 * 25 24 20 41 41 H 1.09001 * 109.46980 * 149.68706 * 25 24 20 42 42 H 1.09004 * 109.47113 * 29.68687 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7036 6 1 4.3426 1.2304 -1.0960 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9131 2.0957 -3.4173 10 1 5.9761 0.8745 -4.2599 11 1 6.3923 3.2628 -4.2007 12 1 6.7735 1.9161 -2.2203 13 6 2.2428 2.0166 1.1673 14 8 2.6466 3.1603 1.1672 15 6 1.9911 1.3065 2.4723 16 6 2.3169 2.2300 3.6178 17 6 3.5614 2.3576 4.2435 18 6 4.8110 1.5934 3.8895 19 7 3.4529 3.2546 5.1897 20 7 2.1354 3.7305 5.1928 21 6 1.5890 4.7493 6.0927 22 9 2.6019 5.6442 6.4535 23 9 0.5630 5.4436 5.4427 24 6 1.4575 3.0825 4.2224 25 6 0.0052 3.2781 3.8707 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6752 3.5161 -4.4440 34 1 2.6209 0.4188 2.5303 35 1 0.9430 1.0127 2.5299 36 1 5.3729 2.1449 3.1356 37 1 5.4252 1.4682 4.7811 38 1 4.5387 0.6142 3.4955 39 1 1.1927 4.2691 6.9873 40 1 -0.6058 2.5888 4.4535 41 1 -0.1407 3.0835 2.8081 42 1 -0.2883 4.3034 4.0960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103209899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:14 Heat of formation + Delta-G solvation = -82.032525 kcal Electronic energy + Delta-G solvation = -27196.715147 eV Core-core repulsion = 23041.612929 eV Total energy + Delta-G solvation = -4155.102217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.40010 -48.53611 -42.49119 -40.44038 -36.85709 -35.06614 -34.83438 -33.99004 -31.56366 -30.64361 -30.00623 -28.85433 -27.17540 -25.72996 -24.68182 -23.91802 -21.18282 -21.12204 -19.70341 -19.15838 -18.68650 -18.57635 -18.19572 -17.81417 -17.11406 -16.33972 -16.18593 -15.83804 -15.61273 -15.29771 -15.08807 -14.84952 -14.61172 -14.44149 -14.39800 -14.17600 -14.11076 -13.98079 -13.55967 -13.49724 -13.21247 -13.16219 -13.04601 -13.01873 -12.71624 -12.65239 -12.55828 -12.41541 -12.11455 -11.76262 -11.68101 -11.58095 -10.62057 -10.57362 -10.31741 -9.44317 -9.34329 -8.19985 -6.34338 0.51833 0.96120 1.36329 1.39716 1.49491 1.56271 1.97553 2.36896 2.49896 2.60915 2.89138 3.09512 3.50392 3.55410 3.77588 3.90355 4.06550 4.16726 4.19948 4.33025 4.50617 4.54474 4.62856 4.65229 4.74129 4.77397 4.93399 4.94173 5.00741 5.06580 5.09091 5.12897 5.13401 5.28120 5.47966 5.55449 5.62830 5.75617 5.93669 6.11114 6.51748 6.74907 6.92320 7.32493 7.62877 8.86746 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.003799 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.315486 B = 7368.964147 C = 7911.838716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.264 3.736 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.499 3.501 14 O -0.597 6.597 15 C -0.046 4.046 16 C -0.222 4.222 17 C 0.094 3.906 18 C -0.075 4.075 19 N -0.314 5.314 20 N -0.449 5.449 21 C 0.507 3.493 22 F -0.192 7.192 23 F -0.184 7.184 24 C 0.109 3.891 25 C -0.105 4.105 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.020 0.980 32 H -0.010 1.010 33 H 0.265 0.735 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.208 0.792 40 H 0.121 0.879 41 H 0.077 0.923 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 -8.140 20.481 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.142 3.858 5 C -0.576 4.576 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.789 3.211 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.288 3.712 14 O -0.478 6.478 15 C -0.087 4.087 16 C -0.232 4.232 17 C -0.074 4.074 18 C -0.133 4.133 19 N -0.135 5.135 20 N -0.242 5.242 21 C 0.374 3.626 22 F -0.173 7.173 23 F -0.166 7.166 24 C -0.014 4.014 25 C -0.163 4.163 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.038 0.962 32 H 0.009 0.991 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.224 0.776 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.236 -6.650 21.342 23.823 hybrid contribution 0.693 0.512 -1.698 1.904 sum -7.543 -6.138 19.644 21.920 Atomic orbital electron populations 1.22167 0.94613 1.03499 1.01717 1.21779 0.95324 0.81263 1.04054 1.48285 1.64138 1.15130 1.05986 1.18630 0.95116 0.91285 0.80781 1.21748 0.98001 1.31627 1.06270 0.92656 1.25856 1.02248 0.94585 0.96586 1.70061 1.37769 1.34470 1.14817 0.85454 0.79223 0.78135 0.78247 1.18599 1.21036 1.19684 1.21353 0.77023 0.86486 0.86361 1.90653 1.47920 1.21131 1.88093 1.20030 1.05681 0.97057 0.85892 1.19476 0.93234 1.07258 1.03256 1.22781 0.97101 0.94806 0.92732 1.20318 0.91320 0.99237 1.02426 1.77289 0.94780 1.16391 1.24997 1.49797 1.09377 1.33668 1.31323 1.22135 0.74454 0.77195 0.88772 1.93081 1.62922 1.69984 1.91336 1.93036 1.58732 1.80527 1.84273 1.21287 0.97499 0.93087 0.89565 1.20891 0.86416 1.05343 1.03648 0.88634 0.91612 0.94722 0.91302 0.87605 0.96218 0.99140 0.92585 0.85851 0.85417 0.91957 0.89111 0.88054 0.77562 0.86086 0.90455 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 10.24 71.98 0.74 -2.85 16 2 C 0.10 2.75 5.93 86.38 0.51 3.27 16 3 N -0.60 -24.81 2.46 -826.17 -2.03 -26.83 16 4 C 0.26 14.30 5.16 85.63 0.44 14.74 16 5 C -0.54 -31.19 9.39 25.60 0.24 -30.95 16 6 H 0.06 3.15 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.34 5.46 84.66 0.46 0.80 16 8 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 9 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.50 20.25 7.67 87.65 0.67 20.92 16 14 O -0.60 -31.74 15.61 -3.04 -0.05 -31.78 16 15 C -0.05 -1.23 4.16 29.10 0.12 -1.11 16 16 C -0.22 -6.64 4.59 -20.14 -0.09 -6.73 16 17 C 0.09 2.95 7.22 43.10 0.31 3.26 16 18 C -0.07 -1.93 10.26 71.23 0.73 -1.20 16 19 N -0.31 -10.28 12.41 -47.38 -0.59 -10.87 16 20 N -0.45 -12.50 3.97 -351.30 -1.40 -13.90 16 21 C 0.51 9.97 6.57 127.77 0.84 10.81 16 22 F -0.19 -4.83 17.36 44.97 0.78 -4.05 16 23 F -0.18 -3.78 14.49 44.97 0.65 -3.13 16 24 C 0.11 2.99 6.83 41.40 0.28 3.27 16 25 C -0.11 -2.08 9.63 71.24 0.69 -1.39 16 26 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 28 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 30 H 0.11 2.13 6.44 -2.39 -0.02 2.11 16 31 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 32 H -0.01 -0.61 7.42 -2.39 -0.02 -0.63 16 33 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.12 2.58 6.52 -2.39 -0.02 2.57 16 35 H 0.13 2.45 6.81 -2.39 -0.02 2.44 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.10 2.08 7.26 -2.39 -0.02 2.07 16 39 H 0.21 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.74 7.77 -2.39 -0.02 1.72 16 42 H 0.09 1.72 5.58 -2.38 -0.01 1.71 16 Total: -1.00 -85.89 359.68 6.67 -79.22 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.04 Total: 8.01 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 5.94 Total: 12.84 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -3.73 Total: -108.63 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.05 Total: -31.78 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 1.43 Total: -7.17 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -85.89 6.67 -79.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.809 kcal (2) G-P(sol) polarization free energy of solvation -85.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds